CV998091

Overview
NameCV998091
Unique NameCV998091
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length968
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV998091 vs. ExPASy Swiss-Prot
Match: FIXB_SALPA (Protein fixB OS=Salmonella paratyphi A GN=fixB PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 8.019e-22
Identity = 76/251 (30.28%), Postives = 127/251 (50.60%), Query Frame = -3
Query:  202 AKLVHMIQQREKYSHIISASGSFGKNVLPRAAALLDVSPITDVIEIS---GSSQFVRPIYAGNALCTVRYTGANP-CMLTVRATSFPMPKSSAESRSNGASISQVDLSALDEDSIGKSRYVKHTSQDAERP---DLGSARIVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVD-AGFVPNDLQVGQTGKIVAPELYMAFGVSGAIQHLAGMRDSKVIVAVNKDADAPIFQVADYGLVGDLFEVIPEL 930
            A +   I+Q  +   ++  +   GK +  +    L  +   D  ++S   G +     +Y G A+     T A+P  ++T+ + +F   +  A SRS      Q    A           V  T+  A +    DL  AR+VV+ GRG+ S EN  + E L + +GA +  +R V +   ++ ++  VG +  ++ PELY+A G+SG IQH+ G   ++ I A+NKD +APIFQ AD+G+VGD  +++P L
Sbjct:   69 AAMAETIRQHSEGGAVLLPNTRRGKLLAAKLGYRLSAAVSNDASDVSLQDGKAAVKHMVYGGLAIGAE--TIASPFAVITLSSGTFDAQQPDA-SRSGEMHTVQWQAPATA---------VTRTATQARQSNSVDLDKARLVVSVGRGIGSKENISLAEALCQTIGAELACSRPVAENEKWMEHERYVGISNLMLKPELYLAVGISGQIQHMVGANGAQTIFAINKDKNAPIFQYADFGIVGDALKILPAL 307          
BLAST of CV998091 vs. ExPASy Swiss-Prot
Match: FIXB_SALA4 (Protein fixB OS=Salmonella agona (strain SL483) GN=fixB PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 8.019e-22
Identity = 76/251 (30.28%), Postives = 127/251 (50.60%), Query Frame = -3
Query:  202 AKLVHMIQQREKYSHIISASGSFGKNVLPRAAALLDVSPITDVIEIS---GSSQFVRPIYAGNALCTVRYTGANP-CMLTVRATSFPMPKSSAESRSNGASISQVDLSALDEDSIGKSRYVKHTSQDAERP---DLGSARIVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVD-AGFVPNDLQVGQTGKIVAPELYMAFGVSGAIQHLAGMRDSKVIVAVNKDADAPIFQVADYGLVGDLFEVIPEL 930
            A +   I+Q  +   ++  +   GK +  +    L  +   D  ++S   G +     +Y G A+     T A+P  ++T+ + +F   +  A SRS      Q    A           V  T+  A +    DL  AR+VV+ GRG+ S EN  + E L + +GA +  +R V +   ++ ++  VG +  ++ PELY+A G+SG IQH+ G   ++ I A+NKD +APIFQ AD+G+VGD  +++P L
Sbjct:   69 AAMAETIRQHSEGGAVLLPNTRRGKLLAAKLGYRLSAAVSNDASDVSLQDGKAAVKHMVYGGLAIGAE--TIASPFAVITLSSGTFDAQQPDA-SRSGEMHTVQWQAPATA---------VTRTATQARQSNSVDLDKARLVVSVGRGIGSKENISLAEALCQTIGAELACSRPVAENEKWMEHERYVGISNLMLKPELYLAVGISGQIQHMVGANGAQTIFAINKDKNAPIFQYADFGIVGDALKILPAL 307          
BLAST of CV998091 vs. ExPASy Swiss-Prot
Match: FIXB_ECOLU (Protein fixB OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=fixB PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 8.019e-22
Identity = 51/117 (43.59%), Postives = 79/117 (67.52%), Query Frame = -3
Query:  202 DLGSARIVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVD-AGFVPNDLQVGQTGKIVAPELYMAFGVSGAIQHLAGMRDSKVIVAVNKDADAPIFQVADYGLVGDLFEVIPEL 549
            DL  AR+VV+ GRG+ S +N  + E+L + +GA +  +R V +   ++ ++  VG +  ++ PELY+A G+SG IQH+ G   S+ I A+NKD +APIFQ ADYG+VGD  +++P L
Sbjct:  191 DLDKARLVVSVGRGIGSKDNIALAEQLCKAIGAELACSRPVAENEKWMEHERYVGISNLMLKPELYLAVGISGQIQHMVGANASQTIFAINKDKNAPIFQYADYGIVGDAVKILPAL 307          
