CV998091

Overview
NameCV998091
Unique NameCV998091
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length968
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV998091 vs. ExPASy Swiss-Prot
Match: FIXB_RHISN (Protein fixB OS=Rhizobium sp. (strain NGR234) GN=fixB PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.116e-31
Identity = 87/258 (33.72%), Postives = 132/258 (51.16%), Query Frame = -3
Query:  181 EPWAKLVHMIQQREKYSHIISASGSFGKNVLPRAAALLDVSPITDV----IEISGSSQFVRPIYAGNALCTVRYTGANPCMLTVRATSFPMPKSSAESRSNGASISQVDLSALDEDSIGKSRYVKHTSQDAE-RPDLGSARIVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPNDLQVGQTGKIVAPELYMAFGVSGAIQHLAGMRDSKVIVAVNKDADAPIFQVADYGLVGDLFEVIPELLEKFPEK 939
            EP+ K +  +    K   ++  + + G+++    A  L      D     ++  GS    RP + G+ LCT+      P M TVR     MP+ S +       + + D   L+ED + K   V   S D     +L  A +VV GG GL +AEN  +I+ LA  +G   G +R +V  G++P D Q+GQTGK + P+LY+A G+SGA+QH  G+  + +IVA+N D  APIF  A  G+V D    +P L E F ++
Sbjct:  106 EPFTKALTDLVITHKPEILLLGATTLGRDLAGSVATTLLTGLTADCTGLDVDEDGSLAATRPTFGGSLLCTIYTLNCRPQMATVRPRVMRMPQRSNKPIGR---VIRHDWRMLEEDIVTK--VVGFLSDDRSGNANLAYADVVVAGGLGLSNAENLLLIKDLALTIGGDYGCSRPLVQKGWMPADRQIGQTGKTIRPKLYIAAGISGAVQHRVGVEGADLIVAINTDPHAPIFDFAHVGVVTDAVSFLPALTEAFTKR 358          
BLAST of CV998091 vs. ExPASy Swiss-Prot
Match: YDIR_ECOLI (Putative electron transfer flavoprotein subunit ydiR OS=Escherichia coli (strain K12) GN=ydiR PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.256e-23
Identity = 53/124 (42.74%), Postives = 82/124 (66.13%), Query Frame = -3
Query:  193 AERPDLGSARIVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDA-GFVPNDLQVGQTGKIVAPELYMAFGVSGAIQHLAGMRDSKVIVAVNKDADAPIFQVADYGLVGDLFEVIPELLEK 561
            A   DL  A+ VV  GRGL + ++ KM+ +LA  L A VG +R + +   ++  +  +G +G ++  +LY+  G+SG IQH+ G   +KVIVA+NKD +APIF  ADYGLVGD+++V+P L+ +
Sbjct:  186 ASSVDLSKAKRVVGVGRGLAAQDDLKMVHELAAVLNAEVGCSRPIAEGENWMERERYIGVSGVLLKSDLYLTLGISGQIQHMVGGNGAKVIVAINKDKNAPIFNYADYGLVGDIYKVVPALISQ 309          
BLAST of CV998091 vs. ExPASy Swiss-Prot
Match: ETFA_METME (Electron transfer flavoprotein subunit alpha OS=Methylophilus methylotrophus GN=etfA PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 9.473e-23
Identity = 64/180 (35.56%), Postives = 101/180 (56.11%), Query Frame = -3
Query:  202 VRYTGANPCMLTVRATSFPMPKSSAESRSNGASISQVDLSALDEDSIGKSRYVKHTSQDAERPDLGSARIVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPNDLQVGQTGKIVAP-ELYMAFGVSGAIQHLAGMRDSKVIVAVNKDADAPIFQVADYGLVGDLFEVIPEL 738
            V + G +  +LT+R + F  P   A S      +S VD  ++   S  K         D    D+ +   +++ GRG+    N +   +LA++ GA +  +R + DAG++P   QVGQ+GK+V   +LY+A G+SG+IQH+AGM+    I+AVN D  A IF +A YG+V D+F++  EL
Sbjct:  144 VDFPGKSTVVLTIRPSVFK-PLEGAGS----PVVSNVDAPSVQSRSQNKDYVEVGGGNDI---DITTVDFIMSIGRGIGEETNVEQFRELADEAGATLCCSRPIADAGWLPKSRQVGQSGKVVGSCKLYVAMGISGSIQHMAGMKHVPTIIAVNTDPGASIFTIAKYGIVADIFDIEEEL 315          
BLAST of CV998091 vs. ExPASy Swiss-Prot
Match: FIXB_ESCF3 (Protein fixB OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=fixB PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.616e-22
Identity = 53/121 (43.80%), Postives = 80/121 (66.12%), Query Frame = -3
Query:  190 DLGSARIVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVD-AGFVPNDLQVGQTGKIVAPELYMAFGVSGAIQHLAGMRDSKVIVAVNKDADAPIFQVADYGLVGDLFEVIPELLEKF 549
