CV998106

Overview
NameCV998106
Unique NameCV998106
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length954
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV998106 vs. ExPASy Swiss-Prot
Match: HAT2_ASHGO (Histone acetyltransferase type B subunit 2 OS=Ashbya gossypii GN=HAT2 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 5.962e-38
Identity = 91/242 (37.60%), Postives = 124/242 (51.24%), Query Frame = 3
Query:  216 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLR 941
            + EEY++W  N P +Y+ V    L WPSLT++WLP   + P      Q +I GTHT+  E NYL +A + LP   +  D    +D+ +D   F  AN       +  H  EV RARYMP N  +IAT      + +FD +   SK  +         L  H   GYGL+++    G LLSGSDD  + LWDI AA K KS     I   H+ +V DV WH     +FG+V +D+ L + D R
Sbjct:   44 VEEEYELWNSNVPVMYEFVSETKLTWPSLTIQWLPSDGQSP-----EQSLIFGTHTAGEEVNYLKVATINLPAGIAGLDQGDEEDEANDHSSFAIAN-------KFPHIEEVIRARYMPANSNIIATINGKGTISIFDRTLEESKAQVS-------TLAFHKENGYGLAFNPHISGELLSGSDDTTVALWDIEAAKKPKS-----ILTSHDDIVNDVKWHEFESNVFGTVSEDKTLQVHDKR 261          
BLAST of CV998106 vs. ExPASy Swiss-Prot
Match: HAT2_YEAST (Histone acetyltransferase type B subunit 2 OS=Saccharomyces cerevisiae GN=HAT2 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 4.273e-36
Identity = 85/243 (34.98%), Postives = 129/243 (53.09%), Query Frame = 3
Query:  216 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDI-NAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLR 941
            ++EEY +WK N P +YD V    L WPSLTV+WLP   +     +  Q++I+GTHTS  E NYL  A++ LP +   N+    +               ++I  +  H+ E+ RARYMPQ+P ++A  T++ +  VF YS+       +G  S    L+ H   GY LS+S   +G LLSGSDD  + LW++ +     K +       +H  ++ D  WH  ++ LFG+V +D  L I D+R
Sbjct:   10 VDEEYDLWKSNVPLMYDFVSETRLTWPSLTVQWLPTPVQELDGGFIKQELIIGTHTSGEEENYLKFAEINLPKEILSNEDPQEEAGEEYQSSLPAPRSNIRITAKYEHEEEITRARYMPQDPNIVA--TINGQGTVFLYSRS------EGLQS---TLKFHKDNGYALSFSTLVKGRLLSGSDDHTVALWEVGSGGDPTKPVRTWN--DLHSDIINDNKWHNFNKDLFGTVSEDSLLKINDVR 239          
BLAST of CV998106 vs. ExPASy Swiss-Prot
Match: HAT2_YARLI (Histone acetyltransferase type B subunit 2 OS=Yarrowia lipolytica GN=HAT2 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.164e-33
Identity = 85/253 (33.60%), Postives = 135/253 (53.36%), Query Frame = 3
Query:  210 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLP--LDDSENDARHYDDDRSDFGGFGCANG---KVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKV--HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTP 947
            + INEEYKIWKKN+P+LY++VI   ++ P+LTVEWLPD  +         +++ G+H+S  + +Y+ +A V+LP  L           +  +D      A+G   ++ I+Q I  DGEVN ARY P     IA   V+ ++++FD +   +         P   L+ H+ EG+GL+W+      L+SG+ D+ +  W I  A  + S + +    V  H+  V DV +  + ++L GS  DD  L +WD R P
Sbjct:   42 KAINEEYKIWKKNSPYLYNVVIATVMDHPTLTVEWLPDLFDDITPGSMSARLMFGSHSSGLDKDYIHVASVELPTHLRPETIGLLSQQEGGTDMKQHHDAHGRHKRIAIVQSIYEDGEVNVARYNPLASKQIAAAHVTGDIHIFDRNNIMNSKE---EAKPIYNLKHHTKEGWGLNWNINHADQLVSGAIDSTVAFWKIPEAASDGSCKDVTPHTVYHHDAAVNDVKFSYKMDFLIGSASDDCTLRLWDTRKP 291          
