CV998102

Overview
NameCV998102
Unique NameCV998102
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length904
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV998102_ssr78 microsatellite CV998102_ssr78:78..89. BLAST: Citrus ESTs to Prunus persica proteins V1
CV998102_ssr58 microsatellite CV998102_ssr58:58..72. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1610 contig Csv1_Contig1610:91..994. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV998102 vs. ExPASy Swiss-Prot
Match: OS13_SOLCO (Osmotin-like protein OSML13 OS=Solanum commersonii PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.318e-39
Identity = 96/223 (43.05%), Postives = 116/223 (52.02%), Query Frame = -2
Query:  175 ATTITLFNKCEHPVWPGIQASAGKPLLARGGFKLPPNKAYTIRLPP-LWSGRFWGRHGCRFDASGRGRCATGDCGGSLFCNGIGGSPPATLAEITLGQ--QQDFYDVSLVDGYNIAMSILPIRGS-GKCSYAGCVSDLNLMCPAGLQVRSNSRVVACKSACFAFNSPRYCCTGSFGNPQSCKPTAYSRIFKAACPRAYSYAYDDPTSIATCT--GSNYLLTFC 825
            A TI + N C + VW     +A  P+   GG +L   + + I  P      R WGR  C FD +GRG C TGDCGG L C G  G PP TLAE  L Q    DF+D+SLVDG+NI M+  P   S GKC    C +++N  CP  L+V        C + C  F   +YCCT        C PT  SR FK  CP AYSY  DDPTS  TC    +NY + FC
Sbjct:   21 AATIEVRNNCPYTVW-----AASTPI--GGGRRLDRGQTWVINAPRGTKMARIWGRTNCNFDGAGRGSCQTGDCGGVLQCTG-WGKPPNTLAEYALDQFSNLDFWDISLVDGFNIPMTFAPTNPSGGKCHAIHCTANINGECPGSLRVPG-----GCNNPCTTFGGQQYCCTQG-----PCGPTDLSRFFKQRCPDAYSYPQDDPTSTFTCPSGSTNYRVVFC 225          
BLAST of CV998102 vs. ExPASy Swiss-Prot
Match: TPM1_SOLLC (Osmotin-like protein TPM-1 (Fragment) OS=Solanum lycopersicum GN=TPM-1 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 5.010e-39
Identity = 95/223 (42.60%), Postives = 114/223 (51.12%), Query Frame = -2
Query:  175 ATTITLFNKCEHPVWPGIQASAGKPLLARGGFKLPPNKAYTIRLPP-LWSGRFWGRHGCRFDASGRGRCATGDCGGSLFCNGIGGSPPATLAEITLGQ--QQDFYDVSLVDGYNIAMSILPIRGS-GKCSYAGCVSDLNLMCPAGLQVRSNSRVVACKSACFAFNSPRYCCTGSFGNPQSCKPTAYSRIFKAACPRAYSYAYDDPTSIATCT--GSNYLLTFC 825
            A T  + N C + VW     +A  P+   GG +L   + + I  P      R WGR  C FD  GRG C TGDCGG L C G  G PP TLAE  L Q    DF+D+SLVDG+NI M+  P   S GKC    C +++N  CP  L+V        C + C  F   +YCCT        C PT  SR FK  CP AYSY  DDPTS  TC    +NY + FC
Sbjct:   13 AATFEVRNNCPYTVW-----AASTPI--GGGRRLDRGQTWVINAPRGTKMARIWGRTNCNFDGDGRGSCQTGDCGGVLQCTG-WGKPPNTLAEYALDQFSNLDFWDISLVDGFNIPMTFAPTNPSGGKCHAIHCTANINGECPGSLRVPG-----GCNNPCTTFGGQQYCCTQG-----PCGPTDLSRFFKQRCPDAYSYPQDDPTSTFTCPSGSTNYRVVFC 217          