            DL  AR+VV+ GRG+ S EN  + E+L + +GA +  +R V +   ++ ++  VG +  ++ PELY+A G+SG IQH+ G   S+ I A+NKD +APIFQ ADYG+VGD  +++P L   F
Sbjct:  191 DLDKARLVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWMEHERYVGISNLMLKPELYLAVGISGQIQHMVGANASQTIFAINKDKNAPIFQYADYGIVGDAVKILPALTAAF 311          
BLAST of CV998091 vs. ExPASy Swiss-Prot
Match: FIXB_ECO24 (Protein fixB OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=fixB PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.110e-22
Identity = 52/118 (44.07%), Postives = 80/118 (67.80%), Query Frame = -3
Query:  199 DLGSARIVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVD-AGFVPNDLQVGQTGKIVAPELYMAFGVSGAIQHLAGMRDSKVIVAVNKDADAPIFQVADYGLVGDLFEVIPELL 549
            DL  AR+VV+ GRG+ S EN  + E+L + +GA +  +R V +   ++ ++  VG +  ++ PELY+A G+SG IQH+ G   S+ I A+NKD +APIFQ ADYG+VGD  +++P L+
Sbjct:  191 DLDKARLVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWMEHERYVGISNLMLKPELYLAVGISGQIQHMVGANASQTIFAINKDKNAPIFQYADYGIVGDAVKILPALI 308          
BLAST of CV998091 vs. ExPASy Swiss-Prot
Match: FIXB_SHISS (Protein fixB OS=Shigella sonnei (strain Ss046) GN=fixB PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.600e-22
Identity = 52/117 (44.44%), Postives = 79/117 (67.52%), Query Frame = -3
Query:  202 DLGSARIVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVD-AGFVPNDLQVGQTGKIVAPELYMAFGVSGAIQHLAGMRDSKVIVAVNKDADAPIFQVADYGLVGDLFEVIPEL 549
            DL  AR+VV+ GRG+ S EN  + E+L + +GA +  +R V +   ++ ++  VG +  ++ PELY+A G+SG IQH+ G   S+ I A+NKD +APIFQ ADYG+VGD  +++P L
Sbjct:  191 DLDKARLVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWMEHERYVGISNLMLKPELYLAVGISGQIQHMVGANASQTIFAINKDKNAPIFQYADYGIVGDAVKILPAL 307          
BLAST of CV998091 vs. ExPASy Swiss-Prot
Match: FIXB_SHIFL (Protein fixB OS=Shigella flexneri GN=fixB PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.600e-22
Identity = 52/117 (44.44%), Postives = 79/117 (67.52%), Query Frame = -3
Query:  202 DLGSARIVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVD-AGFVPNDLQVGQTGKIVAPELYMAFGVSGAIQHLAGMRDSKVIVAVNKDADAPIFQVADYGLVGDLFEVIPEL 549
            DL  AR+VV+ GRG+ S EN  + E+L + +GA +  +R V +   ++ ++  VG +  ++ PELY+A G+SG IQH+ G   S+ I A+NKD +APIFQ ADYG+VGD  +++P L
Sbjct:  191 DLDKARLVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWMEHERYVGISNLMLKPELYLAVGISGQIQHMVGANASQTIFAINKDKNAPIFQYADYGIVGDAVKILPAL 307          
BLAST of CV998091 vs. ExPASy Swiss-Prot
Match: FIXB_SHIDS (Protein fixB OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=fixB PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.600e-22
Identity = 52/117 (44.44%), Postives = 79/117 (67.52%), Query Frame = -3
Query:  202 DLGSARIVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVD-AGFVPNDLQVGQTGKIVAPELYMAFGVSGAIQHLAGMRDSKVIVAVNKDADAPIFQVADYGLVGDLFEVIPEL 549
            DL  AR+VV+ GRG+ S EN  + E+L + +GA +  +R V +   ++ ++  VG +  ++ PELY+A G+SG IQH+ G   S+ I A+NKD +APIFQ ADYG+VGD  +++P L
Sbjct:  191 DLDKARLVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWMEHERYVGISNLMLKPELYLAVGISGQIQHMVGANASQTIFAINKDKNAPIFQYADYGIVGDAVKILPAL 307          
BLAST of CV998091 vs. ExPASy Swiss-Prot
Match: FIXB_ECOUT (Protein fixB OS=Escherichia coli (strain UTI89 / UPEC) GN=fixB PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.600e-22
Identity = 52/117 (44.44%), Postives = 79/117 (67.52%), Query Frame = -3
Query:  202 DLGSARIVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVD-AGFVPNDLQVGQTGKIVAPELYMAFGVSGAIQHLAGMRDSKVIVAVNKDADAPIFQVADYGLVGDLFEVIPEL 549
