CV998089

Overview
NameCV998089
Unique NameCV998089
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length822
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV998089 vs. ExPASy Swiss-Prot
Match: PPIC_MOUSE (Peptidyl-prolyl cis-trans isomerase C OS=Mus musculus GN=Ppic PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.701e-11
Identity = 54/150 (36.00%), Postives = 78/150 (52.00%), Query Frame = 3
Query:   72 GYIIVELFKDGSPETVDKFIDLC--QKGY-FKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSP----KHEAFMIGTVK----SKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIIN 488
            G I++ LF +  P+TV+ F+ L   +KGY +KG  FH VIK+++IQ G   D  A D     G +     T P    K + + IG V       D+ G + +IT      L+ K +VFG+V+ G  VV  IE   TD H +P +D  I+N
Sbjct:   52 GRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFMIQGG---DFTARD---GTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVN 195          
BLAST of CV998089 vs. ExPASy Swiss-Prot
Match: PPIC_BOVIN (Peptidyl-prolyl cis-trans isomerase C OS=Bos taurus GN=PPIC PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.701e-11
Identity = 54/150 (36.00%), Postives = 76/150 (50.67%), Query Frame = 3
Query:   72 GYIIVELFKDGSPETVDKFIDLC--QKGY-FKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSP----KHEAFMIGTVK----SKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIIN 488
            G I++ LF    P+TV+ F+ L   +KGY +KG  FH VIK+++IQ G   D    D     G I     T P    K + + IG V       D+ G + +IT      L+ K +VFG+V+ G  VV  IE   TD H +P +D  I+N
Sbjct:   52 GRIVIGLFGKVVPKTVENFVALATGEKGYGYKGSKFHRVIKDFMIQGG---DFTRGD---GTGGISIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPFTDCSIVN 195          
BLAST of CV998089 vs. ExPASy Swiss-Prot
Match: PPIB_MOUSE (Peptidyl-prolyl cis-trans isomerase B OS=Mus musculus GN=Ppib PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.701e-11
Identity = 47/146 (32.19%), Postives = 75/146 (51.37%), Query Frame = 3
Query:   66 SKGYIIVELFKDGSPETVDKFIDLC--QKGY-FKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKH--EAFMIGTVKSKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIIN 488
            S G ++  LF    P+TVD F+ L   +KG+ +K   FH VIK+++IQ G           +  G+         KH    ++      KD+ G + +ITT     L+ K +VFG+V++G DVV+++E   TD   +P  DV I++
Sbjct:   56 SVGRVVFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKVESTKTDSRDKPLKDVIIVD 201          
BLAST of CV998089 vs. ExPASy Swiss-Prot
Match: PPIH_SCHPO (Peptidyl-prolyl cis-trans isomerase cyp3 OS=Schizosaccharomyces pombe GN=cyp3 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.222e-11
Identity = 51/155 (32.90%), Postives = 75/155 (48.39%), Query Frame = 3
Query:   72 GYIIVELFKDGSPETVDKFIDLC--------QKGY-FKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSP------KHE--AFMIGTVKSKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGII 485
            G I + LF    P+T + F   C        QK   +K  +FH +I+ ++IQ G   D  + D   S     S  RT P      KH+    +      KDS G + +ITT P   L+ K +VFG V++G D+V+EIE      + +PKS+V I+
Sbjct:   19 GRIKIRLFSSIVPKTAENFRQFCTGETLGVNQKPIGYKNSTFHRIIQGFMIQGG---DFVSGDGTGSATIFNS--RTFPDENFTLKHDRPGLLSMANAGKDSNGCQFFITTVPCDFLDGKHVVFGEVIEGYDIVKEIESTPVGANSRPKSNVAIV 168          
BLAST of CV998089 vs. ExPASy Swiss-Prot
Match: PPID_KLULA (Peptidyl-prolyl cis-trans isomerase D OS=Kluyveromyces lactis GN=CPR6 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.902e-11
Identity = 45/151 (29.80%), Postives = 77/151 (50.99%), Query Frame = 3
Query:   72 GYIIVELFKDGSPETVDKFIDLCQ--KGY----------FKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHEA-FMIGTVKS-KDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGI 482
            G I+ EL+ D  P+T + F+ LC+   G+          +KG  FH VIK+++ Q G   +       +  G+       + KH+  F++    +  ++ G + +IT  P P L+ K +VFG V++G+ +V+ IE   TDE  +P  +V I