BLAST of CV998102 vs. ExPASy Swiss-Prot
Match: P21_SOYBN (Protein P21 OS=Glycine max PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.116e-38
Identity = 90/214 (42.06%), Postives = 118/214 (55.14%), Query Frame = -2
Query:  175 NKCEHPVWPGIQASAGKPLLARGGFKLPPNKAYTIRLPPLWSG-RFWGRHGCRFDASGRGRCATGDCGGSLFCNGIGGSPPATLAEITLG--QQQDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCPAGLQVRSNSRVVACKSACFAFNSPRYCCTGSFGNPQSCKPTAYSRIFKAACPRAYSYAYDDPTSIATCT-GSNYLLTFC 804
            N+C + VW     +A  P+   GG +L P +++++ +P    G R W R GC FD SGRG C TGDCGG L C    G+PP TLAE  L      DF+D+SLVDG+N+ M   P   +G      C +D+N  CP+ L+ +       C + C  F + +YCC     N  SC PT YSR FK  CP AYSY  DDP S  TC  G++Y + FC
Sbjct:    7 NRCTYTVW-----AASVPV--GGGVQLNPGQSWSVDVPAGTKGARVWARTGCNFDGSGRGGCQTGDCGGVLDCKAY-GAPPNTLAEYGLNGFNNLDFFDISLVDGFNVPMDFSP-TSNGCTRGISCTADINGQCPSELKTQG-----GCNNPCTVFKTDQYCC-----NSGSCGPTDYSRFFKQRCPDAYSYPKDDPPSTFTCNGGTDYRVVFC 201          
BLAST of CV998102 vs. ExPASy Swiss-Prot
Match: THM2_THADA (Thaumatin-2 OS=Thaumatococcus daniellii PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.486e-38
Identity = 93/222 (41.89%), Postives = 118/222 (53.15%), Query Frame = -2
Query:  175 KATTITLFNKCEHPVWPGIQASAGKPLLARGGFKLPPNKAYTIRLPP-LWSGRFWGRHGCRFDASGRGRCATGDCGGSLFCNGIGGSPPATLAEITLGQQ-QDFYDVSLVDGYNIAMSILPI-RGSGKCSYAGCVSDLNLMCPAGLQVRSNSRVVACKSACFAFNSPRYCCTGSFGNPQSCKPTAYSRIFKAACPRAYSYAYDDPTSIATCTG-SNYLLTFC 828
            +A T  + N+C + VW    AS G   L  GG +L   +++TI + P    G+ W R  C FD SGRG C TGDCGG L C   G  PP TLAE +L Q  +D+ D+S + G+N+ M   P  RG   C    C +D+   CPA L+         C  AC  F +  YCCT        C PT YSR FK  CP A+SY  D PT++ TC G SNY +TFC
Sbjct:   21 RAATFEIVNRCSYTVWAA--ASKGDAALDAGGRQLNSGESWTINVEPGTKGGKIWARTDCYFDDSGRGICRTGDCGGLLQCKRFG-RPPTTLAEFSLNQYGKDYIDISNIKGFNVPMDFSPTTRG---CRGVRCAADIVGQCPAKLKAPGGG----CNDACTVFQTSEYCCTTG-----KCGPTEYSRFFKRLCPDAFSYVLDKPTTV-TCPGSSNYRVTFC 226          
BLAST of CV998102 vs. ExPASy Swiss-Prot
Match: OLPA_TOBAC (Osmotin-like protein OS=Nicotiana tabacum GN=OLPA PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 4.241e-38
Identity = 92/216 (42.59%), Postives = 115/216 (53.24%), Query Frame = -2
Query:  175 NKCEHPVWPGIQASAGKPLLARGGFKLPPNKAYTIRLPP-LWSGRFWGRHGCRFDASGRGRCATGDCGGSLFCNGIGGSPPATLAEITLGQ--QQDFYDVSLVDGYNIAMSILPIR-GSGKCSYAGCVSDLNLMCPAGLQVRSNSRVVACKSACFAFNSPRYCCTGSFGNPQSCKPTAYSRIFKAACPRAYSYAYDDPTSIATCTG--SNYLLTFC 804