BLAST of CV998091 vs. ExPASy Swiss-Prot
Match: YGCQ_ECOLI (Putative electron transfer flavoprotein subunit ygcQ OS=Escherichia coli (strain K12) GN=ygcQ PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 2.414e-18
Identity = 78/238 (32.77%), Postives = 126/238 (52.94%), Query Frame = -3
Query:  199 QREKYSHIISASGSFGKNVLPRAAALLDVSPITDVIEISGSSQFVRPIYAGNALCTVRYTGANPCMLTVRATSFPMPKSSAESRSNGASISQVDL--SALDEDSIGKSRYVKHTSQDAERPDLGSARIVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPNDLQVGQTGKIVAPELYMAFGVSGAIQHLAGMRDSKVIVAVNKDADAPIFQVADYGLVGDLFEVIPELL 906
            QR     ++   G+FG  +  R A  L  + I  V  +   +  VR  + GNAL     T   P  L++   +      +A++ +  + + Q+++   AL  D +  +  +K+ ++D     L  AR V+  G+G   A+N + I  LAEKLGA VG +RA V  G V  +  +G +G ++APE+ +  G SGA   +AG+R+SK +VA+N DA A +F  AD G+V D ++V+ E L
Sbjct:   53 QRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKSHWGNALTATLQTEKRPLCLSLARQA-----GAAKNATLPSGMQQLNIVPGALP-DWLVSTEDLKNVTRDP----LAEARRVLVVGQG-GEADN-QEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAGVRNSKFVVAINHDASAAVFSQADVGVVDD-WKVVLEAL 277          
The following BLAST results are available for this feature:
BLAST of CV998091 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
FIXB_SALPA8.019e-2230.28Protein fixB OS=Salmonella paratyphi A GN=fixB PE=... [more]
FIXB_SALA48.019e-2230.28Protein fixB OS=Salmonella agona (strain SL483) GN... [more]
FIXB_ECOLU8.019e-2243.59Protein fixB OS=Escherichia coli O17:K52:H18 (stra... [more]
YGCQ_ECOLI2.414e-1832.77Putative electron transfer flavoprotein subunit yg... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_D-6_T7 Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07-153 Citrus sinensis cDNA clone TC48_H06_034, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV998091 ID=CV998091; Name=CV998091; organism=Citrus sinensis; type=EST; length=968bp
TTTTTTTTTTTTTTTTTACTTATAACTTTTTTATCTCACCCGAAATTATT
TATAAAAAAAAAATCAGCAATGTATTATTTCTTTTATCACTTATTTTTTA
GCAATTGGACCTGGAATTTGAGCGCGCACACATCTATTTTTTCTCCGGGA
CCTGGAATTTGAGCGCGCACACATCTATTTTTTCTCCGGGAACTTTTCTA
GCAACTCTGGAATCACTTCAAAAAGATCGCCAACGAGTCCGTAGTCAGCT
ACCTGGAAAATTGGTGCATCTGCATCCTTATTTACAGCAACAATGACCTT
AGAATCTCTCATGCCAGCTAAATGTTGAATGGCTCCTGAAACACCAAAAG
CCATATACAATTCTGGAGCAACAATTTTCCCGGTTTGACCGACCTGTAGA
TCATTAGGAACAAATCCAGCATCAACTACAGCACGAGTAGCCCCAACTGC
TGCCCCAAGTTTCTCCGCAAGCTTTTCTATCATTTTGAAGTTCTCAGCAC
TTTTCAAACCTCGTCCCCCAGTGACTACAATACGTGCACTTCCAAGATCA
GGGCGTTCTGCATCCTGAGATGTATGCTTTACATATCTAGATTTTCCAAT
AGAATCTTCATCTAAAGCTGAGAGATCAACCTGGGAAATAGAAGCCCCAT
TAGATCTTGATTCAGCTGAACTCTTGGGCATTGGGAAAGATGTGGCTCTG
ACGGTCAACATACAAGGGTTGGCACCAGTGTATCGAACTGTACACAGCGC
ATTTCCAGCATAAATTGGCCTGACGAATTGACTAGAACCAGAAATTTCAA
TAACATCAGTAATTGGAGAAACATCCAATAGTGCAGCTGCACGAGGAAGT
ACGTTTTTGCCGAATGAACCTGAAGCAGAAATTATGTGCGAGTATTTTTC
TCTCTGCTGAATCATATGGACTAGTTTAGCCCAAGGTTCAGCAATAGGAT
ATGCAAATTTATCTGAAT
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