CN186141

Overview
NameCN186141
Unique NameCN186141
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12025 contig Csv1_Contig12025:702..1452. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN186141 vs. ExPASy Swiss-Prot
Match: PAT_SALEP (Putrescine aminotransferase OS=Salmonella enteritidis PT4 (strain P125109) GN=patA PE=3 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 4.709e-26
Identity = 61/180 (33.89%), Postives = 98/180 (54.44%), Query Frame = 1 
Query:  163 KEGPETIAAFIAEPVMGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNKS 696
            K+  + IAA I EP+ G GGVI PP  Y  +V+ +  ++  L I DEV    GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +     ++ + RG G+++  EF DN++
Sbjct:  226 KKTGDEIAAVILEPIQGEGGVILPPQGYLTEVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDTLLDGFRQLAREYPNLVHDARGKGMLIAIEFVDNET 400
[Close]
BLAST of CN186141 vs. ExPASy Swiss-Prot
Match: PAT_SALDC (Putrescine aminotransferase OS=Salmonella dublin (strain CT_02021853) GN=patA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.709e-26
Identity = 61/180 (33.89%), Postives = 98/180 (54.44%), Query Frame = 1 
Query:  163 KEGPETIAAFIAEPVMGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNKS 696
            K+  + IAA I EP+ G GGVI PP  Y  +V+ +  ++  L I DEV    GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +     ++ + RG G+++  EF DN++
Sbjct:  226 KKTGDEIAAVILEPIQGEGGVILPPQGYLTEVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDTLLDGFRQLAREYPNLVHDARGKGMLIAIEFVDNET 400
[Close]
BLAST of CN186141 vs. ExPASy Swiss-Prot
Match: PAT_SALCH (Putrescine aminotransferase OS=Salmonella choleraesuis GN=patA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.709e-26
Identity = 61/180 (33.89%), Postives = 98/180 (54.44%), Query Frame = 1 
Query:  163 KEGPETIAAFIAEPVMGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNKS 696
            K+  + IAA I EP+ G GGVI PP  Y  +V+ +  ++  L I DEV    GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +     ++ + RG G+++  EF DN++
Sbjct:  226 KKTGDEIAAVILEPIQGEGGVILPPQGYLTEVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDTLLDGFRQLAREYPNLVHDARGKGMLMAIEFVDNET 400
[Close]
BLAST of CN186141 vs. ExPASy Swiss-Prot
Match: PAT_SALA4 (Putrescine aminotransferase OS=Salmonella agona (strain SL483) GN=patA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.709e-26
Identity = 61/180 (33.89%), Postives = 98/180 (54.44%), Query Frame = 1 
Query:  163 KEGPETIAAFIAEPVMGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNKS 696
            K+  + IAA I EP+ G GGVI PP  Y  +V+ +  ++  L I DEV    GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +     ++ + RG G+++  EF DN++
Sbjct:  226 KKTGDEIAAVILEPIQGEGGVILPPQGYLTEVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDTLLDGFRQLAREYPNLVHDARGKGMLMAIEFVDNET 400
[Close]
BLAST of CN186141 vs. ExPASy Swiss-Prot
Match: PAT_KLEP7 (Putrescine aminotransferase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=patA PE=3 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 4.709e-26
Identity = 60/179 (33.52%), Postives = 96/179 (53.63%), Query Frame = 1 
Query:  163 KEGPETIAAFIAEPVMGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNK 693
            K+  + +AA I EP+ G GGVI PP  Y   V+ +  ++  L I DEV    GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +   +N+  Q  +      DG +  +     ++ E+RG G+++  EF DN+
Sbjct:  226 KKTGDDVAAVILEPIQGEGGVILPPTGYLPAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATVATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLTQNLPAQAAQKGDMLLDGFRLLAQEYPDLVNEVRGKGMLMAIEFVDNE 399
[Close]
BLAST of CN186141 vs. ExPASy Swiss-Prot
Match: PAT_ESCF3 (Putrescine aminotransferase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=patA PE=3 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 4.709e-26
Identity = 61/179 (34.08%), Postives = 96/179 (53.63%), Query Frame = 1 
Query:  163 KEGPETIAAFIAEPVMGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNK 693
            K+  + +AA I EP+ G GGVI PP  Y   V+ +  ++  L I DEV    GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +     ++ E RG G+++  EF DN+
Sbjct:  226 KKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE 399
[Close]
BLAST of CN186141 vs. ExPASy Swiss-Prot
Match: PAT_ECOUT (Putrescine aminotransferase OS=Escherichia coli (strain UTI89 / UPEC) GN=patA PE=3 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 4.709e-26
