CV998091

Overview
NameCV998091
Unique NameCV998091
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length968
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV998091 vs. ExPASy Swiss-Prot
Match: FIXB_ECOSE (Protein fixB OS=Escherichia coli (strain SE11) GN=fixB PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.600e-22
Identity = 52/117 (44.44%), Postives = 79/117 (67.52%), Query Frame = -3 
Query:  202 DLGSARIVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVD-AGFVPNDLQVGQTGKIVAPELYMAFGVSGAIQHLAGMRDSKVIVAVNKDADAPIFQVADYGLVGDLFEVIPEL 549
            DL  AR+VV+ GRG+ S EN  + E+L + +GA +  +R V +   ++ ++  VG +  ++ PELY+A G+SG IQH+ G   S+ I A+NKD +APIFQ ADYG+VGD  +++P L
Sbjct:  191 DLDKARLVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWMEHERYVGISNLMLKPELYLAVGISGQIQHMVGANASQTIFAINKDKNAPIFQYADYGIVGDAVKILPAL 307
[Close]
BLAST of CV998091 vs. ExPASy Swiss-Prot
Match: FIXB_ECOLI (Protein fixB OS=Escherichia coli (strain K12) GN=fixB PE=3 SV=3)

HSP 1 Score: 105.916 bits (263), Expect = 3.600e-22
Identity = 52/117 (44.44%), Postives = 79/117 (67.52%), Query Frame = -3 
Query:  202 DLGSARIVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVD-AGFVPNDLQVGQTGKIVAPELYMAFGVSGAIQHLAGMRDSKVIVAVNKDADAPIFQVADYGLVGDLFEVIPEL 549
            DL  AR+VV+ GRG+ S EN  + E+L + +GA +  +R V +   ++ ++  VG +  ++ PELY+A G+SG IQH+ G   S+ I A+NKD +APIFQ ADYG+VGD  +++P L
Sbjct:  191 DLDKARLVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWMEHERYVGISNLMLKPELYLAVGISGQIQHMVGANASQTIFAINKDKNAPIFQYADYGIVGDAVKILPAL 307
[Close]
BLAST of CV998091 vs. ExPASy Swiss-Prot
Match: FIXB_ECOLC (Protein fixB OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=fixB PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.600e-22
Identity = 52/117 (44.44%), Postives = 79/117 (67.52%), Query Frame = -3 
Query:  202 DLGSARIVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVD-AGFVPNDLQVGQTGKIVAPELYMAFGVSGAIQHLAGMRDSKVIVAVNKDADAPIFQVADYGLVGDLFEVIPEL 549
            DL  AR+VV+ GRG+ S EN  + E+L + +GA +  +R V +   ++ ++  VG +  ++ PELY+A G+SG IQH+ G   S+ I A+NKD +APIFQ ADYG+VGD  +++P L
Sbjct:  191 DLDKARLVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWMEHERYVGISNLMLKPELYLAVGISGQIQHMVGANASQTIFAINKDKNAPIFQYADYGIVGDAVKILPAL 307
[Close]
BLAST of CV998091 vs. ExPASy Swiss-Prot
Match: FIXB_ECOL6 (Protein fixB OS=Escherichia coli O6 GN=fixB PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.600e-22
Identity = 52/117 (44.44%), Postives = 79/117 (67.52%), Query Frame = -3 
Query:  202 DLGSARIVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVD-AGFVPNDLQVGQTGKIVAPELYMAFGVSGAIQHLAGMRDSKVIVAVNKDADAPIFQVADYGLVGDLFEVIPEL 549
            DL  AR+VV+ GRG+ S EN  + E+L + +GA +  +R V +   ++ ++  VG +  ++ PELY+A G+SG IQH+ G   S+ I A+NKD +APIFQ ADYG+VGD  +++P L
Sbjct:  191 DLDKARLVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWMEHERYVGISNLMLKPELYLAVGISGQIQHMVGANASQTIFAINKDKNAPIFQFADYGIVGDAVKILPAL 307
[Close]
BLAST of CV998091 vs. ExPASy Swiss-Prot
Match: FIXB_ECOL5 (Protein fixB OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=fixB PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.600e-22
