CV998089

Overview
NameCV998089
Unique NameCV998089
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length822
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV998089 vs. ExPASy Swiss-Prot
Match: PPIB_CHICK (Peptidyl-prolyl cis-trans isomerase B OS=Gallus gallus GN=PPIB PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.848e-12
Identity = 49/145 (33.79%), Postives = 76/145 (52.41%), Query Frame = 3
Query:   72 GYIIVELFKDGSPETVDKFIDLC--QKGY-FKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSP-KHEAFMIGTVK----SKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGI 482
            G +++ LF    P+TV+ F+ L   +KG+ FKG  FH VIK+++IQ G   D    D    +     +      K + +  G V      KD+ G + +ITT     L+ K +VFG+V++G DVV+++E   TD   +P  DV I
Sbjct:   49 GRVVIGLFGKTVPKTVENFVALATGEKGFGFKGSKFHRVIKDFMIQGG---DFTRGDGTGGKSIYGDRFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMDVVRKVENTKTDSRDKPLKDVTI 190          
BLAST of CV998089 vs. ExPASy Swiss-Prot
Match: CYPE_DICDI (Peptidyl-prolyl cis-trans isomerase cypE OS=Dictyostelium discoideum GN=cypE PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.848e-12
Identity = 44/148 (29.73%), Postives = 75/148 (50.68%), Query Frame = 3
Query:   57 LNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHEAFMIGTVKSK--DSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIINVT 494
            L T+ G I +EL+ + +P+    F +L ++GY+    FH +IK+++IQ G         E     K   ++    KH    I ++ +   +S G + +IT  P P L+ K  +FGRV  G  VVQ++  + T+   +P  ++ II  T
Sbjct:    8 LQTTVGDITLELYYNHAPKACKNFYELSKRGYYDNTIFHRLIKDFMIQGGDPLGNGRGGESIYGKKFEDEITKELKHTGAGILSMANSGVNSNGSQFFITFGPTPWLDGKHTIFGRVKSGMKVVQKMNAMQTNND-KPIDEIRIIKAT 154          
BLAST of CV998089 vs. ExPASy Swiss-Prot
Match: CYP4_CAEEL (Peptidyl-prolyl cis-trans isomerase 4 OS=Caenorhabditis elegans GN=cyn-4 PE=2 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 5.848e-12
Identity = 44/152 (28.95%), Postives = 77/152 (50.66%), Query Frame = 3
Query:   57 LNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHEAFMIGTVKSKDS--KGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIINVTLKHA 506
            L T+ G + +ELF    P+  + FI  C  GY+    FH +IKN+++Q G         E         +  +   H+A  + ++ +K S   G + +IT  P   L+ K  +FGR+V G+D +  IE+++T+E     +DV +++V +  A
Sbjct:  284 LVTNFGPLNLELFAPKVPKACENFITHCSNGYYNNTKFHRLIKNFMLQGGDPTGTGHGGESIWDKPFSDEFISGFSHDARGVLSMANKGSNTNGSQFFITFRPCKYLDRKHTIFGRLVGGQDTLTTIEKLETEE----GTDVPMVSVVIMRA 431          
BLAST of CV998089 vs. ExPASy Swiss-Prot
Match: PPIL3_DICDI (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Dictyostelium discoideum GN=ppil3 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.637e-12
Identity = 42/149 (28.19%), Postives = 75/149 (50.34%), Query Frame = 3
Query:   57 LNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHEAFMIGTVKSK--DSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIINVTL 497
            L+TS G I VE+F D  P   + F+ LC   Y+    FH  IK ++IQ G   +     E   + + + +  +  KH    I ++ +   D+ G + +IT      LN    VFG+++ G +V+  +E+V  D+   P +++ + +VT+
Sbjct:    5 LHTSLGDIKVEIFCDSVPLASENFLALCASNYYNNTIFHRNIKGFMIQGGDPTNTGRGGESIWKKQFKDEFPSHLKHNTRGILSMANSGPDTNGSQFFITYGKHRSLNKVYTVFGKIIAGIEVLDLMEKVPVDDKDLPLNEIILKSVTI 153          
BLAST of CV998089 vs. ExPASy Swiss-Prot
Match: PPID_RHIOR (Peptidyl-prolyl cis-trans isomerase D OS=Rhizopus oryzae GN=cyp12 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.637e-12