            DL  AR+VV+ GRG+ S EN  + E+L + +GA +  +R V +   ++ ++  VG +  ++ PELY+A G+SG IQH+ G   S+ I A+NKD +APIFQ ADYG+VGD  +++P L
Sbjct:  191 DLDKARLVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWMEHERYVGISNLMLKPELYLAVGISGQIQHMVGANASQTIFAINKDKNAPIFQYADYGIVGDAVKILPAL 307          
BLAST of CV998091 vs. ExPASy Swiss-Prot
Match: FIXB_ECOSM (Protein fixB OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=fixB PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.600e-22
Identity = 52/117 (44.44%), Postives = 79/117 (67.52%), Query Frame = -3
Query:  202 DLGSARIVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVD-AGFVPNDLQVGQTGKIVAPELYMAFGVSGAIQHLAGMRDSKVIVAVNKDADAPIFQVADYGLVGDLFEVIPEL 549
            DL  AR+VV+ GRG+ S EN  + E+L + +GA +  +R V +   ++ ++  VG +  ++ PELY+A G+SG IQH+ G   S+ I A+NKD +APIFQ ADYG+VGD  +++P L
Sbjct:  191 DLDKARLVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWMEHERYVGISNLMLKPELYLAVGISGQIQHMVGANASQTIFAINKDKNAPIFQYADYGIVGDAVKILPAL 307          
The following BLAST results are available for this feature:
BLAST of CV998091 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
FIXB_RHISN1.116e-3133.72Protein fixB OS=Rhizobium sp. (strain NGR234) GN=f... [more]
YDIR_ECOLI3.256e-2342.74Putative electron transfer flavoprotein subunit yd... [more]
ETFA_METME9.473e-2335.56Electron transfer flavoprotein subunit alpha OS=Me... [more]
FIXB_ESCF31.616e-2243.80Protein fixB OS=Escherichia fergusonii (strain ATC... [more]
FIXB_ECO242.110e-2244.07Protein fixB OS=Escherichia coli O139:H28 (strain ... [more]
FIXB_SHISS3.600e-2244.44Protein fixB OS=Shigella sonnei (strain Ss046) GN=... [more]
FIXB_SHIFL3.600e-2244.44Protein fixB OS=Shigella flexneri GN=fixB PE=3 SV=... [more]
FIXB_SHIDS3.600e-2244.44Protein fixB OS=Shigella dysenteriae serotype 1 (s... [more]
FIXB_ECOUT3.600e-2244.44Protein fixB OS=Escherichia coli (strain UTI89 / U... [more]
FIXB_ECOSM3.600e-2244.44Protein fixB OS=Escherichia coli (strain SMS-3-5 /... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_D-6_T7 Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07-153 Citrus sinensis cDNA clone TC48_H06_034, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV998091 ID=CV998091; Name=CV998091; organism=Citrus sinensis; type=EST; length=968bp
TTTTTTTTTTTTTTTTTACTTATAACTTTTTTATCTCACCCGAAATTATT
TATAAAAAAAAAATCAGCAATGTATTATTTCTTTTATCACTTATTTTTTA
GCAATTGGACCTGGAATTTGAGCGCGCACACATCTATTTTTTCTCCGGGA
CCTGGAATTTGAGCGCGCACACATCTATTTTTTCTCCGGGAACTTTTCTA
GCAACTCTGGAATCACTTCAAAAAGATCGCCAACGAGTCCGTAGTCAGCT
ACCTGGAAAATTGGTGCATCTGCATCCTTATTTACAGCAACAATGACCTT
AGAATCTCTCATGCCAGCTAAATGTTGAATGGCTCCTGAAACACCAAAAG
CCATATACAATTCTGGAGCAACAATTTTCCCGGTTTGACCGACCTGTAGA
TCATTAGGAACAAATCCAGCATCAACTACAGCACGAGTAGCCCCAACTGC
TGCCCCAAGTTTCTCCGCAAGCTTTTCTATCATTTTGAAGTTCTCAGCAC
TTTTCAAACCTCGTCCCCCAGTGACTACAATACGTGCACTTCCAAGATCA
GGGCGTTCTGCATCCTGAGATGTATGCTTTACATATCTAGATTTTCCAAT
AGAATCTTCATCTAAAGCTGAGAGATCAACCTGGGAAATAGAAGCCCCAT
TAGATCTTGATTCAGCTGAACTCTTGGGCATTGGGAAAGATGTGGCTCTG
ACGGTCAACATACAAGGGTTGGCACCAGTGTATCGAACTGTACACAGCGC
ATTTCCAGCATAAATTGGCCTGACGAATTGACTAGAACCAGAAATTTCAA
TAACATCAGTAATTGGAGAAACATCCAATAGTGCAGCTGCACGAGGAAGT
ACGTTTTTGCCGAATGAACCTGAAGCAGAAATTATGTGCGAGTATTTTTC
TCTCTGCTGAATCATATGGACTAGTTTAGCCCAAGGTTCAGCAATAGGAT
ATGCAAATTTATCTGAAT
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