            N C + VW     +A  P+   GG +L   +++    PP     R WGR  C FD +GRG C TGDCGG L C G  G PP TLAE  L Q    DF+D+S++DG+NI MS  P + G GKC    C +++N  CP  L+V        C + C  F   +YCCT        C PT  SR FK  CP AYSY  DDPTS  TCT   ++Y + FC
Sbjct:   29 NNCPYTVW-----AAATPV--GGGRRLERGQSWWFWAPPGTKMARIWGRTNCNFDGAGRGWCQTGDCGGVLECKG-WGKPPNTLAEYALNQFSNLDFWDISVIDGFNIPMSFGPTKPGPGKCHGIQCTANINGECPGSLRVPG-----GCNNPCTTFGGQQYCCTQG-----PCGPTELSRWFKQRCPDAYSYPQDDPTSTFTCTSWTTDYKVMFC 226          
BLAST of CV998102 vs. ExPASy Swiss-Prot
Match: OS35_SOLCO (Osmotin-like protein OSML15 OS=Solanum commersonii PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 5.539e-38
Identity = 92/216 (42.59%), Postives = 114/216 (52.78%), Query Frame = -2
Query:  175 NKCEHPVWPGIQASAGKPLLARGGFKLPPNKAYTIRLPP-LWSGRFWGRHGCRFDASGRGRCATGDCGGSLFCNGIGGSPPATLAEITLGQ--QQDFYDVSLVDGYNIAMSILPIR-GSGKCSYAGCVSDLNLMCPAGLQVRSNSRVVACKSACFAFNSPRYCCTGSFGNPQSCKPTAYSRIFKAACPRAYSYAYDDPTSIATCTG--SNYLLTFC 804
            N C + VW     +A  P+   GG +L   +++    PP     R WGR  C FD +GRG C TGDCGG L C G  G PP TLAE  L Q    DF+D+S++DG+NI MS  P   G GKC    CV+++N  CP  L+V        C + C  F   +YCCT        C PT  SR FK  CP AYSY  DDPTS  TC    ++Y + FC
Sbjct:   29 NNCPYTVW-----AAATPI--GGGRRLERGQSWWFWAPPGTKMARIWGRTNCNFDGAGRGWCQTGDCGGVLECKG-WGKPPNTLAEYALNQFSNLDFWDISVIDGFNIPMSFGPTNPGPGKCHPIQCVANINGECPGSLRVPG-----GCNNPCTTFGGQQYCCTQG-----PCGPTDLSRFFKQRCPDAYSYPQDDPTSTFTCQSWTTDYKVMFC 226          
BLAST of CV998102 vs. ExPASy Swiss-Prot
Match: THM1_THADA (Thaumatin-1 OS=Thaumatococcus daniellii PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 6.124e-37
Identity = 91/219 (41.55%), Postives = 117/219 (53.42%), Query Frame = -2
Query:  175 TITLFNKCEHPVWPGIQASAGKPLLARGGFKLPPNKAYTIRLPPLWSG-RFWGRHGCRFDASGRGRCATGDCGGSLFCNGIGGSPPATLAEITLGQQ-QDFYDVSLVDGYNIAMSILPI-RGSGKCSYAGCVSDLNLMCPAGLQVRSNSRVVACKSACFAFNSPRYCCTGSFGNPQSCKPTAYSRIFKAACPRAYSYAYDDPTSIATCTG-SNYLLTFC 819
            T  + N+C + VW    AS G   L  GG +L   +++TI + P  +G + W R  C FD SG G C TGDCGG L C   G  PP TLAE +L Q  +D+ D+S + G+N+ M+  P  RG   C    C +D+   CPA L+         C  AC  F +  YCCT        C PT YSR FK  CP A+SY  D PT++ TC G SNY +TFC
Sbjct:    2 TFEIVNRCSYTVWAA--ASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYFDDSGSGICKTGDCGGLLRCKRFG-RPPTTLAEFSLNQYGKDYIDISNIKGFNVPMNFSPTTRG---CRGVRCAADIVGQCPAKLKAPGGG----CNDACTVFQTSEYCCTTG-----KCGPTEYSRFFKRLCPDAFSYVLDKPTTV-TCPGSSNYRVTFC 204          