Identity = 47/141 (33.33%), Postives = 74/141 (52.48%), Query Frame = 3
Query:   60 NTSKGYIIVELFKDGSPETVDKFIDLC--QKGY--------FKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHEA-FMIGTVKS-KDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDT 446
            N  +G I+ ELFKD  P+T + F  LC  +KG         ++G  FH +IKN++IQ G           +  G+         KHE  F++    +   + G + +ITT P P L+ K +VFG+V+KG+ VV+ +E ++T
Sbjct:   14 NKPEGRIVFELFKDIVPKTAENFRALCTGEKGEGKSGKPLSYQGSLFHRIIKNFMIQGGDFTAGNGTGGESIYGEKFEDENFVLKHEKPFLLSMANAGPGTNGSQFFITTVPTPHLDGKHVVFGKVLKGKAVVRALENLET 154          
BLAST of CV998089 vs. ExPASy Swiss-Prot
Match: CYP11_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp11 OS=Rhizopus oryzae GN=cyp11 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.637e-12
Identity = 47/152 (30.92%), Postives = 77/152 (50.66%), Query Frame = 3
Query:   72 GYIIVELFKDGSPETVDKFIDLC--QKG---------YFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHEAFMIGTVKSK--DSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIIN 488
            G I++ELF D  P+T + F  LC  +KG         ++KG  FH +IK ++ Q G           +  G        S KH+   + ++ ++  +++  + +ITT P P L+ K +VFGRVV G +VV+ +E    D+  +P  +V I N
Sbjct:   18 GRIVIELFADQVPKTAENFRALCTGEKGIGKVSNMPLHYKGSIFHRIIKGFMCQGGDFTHRTGKGGESIYGANFPDESFSRKHDTHGLLSMANRGPNTQTSQFFITTRPTPHLDGKHVVFGRVVSGYNVVEMMENEPVDDQDRPLHNVMIAN 169          
BLAST of CV998089 vs. ExPASy Swiss-Prot
Match: PPIL3_CRYNE (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Cryptococcus neoformans GN=CYP10 PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 9.974e-12
Identity = 42/151 (27.81%), Postives = 74/151 (49.01%), Query Frame = 3
Query:   57 LNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFKGMSFHHVIKNYVIQAGHSKDLAAADE--W--TSRGKIRSQLRTSPKHEAFMIGTVKSKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIINVTL 497
            L+T+ G I +ELF +  P T + F+ LC  G + G  FH  I+ ++IQ G         +  W      +IR  LR + +    M       D+   + +IT A  P L+ K  +FG+V+ G + +  +E+   +   +P  ++ ++NVT+
Sbjct:    5 LHTNLGDIKIELFCESVPRTAENFLALCASGQYDGTLFHRNIRGFMIQGGDPTGTGKGGQSIWGRPFSDEIRQTLRFNNRGMVAMANA--GPDTNKSQFFITYAKQPSLDGKYSIFGKVIDGMETLDSMEKTPVNPKSRPLQEIKLLNVTV 153          
BLAST of CV998089 vs. ExPASy Swiss-Prot
Match: CYP9_CAEBR (Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhabditis briggsae GN=cyn-9 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 9.974e-12
Identity = 44/152 (28.95%), Postives = 75/152 (49.34%), Query Frame = 3
Query:   72 GYIIVELFKDGSPETVDKFIDLCQ-----------KGYFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHEAFMIGTVKSK--DSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIIN 488
            G I ++LF   +P+T + F  LC            + ++KG   H V+K ++IQ G   D      ++  G+     +   KH    + ++ +K  +S   + +ITTAP P  N K +VFG V+KG +VV  ++ ++ D   +P + V I N
Sbjct:   20 GRIEIKLFTSEAPKTCENFRALCTGEVGMAPNNKARLHYKGNEIHRVVKKFMIQGGDITDGDGRGGFSIYGRYFDDEKFVLKHSKPYLLSMANKGPNSNSSQFFITTAPAPHCNGKHVVFGEVIKGREVVDVLDNLEVDGKSKPIAKVRIFN 171          
BLAST of CV998089 vs. ExPASy Swiss-Prot
Match: PPIL1_GIBZE (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Gibberella zeae GN=CYP1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.303e-11
Identity = 39/145 (26.90%), Postives = 71/145 (48.97%), Query Frame = 3