BLAST of CV998106 vs. ExPASy Swiss-Prot
Match: PRW1_SCHPO (RbAp48-related WD40 repeat-containing protein prw1 OS=Schizosaccharomyces pombe GN=prw1 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.386e-33
Identity = 88/250 (35.20%), Postives = 128/250 (51.20%), Query Frame = 3
Query:  210 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLP-LDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIAT-KTVSAEVYVFDYSKHPS-KPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQI-FKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTP 947
            + INEEYKIWKKN+PFLYDL+IT ALEWP ++++W P+++      Y+ QKM LG      +   L +A +QLP L+ +            D         +V I    +H   V  A+ MPQ+   +AT      +V VFD     S     +    P  RL  H+     + W+   +G L+SGS DA +  WD+NA  ++ S   +++    HE  V DV +H +H+ L  SV  DQYL + D+R P
Sbjct:   24 KCINEEYKIWKKNSPFLYDLIITRALEWPCMSLQWYPEQQIFAEHGYTEQKMFLGVRADVGK-YLLAVASIQLPYLNQTVPPTTMEGASAGDESSL-----RVNISNLYSHPESVCSAKLMPQDDSCVATVGNYHNDVLVFDKESFESYSSASESPLKPKYRLTKHTQPCTSVCWNFLSKGTLVSGSQDATLSCWDLNAYNESDSASVLKVHISSHEKQVSDVRFHYKHQDLLASVSYDQYLHVHDIRRP 267          
BLAST of CV998106 vs. ExPASy Swiss-Prot
Match: HAT2_CANAL (Histone acetyltransferase type B subunit 2 OS=Candida albicans GN=HAT2 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.576e-30
Identity = 80/246 (32.52%), Postives = 124/246 (50.41%), Query Frame = 3
Query:  216 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV 953
            I EEY++W+KN  ++Y+ V   AL WPSLT++WLP+     G      K++LGTHTS    N L +A  QL  D +                   AN K++ +Q++ ++ E+ RARYMPQ+  ++AT     EV +++                      H+  GYGLSW+  ++G L++G+DD  +C+ D      NK+     I K    +V DV WH  +  LF SV +D ++ ++D R   V
Sbjct:   11 IKEEYQLWRKNCRYMYEFVSETALMWPSLTIQWLPNYTTTNG--LIDAKLLLGTHTSNQSANQLKVASTQLSADPNVK-----------------ANSKIKTVQKLENNAEICRARYMPQDANIVATINGLGEVDLYNLDTETRYS----------HFAPHTKNGYGLSWNPKQKGLLVTGADDNFVCVTDTTT---NKTTFKSDIQK---DIVNDVKWHQFNGNLFASVSEDSHVYLFDARDNKV 221          
BLAST of CV998106 vs. ExPASy Swiss-Prot
Match: MSI4_ARATH (WD-40 repeat-containing protein MSI4 OS=Arabidopsis thaliana GN=MSI4 PE=1 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 1.166e-25
Identity = 86/272 (31.62%), Postives = 127/272 (46.69%), Query Frame = 3
Query:  216 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQ---VQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACS--PDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDI----------------------NAAPKNKS--LEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT 944
            ++E+Y  WK   P LYD +  H L WPSL+  W P  E+   K+   Q++ L   T  + PN L++A    V+  +  +E+ ++  ++ RS F         V+  + I H GEVNR R +PQN  ++AT T S +V ++D    P++  + GA +  PDL L GH             E  +LSG  D  + LW I                          KN+S  +    ++  HE  VEDVA+       F SVGDD  L++WD RT