Identity = 61/179 (34.08%), Postives = 96/179 (53.63%), Query Frame = 1 
Query:  163 KEGPETIAAFIAEPVMGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNK 693
            K+  + +AA I EP+ G GGVI PP  Y   V+ +  ++  L I DEV    GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +     ++ E RG G+++  EF DN+
Sbjct:  226 KKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE 399
[Close]
BLAST of CN186141 vs. ExPASy Swiss-Prot
Match: PAT_ECOSM (Putrescine aminotransferase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=patA PE=3 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 4.709e-26
Identity = 61/179 (34.08%), Postives = 96/179 (53.63%), Query Frame = 1 
Query:  163 KEGPETIAAFIAEPVMGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNK 693
            K+  + +AA I EP+ G GGVI PP  Y   V+ +  ++  L I DEV    GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +     ++ E RG G+++  EF DN+
Sbjct:  226 KKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE 399
[Close]
BLAST of CN186141 vs. ExPASy Swiss-Prot
Match: PAT_ECOSE (Putrescine aminotransferase OS=Escherichia coli (strain SE11) GN=patA PE=3 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 4.709e-26
Identity = 61/179 (34.08%), Postives = 96/179 (53.63%), Query Frame = 1 
Query:  163 KEGPETIAAFIAEPVMGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNK 693
            K+  + +AA I EP+ G GGVI PP  Y   V+ +  ++  L I DEV    GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +     ++ E RG G+++  EF DN+
Sbjct:  226 KKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE 399
[Close]
BLAST of CN186141 vs. ExPASy Swiss-Prot
Match: PAT_ECOLU (Putrescine aminotransferase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=patA PE=3 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 4.709e-26
Identity = 61/179 (34.08%), Postives = 96/179 (53.63%), Query Frame = 1 
Query:  163 KEGPETIAAFIAEPVMGAGGVIPPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNK 693
            K+  + +AA I EP+ G GGVI PP  Y   V+ +  ++  L I DEV    GR G MF C+  +++PD++  AKAL    MPIGA + + EV  V+         F H  T+ G+P++CA A+  + +  E+N+  Q  +      DG +  +     ++ E RG G+++  EF DN+
Sbjct:  226 KKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE 399
The following BLAST results are available for this feature:
BLAST of CN186141 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
PAT_SALEP4.709e-2633.89Putrescine aminotransferase OS=Salmonella enteriti... [more]
PAT_SALDC4.709e-2633.89Putrescine aminotransferase OS=Salmonella dublin (... [more]
PAT_SALCH4.709e-2633.89Putrescine aminotransferase OS=Salmonella cholerae... [more]
PAT_SALA44.709e-2633.89Putrescine aminotransferase OS=Salmonella agona (s... [more]
PAT_KLEP74.709e-2633.52Putrescine aminotransferase OS=Klebsiella pneumoni... [more]
PAT_ESCF34.709e-2634.08Putrescine aminotransferase OS=Escherichia ferguso... [more]
PAT_ECOUT4.709e-2634.08Putrescine aminotransferase OS=Escherichia coli (s... [more]
PAT_ECOSM4.709e-2634.08Putrescine aminotransferase OS=Escherichia coli (s... [more]
PAT_ECOSE4.709e-2634.08Putrescine aminotransferase OS=Escherichia coli (s... [more]
PAT_ECOLU4.709e-2634.08Putrescine aminotransferase OS=Escherichia coli O1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002G21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002G21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186141 ID=CN186141; Name=CN186141; organism=Citrus sinensis; type=EST; length=751bp
GCGGGTATTTCTGGTCTTCCAGCTTTGCACCAAAAATTTGATCTGCCGGC
TCCCTTTGTATTGCACACTGACTGCCCTCATTATTGGCGCTACGCTCATC
CAGGTGAGACAGAGGAGGAGTATTCAACCAGATTAGCCAAAAATTTAGAG
GATCTCATTCTCAAAGAGGGACCAGAGACGATTGCTGCATTTATTGCTGA
GCCTGTCATGGGGGCAGGAGGCGTGATACCTCCTCCTGCGACTTATTTTG
AGAAGGTTCAAGCTGTTGTAAAAAAATATGACATCCTTTTTATAGCAGAT
GAGGTAATTTGTGCATTTGGAAGACTTGGCACAATGTTTGGTTGTGACAA
ATACAGCATTAAACCAGATCTTGTGTCCTTCGCAAAGGCCCTTTCTTCAG
CATATATGCCCATTGGAGCTATTCTTGTGAGTCCCGAAGTTTCAGAAGTC
ATTCACTCTCAAAGCAACACACTTGGTTCTTTCTCTCATGGATTTACTTA
TTCTGGGCATCCTGTTTCCTGTGCCGTTGCCATCGAAGCGCTTAAGATTT
ACAAGGAAAGAAATATTGTTGAGCAAGTAAATAAGATAGCGCCAAAGTTT
CAAGATGGTGTAAAAGCCTTTTCTGATAGTCCCATCATTGGAGAGATTCG
GGGCACTGGTTTGATTCTTGGTACAGAGTTTGCAGACAACAAGTCTCCAA
ATGAACCGTTCCCTCCTGAATGGGGGATAGGTGCATATTTTGGAGCACAG
T
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