Query:   57 LNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHEAFMIGTVKS--KDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGII 485
            L T+ G +I+EL+   +P+T + F  L ++GY+    FH +I N+++Q G               K   ++    KH    I ++ +   ++ G + ++T AP P L+ K  +FGRV  G   ++ +  V T    +P  +V I+
Sbjct:    7 LETTMGSLILELYTTHAPKTCNNFTTLVRRGYYDNTIFHRIIPNFMVQGGDPTGTGRGGSSIFGEKFEDEIDPGLKHTGAGILSMANAGPNTNGSQFFVTLAPTPWLDGKHTIFGRVKSGMGTIKRMGLVKTGSEDRPVEEVKIV 151          
BLAST of CV998089 vs. ExPASy Swiss-Prot
Match: PPIC_HUMAN (Peptidyl-prolyl cis-trans isomerase C OS=Homo sapiens GN=PPIC PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.303e-11
Identity = 53/150 (35.33%), Postives = 77/150 (51.33%), Query Frame = 3
Query:   72 GYIIVELFKDGSPETVDKFIDLC--QKGY-FKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSP----KHEAFMIGTVK----SKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIIN 488
            G I++ LF    P+TV+ F+ L   +KGY +KG  FH VIK+++IQ G   D+   D     G +     T P    K + + IG V       D+ G + +IT      L+ K +VFG+V+ G  VV  IE   TD H +P ++  IIN
Sbjct:   52 GRIVIGLFGKVVPKTVENFVALATGEKGYGYKGSKFHRVIKDFMIQGG---DITTGD---GTGGVSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVIDGMTVVHSIELQATDGHDRPLTNCSIIN 195          
The following BLAST results are available for this feature:
BLAST of CV998089 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
PPIB_CHICK5.848e-1233.79Peptidyl-prolyl cis-trans isomerase B OS=Gallus ga... [more]
CYPE_DICDI5.848e-1229.73Peptidyl-prolyl cis-trans isomerase cypE OS=Dictyo... [more]
CYP4_CAEEL5.848e-1228.95Peptidyl-prolyl cis-trans isomerase 4 OS=Caenorhab... [more]
PPIL3_DICDI7.637e-1228.19Peptidyl-prolyl cis-trans isomerase-like 3 OS=Dict... [more]
PPID_RHIOR7.637e-1233.33Peptidyl-prolyl cis-trans isomerase D OS=Rhizopus ... [more]
CYP11_RHIOR7.637e-1230.92Peptidyl-prolyl cis-trans isomerase cyp11 OS=Rhizo... [more]
PPIL3_CRYNE9.974e-1227.81Peptidyl-prolyl cis-trans isomerase-like 3 OS=Cryp... [more]
CYP9_CAEBR9.974e-1228.95Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhab... [more]
PPIL1_GIBZE1.303e-1126.90Peptidyl-prolyl cis-trans isomerase-like 1 OS=Gibb... [more]
PPIC_HUMAN1.303e-1135.33Peptidyl-prolyl cis-trans isomerase C OS=Homo sapi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_D-5_T7 Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07-153 Citrus sinensis cDNA clone TC47_G06_036, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV998089 ID=CV998089; Name=CV998089; organism=Citrus sinensis; type=EST; length=822bp
GATCAAGGATGATGCCTATGCGGTTTCAAGAAGTTTGATCTTCCTGGCCA
TGCTGTTTAAATACATCTAAAGGTTATATAATAGTGGAACTCTTCAAAGA
TGGTTCACCAGAAACCGTGGATAAATTTATTGACTTGTGTCAAAAGGGGT
ACTTCAAAGGTATGTCTTTCCATCATGTGATCAAAAACTATGTCATTCAA
GCTGGGCATTCCAAGGATCTTGCAGCTGCTGATGAATGGACATCAAGAGG
GAAGATCCGCAGTCAGCTGAGGACCAGTCCGAAGCATGAGGCGTTTATGA
TTGGAACTGTAAAATCTAAAGACAGCAAAGGATTTGAGCTATACATTACA
ACTGCACCAATACCAGATTTAAATGATAAGCTTATTGTGTTTGGACGAGT
AGTGAAGGGTGAGGATGTGGTGCAGGAAATTGAAGAGGTGGATACAGATG
AGCACTATCAGCCTAAGTCAGATGTAGGGATCATCAATGTGACACTAAAG
CATGCAATATGAGGATGTATGCTAAGCTACCGAAAAGATTTTACACCTAG
CCAAGTTTCTTGTTGTGCTATTGATTTTCGTATTAATCTTGTATTGCTGC
TGCTAGAACGCTTGGTTCAGGTTTTCTTTCTTGTCTCTCCCCGTTTATTG
TACTGCAGGGAGAGAAGGGTTCAAAGAAATGTTGTTGCATTGTTCAAAAA
AGTAAAGGTTTGTACTTCTTAGTAGGCAAAATACACAATTTTGTCAATTT
CATATTGAAATTTTTCTTGTAAAATTTCATGAGAAAATGTTTTTAACTTA
TTGCGGCCTTTTAAAGGTGAAA
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