Sbjct:   64 VDEKYSQWKGLVPILYDWLANHNLVWPSLSCRWGPQLEQATYKNR--QRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPF---------VKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVETQPNRHAVLGAANSRPDLILTGHQDNAEFALAMCPTEPFVLSGGKDKSVVLWSIQDHITTIGTDSKSSGSIIKQTGEGTDKNESPTVGPRGVYHGHEDTVEDVAFSPTSAQEFCSVGDDSCLILWDART 324          
BLAST of CV998106 vs. ExPASy Swiss-Prot
Match: MSI5_ARATH (WD-40 repeat-containing protein MSI5 OS=Arabidopsis thaliana GN=MSI5 PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 9.241e-23
Identity = 82/269 (30.48%), Postives = 121/269 (44.98%), Query Frame = 3
Query:  216 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGA--CSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDIN-----AAPKNKS-------------------LEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT 944
            +++ Y  WK   P LYD  + H L WPSL+  W P  E+   K    Q++ L   T+ + PN L++A  +  ++   N+  H     S F         V+  + I H GEVNR R +PQN  ++AT T S ++ +++    P +  + GA    PDL L GH  +          E  +LSG  D  + LW+I      A   +KS                   +    I+  H+  VEDVA+       F SVGDD  L++WD RT
Sbjct:   54 VDDTYSQWKTLLPILYDSFVNHTLVWPSLSCRWGPQLEQAGSK---TQRLYLSEQTNGSVPNTLVIANCET-VNRQLNEKAH-----SPF---------VKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDILIWNTETQPDRYAVLGAPDSRPDLLLIGHQDDAEFALAMCPTEPFVLSGGKDKSVILWNIQDHITMAGSDSKSPGSSFKQTGEGSDKTGGPSVGPRGIYNGHKDTVEDVAFCPSSAQEFCSVGDDSCLMLWDART 304          
BLAST of CV998106 vs. ExPASy Swiss-Prot
Match: MSI1_YEAST (Chromatin assembly factor 1 subunit p50 OS=Saccharomyces cerevisiae GN=MSI1 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.517e-20
Identity = 71/269 (26.39%), Postives = 121/269 (44.98%), Query Frame = 3
Query:  216 INEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEP--NYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGC----ANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSK------------HPSKPPLDGACSPDLRLRGHST------EGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEG--VVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT 944
            + E Y  WKKNT  LYD + T++ +WPSLT ++ PD +    +     +++L + TS  +P    + ++++        +   ++D D  +F         +   V  I     +GE NRARY+PQNP +IA  +    +Y+FD +K            HP +  L G+      +    T      E   L+W+  +E  LLS   + Q+ +WDI        +  + +  ++     V DV W   H+ LF +  +   + + DLRT
Sbjct:   19 LQERYSHWKKNTKLLYDYLNTNSTKWPSLTCQFFPDLDTTSDE----HRILLSSFTSSQKPEDETIYISKISTLGHIKWSSLNNFDMDEMEFKPENSTRFPSKHLVNDISIFFPNGECNRARYLPQNPDIIAGASSDGAIYIFDRTKHGSTRIRQSKISHPFETKLFGSHGVIQDVEAMDTSSADINEATSLAWNLQQEALLLSSHSNGQVQVWDIKQYSHENPIIDLPLVSINSDGTAVNDVTWMPTHDSLFAACTEGNAVSLLDLRT 283          
BLAST of CV998106 vs. ExPASy Swiss-Prot
Match: GRWD1_DICDI (Glutamate-rich WD repeat-containing protein 1 OS=Dictyostelium discoideum GN=grwd1 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.994e-17
Identity = 67/241 (27.80%), Postives = 112/241 (46.47%), Query Frame = 3