Identity = 52/117 (44.44%), Postives = 79/117 (67.52%), Query Frame = -3 
Query:  202 DLGSARIVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVD-AGFVPNDLQVGQTGKIVAPELYMAFGVSGAIQHLAGMRDSKVIVAVNKDADAPIFQVADYGLVGDLFEVIPEL 549
            DL  AR+VV+ GRG+ S EN  + E+L + +GA +  +R V +   ++ ++  VG +  ++ PELY+A G+SG IQH+ G   S+ I A+NKD +APIFQ ADYG+VGD  +++P L
Sbjct:  191 DLDKARLVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWMEHERYVGISNLMLKPELYLAVGISGQIQHMVGANASQTIFAINKDKNAPIFQYADYGIVGDAVKILPAL 307
[Close]
BLAST of CV998091 vs. ExPASy Swiss-Prot
Match: FIXB_ECOK1 (Protein fixB OS=Escherichia coli O1:K1 / APEC GN=fixB PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.600e-22
Identity = 52/117 (44.44%), Postives = 79/117 (67.52%), Query Frame = -3 
Query:  202 DLGSARIVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVD-AGFVPNDLQVGQTGKIVAPELYMAFGVSGAIQHLAGMRDSKVIVAVNKDADAPIFQVADYGLVGDLFEVIPEL 549
            DL  AR+VV+ GRG+ S EN  + E+L + +GA +  +R V +   ++ ++  VG +  ++ PELY+A G+SG IQH+ G   S+ I A+NKD +APIFQ ADYG+VGD  +++P L
Sbjct:  191 DLDKARLVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWMEHERYVGISNLMLKPELYLAVGISGQIQHMVGANASQTIFAINKDKNAPIFQYADYGIVGDAVKILPAL 307
[Close]
BLAST of CV998091 vs. ExPASy Swiss-Prot
Match: FIXB_ECOHS (Protein fixB OS=Escherichia coli O9:H4 (strain HS) GN=fixB PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.600e-22
Identity = 52/117 (44.44%), Postives = 79/117 (67.52%), Query Frame = -3 
Query:  202 DLGSARIVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVD-AGFVPNDLQVGQTGKIVAPELYMAFGVSGAIQHLAGMRDSKVIVAVNKDADAPIFQVADYGLVGDLFEVIPEL 549
            DL  AR+VV+ GRG+ S EN  + E+L + +GA +  +R V +   ++ ++  VG +  ++ PELY+A G+SG IQH+ G   S+ I A+NKD +APIFQ ADYG+VGD  +++P L
Sbjct:  191 DLDKARLVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWMEHERYVGISNLMLKPELYLAVGISGQIQHMVGANASQTIFAINKDKNAPIFQYADYGIVGDAVKILPAL 307
[Close]
BLAST of CV998091 vs. ExPASy Swiss-Prot
Match: FIXB_ECODH (Protein fixB OS=Escherichia coli (strain K12 / DH10B) GN=fixB PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.600e-22
Identity = 52/117 (44.44%), Postives = 79/117 (67.52%), Query Frame = -3 
Query:  202 DLGSARIVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVD-AGFVPNDLQVGQTGKIVAPELYMAFGVSGAIQHLAGMRDSKVIVAVNKDADAPIFQVADYGLVGDLFEVIPEL 549
            DL  AR+VV+ GRG+ S EN  + E+L + +GA +  +R V +   ++ ++  VG +  ++ PELY+A G+SG IQH+ G   S+ I A+NKD +APIFQ ADYG+VGD  +++P L
Sbjct:  191 DLDKARLVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWMEHERYVGISNLMLKPELYLAVGISGQIQHMVGANASQTIFAINKDKNAPIFQYADYGIVGDAVKILPAL 307
[Close]
BLAST of CV998091 vs. ExPASy Swiss-Prot
Match: FIXB_ECOBW (Protein fixB OS=Escherichia coli (strain K12 / BW2952) GN=fixB PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.600e-22
Identity = 52/117 (44.44%), Postives = 79/117 (67.52%), Query Frame = -3 
Query:  202 DLGSARIVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVD-AGFVPNDLQVGQTGKIVAPELYMAFGVSGAIQHLAGMRDSKVIVAVNKDADAPIFQVADYGLVGDLFEVIPEL 549
            DL  AR+VV+ GRG+ S EN  + E+L + +GA +  +R V +   ++ ++  VG +  ++ PELY+A G+SG IQH+ G   S+ I A+NKD +APIFQ ADYG+VGD  +++P L