BLAST of CV998102 vs. ExPASy Swiss-Prot
Match: TLP_ACTDE (Thaumatin-like protein OS=Actinidia deliciosa GN=tlp PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 5.732e-35
Identity = 86/222 (38.74%), Postives = 108/222 (48.65%), Query Frame = -2
Query:  175 KATTITLFNKCEHPVWPGIQASAGKPLLARGGFKLPPNKAYTIRLPPLWSGRFWGRHGCRFDASGRGRCATGDCGGSLFCNGIGGSPPATLAEITLGQ--QQDFYDVSLVDGYNIAMSILPIRGSGKCSYA-GCVSDLNLMCPAGLQVRSNSRVVACKSACFAFNSPRYCCTGSFGNPQSCKPTAYSRIFKAACPRAYSYAYDDPTSIATC-TGSNYLLTFC 828
            +  T  + N C   VW       GK L     + + P              R W R GC FD +GRG+C TGDC G L C    G PP TLAE  L Q    DF+D+SLVDG+N+AM   P   SG C+    C +D+N  CP  L+         C + C  F + +YCC     N  +C  T +S+ FK  CP AYSY  DD TS  TC  G+NY + FC
Sbjct:   23 RGATFNIINNCPFTVWAAAVPGGGKRLDRGQNWIINPGAGTK-------GARVWPRTGCNFDGAGRGKCQTGDCNGLLQCQAF-GQPPNTLAEYALNQFNNLDFFDISLVDGFNVAMEFSPT--SGGCTRGIKCTADINGQCPNELRAPG-----GCNNPCTVFKTDQYCC-----NSGNCGLTNFSKFFKDRCPDAYSYPKDDQTSTFTCPAGTNYKVVFC 224          
BLAST of CV998102 vs. ExPASy Swiss-Prot
Match: TLP_ORYSJ (Thaumatin-like protein OS=Oryza sativa subsp. japonica GN=Os12g0628600 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 5.196e-28
Identity = 71/155 (45.81%), Postives = 89/155 (57.42%), Query Frame = -2
Query:  367 ATTITLFNKCEHPVWPGIQASAGKPLLARGGFKLPPNKAYTIRLPP-LWSGRFWGRHGCRFDASGRGRCATGDCGGSLFCNGIGGSPPATLAEITLGQQQDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCP-AGLQVRSNSRVVAC 825
            A T T+ N+C   VWP     A  P+   GG +L P + +TI +P    SGR WGR GC FD SGRG CATGDC G+L C  + G  P TLAE T+G  QDFYD+S++DGYN+AMS         CS    V+  +  CP A L    N++  AC
Sbjct:   26 AATFTITNRCSFTVWP-----AATPV--GGGVQLSPGQTWTINVPAGTSSGRVWGRTGCSFDGSGRGSCATGDCAGALSCT-LSGQKPLTLAEFTIGGSQDFYDLSVIDGYNVAMSF-------SCSSGVTVTCRDSRCPDAYLFPEDNTKTHAC 165          
BLAST of CV998102 vs. ExPASy Swiss-Prot
Match: RST3_AVESA (Thaumatin-like pathogenesis-related protein 3 OS=Avena sativa GN=RASTL-3 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.951e-23
Identity = 64/138 (46.38%), Postives = 80/138 (57.97%), Query Frame = -2
Query:  436 FSHNIKATTITLFNKCEHPVWPGIQASAGKPLLARGGFKLPPNKAYTIRLPPLWS-GRFWGRHGCRFDASGRGRCATGDCGGSLFCNGIGGSPPATLAEITLGQQQDFYDVSLVDGYNIAMSILPIRGSG-KCSYAGC 843
            F+    A T  + N C   VWP     AG P+   GGF+L   ++  I +P   S GR WGR GC F+ +GRG CATGDC G+L C   G   PATLAE T+G  QDFYD+S++DGYN+AM      G   KC  +GC