Query:  261 YDLVITHALEWPSLTVEWLPDREEPPGKDYS-VQKMILGTHTSENEPNYLMLAQVQL------PLDDSENDARHYDDDRSDFGGFGCANGKVQI-IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKH----PSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTP 947
            YD++ + ++EWP L+   + D        Y     ++ GT   E + N +++ + +         +DS++D    DD+ SD       +   ++ +  INH+G VNR R M Q   ++AT + +  VY+++ + H     ++       +P   +  HS EGY L WS    G L +G  D    ++  NA+      +  Q FK H   VED+ W    E +F S   DQ + IWD+R P
Sbjct:   92 YDMMHSMSVEWPCLSFHPIKDELGAQRNKYPHTMYLVAGTQADEAKNNKVIIMKAKQLHKTKHDDEDSDDDEDSDDDEESDDEDDEDKDVDPELQLAFINHNGAVNRIRSMDQQSNIVATWSDNRSVYIWNIANHLKALDNETVAPKQTAPLHTISNHSIEGYALDWSPKIAGRLATG--DCNNSIFVTNASESTWKTDT-QAFKGHTESVEDIQWSPSEEKVFASCSIDQTVRIWDIRKP 329          
The following BLAST results are available for this feature:
BLAST of CV998106 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
HAT2_ASHGO5.962e-3837.60Histone acetyltransferase type B subunit 2 OS=Ashb... [more]
HAT2_YEAST4.273e-3634.98Histone acetyltransferase type B subunit 2 OS=Sacc... [more]
HAT2_YARLI1.164e-3333.60Histone acetyltransferase type B subunit 2 OS=Yarr... [more]
PRW1_SCHPO3.386e-3335.20RbAp48-related WD40 repeat-containing protein prw1... [more]
HAT2_CANAL4.576e-3032.52Histone acetyltransferase type B subunit 2 OS=Cand... [more]
MSI4_ARATH1.166e-2531.62WD-40 repeat-containing protein MSI4 OS=Arabidopsi... [more]
MSI5_ARATH9.241e-2330.48WD-40 repeat-containing protein MSI5 OS=Arabidopsi... [more]
MSI1_YEAST2.517e-2026.39Chromatin assembly factor 1 subunit p50 OS=Sacchar... [more]
GRWD1_DICDI1.994e-1727.80Glutamate-rich WD repeat-containing protein 1 OS=D... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_Q-4_T7 Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07-153 Citrus sinensis cDNA clone TC52_D07_057, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV998106 ID=CV998106; Name=CV998106; organism=Citrus sinensis; type=EST; length=954bp
TTTTTTGGGTTCTATTTCGTCGAGAGAAGGGAGCAATAGGTTCATCTGCT
GAGATAGAGTTAGGGGAAGCAAATAATTGTAAAAGCAGATGAATGGAGTT
GCATCTACCTCAGTTGCAGAAGTAGGACTTTGGCGGCAACAAAACTTAAG
AAATTGAGCGAAGAGCAATGGGAAAAGACGAGGAAGAGATGAGGGGAGAG
ATAGAAGAGAGGTTGATAAATGAAGAATACAAGATTTGGAAGAAGAACAC
TCCGTTTCTGTATGATCTTGTCATCACACATGCCCTTGAATGGCCTTCTC
TGACTGTTGAGTGGTTGCCTGATAGAGAAGAACCCCCTGGCAAAGACTAT
TCTGTTCAGAAAATGATCCTTGGGACACACACATCTGAGAATGAGCCCAA
CTATCTCATGCTTGCTCAGGTCCAGCTTCCTCTTGATGACTCAGAGAATG
ATGCCCGCCATTACGATGATGACCGCTCTGATTTTGGTGGCTTTGGCTGT
GCCAATGGCAAGGTGCAAATAATTCAGCAAATAAACCATGATGGAGAGGT
TAACCGGGCCCGTTATATGCCTCAGAATCCATTTCTTATTGCCACGAAGA
CTGTTAGTGCTGAGGTCTATGTTTTTGATTATAGCAAACACCCTTCTAAA
CCTCCTCTGGATGGTGCATGTAGTCCTGATCTGAGGCTGAGGGGCCATAG
CACTGAAGGATACGGTTTATCGTGGAGCAAGTTCAAGGAAGGTCATCTGT
TAAGTGGTTCTGATGATGCTCAAATATGTTTATGGGACATCAATGCAGCT
CCTAAGAATAAGTCTCTTGAGGCCATGCAGATTTTTAAGGTTCATGAAGG
TGTTGTAGAAGATGTAGCATGGCATCTGAGGCATGAATACTTGTTTGGTT
CTGTTGGGGATGATCAATACCTGCTTATATGGGATCTACGGACACCATCA
GTGA
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