Sbjct:  191 DLDKARLVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWMEHERYVGISNLMLKPELYLAVGISGQIQHMVGANASQTIFAINKDKNAPIFQYADYGIVGDAVKILPAL 307
[Close]
BLAST of CV998091 vs. ExPASy Swiss-Prot
Match: FIXB_ECO8A (Protein fixB OS=Escherichia coli O8 (strain IAI1) GN=fixB PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.600e-22
Identity = 52/117 (44.44%), Postives = 79/117 (67.52%), Query Frame = -3 
Query:  202 DLGSARIVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVD-AGFVPNDLQVGQTGKIVAPELYMAFGVSGAIQHLAGMRDSKVIVAVNKDADAPIFQVADYGLVGDLFEVIPEL 549
            DL  AR+VV+ GRG+ S EN  + E+L + +GA +  +R V +   ++ ++  VG +  ++ PELY+A G+SG IQH+ G   S+ I A+NKD +APIFQ ADYG+VGD  +++P L
Sbjct:  191 DLDKARLVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWMEHERYVGISNLMLKPELYLAVGISGQIQHMVGANASQTIFAINKDKNAPIFQYADYGIVGDAVKILPAL 307
The following BLAST results are available for this feature:
BLAST of CV998091 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
FIXB_ECOSE3.600e-2244.44Protein fixB OS=Escherichia coli (strain SE11) GN=... [more]
FIXB_ECOLI3.600e-2244.44Protein fixB OS=Escherichia coli (strain K12) GN=f... [more]
FIXB_ECOLC3.600e-2244.44Protein fixB OS=Escherichia coli (strain ATCC 8739... [more]
FIXB_ECOL63.600e-2244.44Protein fixB OS=Escherichia coli O6 GN=fixB PE=3 S... [more]
FIXB_ECOL53.600e-2244.44Protein fixB OS=Escherichia coli O6:K15:H31 (strai... [more]
FIXB_ECOK13.600e-2244.44Protein fixB OS=Escherichia coli O1:K1 / APEC GN=f... [more]
FIXB_ECOHS3.600e-2244.44Protein fixB OS=Escherichia coli O9:H4 (strain HS)... [more]
FIXB_ECODH3.600e-2244.44Protein fixB OS=Escherichia coli (strain K12 / DH1... [more]
FIXB_ECOBW3.600e-2244.44Protein fixB OS=Escherichia coli (strain K12 / BW2... [more]
FIXB_ECO8A3.600e-2244.44Protein fixB OS=Escherichia coli O8 (strain IAI1) ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_D-6_T7 Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07-153 Citrus sinensis cDNA clone TC48_H06_034, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV998091 ID=CV998091; Name=CV998091; organism=Citrus sinensis; type=EST; length=968bp
TTTTTTTTTTTTTTTTTACTTATAACTTTTTTATCTCACCCGAAATTATT
TATAAAAAAAAAATCAGCAATGTATTATTTCTTTTATCACTTATTTTTTA
GCAATTGGACCTGGAATTTGAGCGCGCACACATCTATTTTTTCTCCGGGA
CCTGGAATTTGAGCGCGCACACATCTATTTTTTCTCCGGGAACTTTTCTA
GCAACTCTGGAATCACTTCAAAAAGATCGCCAACGAGTCCGTAGTCAGCT
ACCTGGAAAATTGGTGCATCTGCATCCTTATTTACAGCAACAATGACCTT
AGAATCTCTCATGCCAGCTAAATGTTGAATGGCTCCTGAAACACCAAAAG
CCATATACAATTCTGGAGCAACAATTTTCCCGGTTTGACCGACCTGTAGA
TCATTAGGAACAAATCCAGCATCAACTACAGCACGAGTAGCCCCAACTGC
TGCCCCAAGTTTCTCCGCAAGCTTTTCTATCATTTTGAAGTTCTCAGCAC
TTTTCAAACCTCGTCCCCCAGTGACTACAATACGTGCACTTCCAAGATCA
GGGCGTTCTGCATCCTGAGATGTATGCTTTACATATCTAGATTTTCCAAT
AGAATCTTCATCTAAAGCTGAGAGATCAACCTGGGAAATAGAAGCCCCAT
TAGATCTTGATTCAGCTGAACTCTTGGGCATTGGGAAAGATGTGGCTCTG
ACGGTCAACATACAAGGGTTGGCACCAGTGTATCGAACTGTACACAGCGC
ATTTCCAGCATAAATTGGCCTGACGAATTGACTAGAACCAGAAATTTCAA
TAACATCAGTAATTGGAGAAACATCCAATAGTGCAGCTGCACGAGGAAGT
ACGTTTTTGCCGAATGAACCTGAAGCAGAAATTATGTGCGAGTATTTTTC
TCTCTGCTGAATCATATGGACTAGTTTAGCCCAAGGTTCAGCAATAGGAT
ATGCAAATTTATCTGAAT
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