Sbjct:   15 FAAGASAATFRITNNCGFTVWP-----AGIPV--GGGFQLNSKQSSNINVPAGTSAGRIWGRTGCSFN-NGRGSCATGDCAGALSCTLSG--QPATLAEYTIGGSQDFYDISVIDGYNLAMDFSCSTGVALKCRDSGC 142          
The following BLAST results are available for this feature:
BLAST of CV998102 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
OS13_SOLCO1.318e-3943.05Osmotin-like protein OSML13 OS=Solanum commersonii... [more]
TPM1_SOLLC5.010e-3942.60Osmotin-like protein TPM-1 (Fragment) OS=Solanum l... [more]
P21_SOYBN1.116e-3842.06Protein P21 OS=Glycine max PE=1 SV=1[more]
THM2_THADA2.486e-3841.89Thaumatin-2 OS=Thaumatococcus daniellii PE=2 SV=1[more]
OLPA_TOBAC4.241e-3842.59Osmotin-like protein OS=Nicotiana tabacum GN=OLPA ... [more]
OS35_SOLCO5.539e-3842.59Osmotin-like protein OSML15 OS=Solanum commersonii... [more]
THM1_THADA6.124e-3741.55Thaumatin-1 OS=Thaumatococcus daniellii PE=1 SV=1[more]
TLP_ACTDE5.732e-3538.74Thaumatin-like protein OS=Actinidia deliciosa GN=t... [more]
TLP_ORYSJ5.196e-2845.81Thaumatin-like protein OS=Oryza sativa subsp. japo... [more]
RST3_AVESA2.951e-2346.38Thaumatin-like pathogenesis-related protein 3 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_Q-1_T7 Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07-153 Citrus sinensis cDNA clone TC49_A07_063, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV998102 ID=CV998102; Name=CV998102; organism=Citrus sinensis; type=EST; length=904bp
TTTTTTTTTTTTTTTTTGATACCAACAAACTACCGTACCATGATATTATT
ACTAGTAAACATAACATAACATATGATATAATAATAATAATCTTATCTAT
TACAAATGAACTTGATAGCGTATGTAGTAGTAGTGGTAGATAATGGGTAT
AAAAATCTAACGGCGATGGCGGGGGCAGAAAGTGAGCAAGTAGTTGCTGC
CGGTGCAAGTAGCAATACTAGTGGGATCATCATAAGCATAGCTGTAAGCT
CTGGGACAAGCGGCCTTGAAAATCCTGGAGTAAGCAGTGGGCTTGCAGGA
TTGAGGATTCCCAAAGCTCCCAGTGCAGCAATACCTGGGCGAGTTGAAAG
CGAAACAAGCACTTTTGCAGGCCACCACTCTGCTGTTGGACCTCACTTGT
AGCCCCGCGGGACACATCAAGTTCAGGTCACTCACACACCCAGCGTAGCT
GCATTTCCCGGAGCCTCTGATGGGCAAAATCGACATTGCGATGTTGTAAC
CGTCGACCAGGCTCACGTCGTAGAAGTCCTGCTGCTGCCCCAGCGTGATT
TCGGCGAGGGTGGCCGGCGGGCTGCCGCCTATGCCGTTGCAGAAGAGCGA
TCCGCCGCAGTCCCCGGTGGCGCAGCGGCCCCGGCCTGAGGCGTCGAACC
TGCATCCATGGCGACCCCAGAAGCGCCCGGACCAGAGGGGCGGTAGGCGT
ATGGTGTAGGCCTTGTTTGGTGGGAGCTTGAAGCCGCCACGTGCCAGTAG
TGGCTTGCCTGCGCTCGCTTGTATTCCGGGCCAAACTGGGTGCTCGCATT
TGTTGAATAATGTGATTGTTGTAGCTTTGATATTGTGAGAGAAGAGGACG
ATGGTGGTGAGCAAGAGAGCGAGTAGAGATCTAAGCAGCATTGTTACTGC
CATG
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