Sbjct:   20 GRIVFELYSDVVPKTAENFLKLCEGNSGFAKSKPDIPLSYKGSIFHRVIKSFMCQFGDFTNFNGTGGESIYGEKFEDENFTLKHDKPFLLSMANAGANTNGSQCFITCVPTPHLDGKHVVFGEVIQGKRLVRTIENNATDEADKPAKEVKI 170          
BLAST of CV998089 vs. ExPASy Swiss-Prot
Match: PPID_CANGA (Peptidyl-prolyl cis-trans isomerase D OS=Candida glabrata GN=CPR6 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.902e-11
Identity = 46/155 (29.68%), Postives = 79/155 (50.97%), Query Frame = 3
Query:   63 TSKGYIIVELFKDGSPETVDKFIDLCQKGY------------FKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHEA-FMIGTVKS-KDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHY-QPKSDVGI 482
            T KG I+ EL+KD  P+T + F+ LC+               +KG  FH VIK+++IQ G   +       +  G+         KH+  F++    +  ++ G + +IT  P P L+ K +VFG V++G+ +V+ IE+  T++   +P  DV +
Sbjct:   15 TPKGRIVFELYKDVVPKTAENFLKLCEGKSGMAKSKPDVPLSYKGSIFHRVIKDFMIQFGDFTNFDGTGGESIYGEKFEDENFEIKHDKPFLLSMANAGPNTNGSQAFITCVPTPHLDGKHVVFGEVIEGKRLVRLIEKQQTEDGTDKPMHDVKV 169          
BLAST of CV998089 vs. ExPASy Swiss-Prot
Match: PPIB_EMENI (Peptidyl-prolyl cis-trans isomerase B OS=Emericella nidulans GN=cpr2 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.902e-11
Identity = 49/152 (32.24%), Postives = 79/152 (51.97%), Query Frame = 3
Query:   66 SKGYIIVELFKDGSPETVDKFIDLC--QKGY-FKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHEAFMIGTVKS---------KDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGII 485
            S G I++ L+    PET + F  L   +KG+ ++G +FH VIK+++IQ G   D    D    +    ++     K E F +   K+         KD+ G + +ITTA  P L+ K +VFG V++G D+V +I+ V    + +P  DV I+
Sbjct:   46 SLGRIVLGLYGKTVPETAENFRALATGEKGFGYEGSNFHRVIKDFMIQGG---DFTRGDGTGGKSIYGAKF----KDENFKLRHTKTGLLSMANAGKDTNGSQFFITTAVTPWLDGKHVVFGEVLEGYDIVDKIQNVPKGRNDRPLKDVKIV 190          
BLAST of CV998089 vs. ExPASy Swiss-Prot
Match: CYP40_ARATH (Peptidyl-prolyl cis-trans isomerase CYP40 OS=Arabidopsis thaliana GN=CYP40 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.902e-11
Identity = 54/154 (35.06%), Postives = 76/154 (49.35%), Query Frame = 3
Query:   69 KGYIIVELFKDGSPETVDKFIDLC--QKG---------YFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSR---GKIRSQLRTSPKHEAF-MIGTVKS-KDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGI 482
            +G I++EL+ D  P+T + F  LC  +KG         ++KG  FH VIK ++IQ G   D++A D        G          KHE   M+    S  ++ G + +ITT     L+ K +VFGRV KG  VV+ IE V  +E   P  DV I
Sbjct:   17 EGRIVIELYDDVVPKTAENFRLLCTGEKGLGPNTGVPLHYKGNRFHRVIKGFMIQGG---DISANDGTGGESIYGLKFDDENFELKHERKGMLSMANSGPNTNGSQFFITTTRTSHLDGKHVVFGRVTKGMGVVRSIEHVSIEEQSCPSQDVVI 167          
BLAST of CV998089 vs. ExPASy Swiss-Prot
Match: PPIL2_GIBZE (Peptidyl-prolyl cis-trans isomerase-like 2 OS=Gibberella zeae GN=CYP8 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.790e-11
Identity = 42/151 (27.81%), Postives = 75/151 (49.67%), Query Frame = 3
Query:   57 LNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHEAFMIGTV----KSKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIINVTL 497
            + T+ G + +EL+ + +P+ V  FI L Q GY+KG++FH  I N++IQ G         +         +      H     GT+    K K++   + +    P P L+ K  VFG+VV+  +V+ ++E V TD   +P + + I ++ +
Sbjct:  327 METNMGDLTIELYPEFAPKAVWNFIKLSQTGYYKGVAFHRNIPNFMIQGGDPSGSGRGGQSVWGKYFDDEFDGPMTHNG--RGTLSMANKGKNTNSSQFFFAYKPTPHLDRKHTVFGKVVENINVLSKMENVPTDGSNRPLNKILIKDIVI 475          
BLAST of CV998089 vs. ExPASy Swiss-Prot
Match: PPIB_BOVIN (Peptidyl-prolyl cis-trans isomerase B OS=Bos taurus GN=PPIB PE=1 SV=4)

HSP 1 Score: 68.9366 bits (167), Expect = 3.790e-11
Identity = 46/142 (32.39%), Postives = 73/142 (51.41%), Query Frame = 3
Query:   72 GYIIVELFKDGSPETVDKFIDLC--QKGY-FKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKH--EAFMIGTVKSKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGI 482
            G +++ LF    P+TVD F+ L   +KG+ +K   FH VIK+++IQ G           +  G+         KH    ++      KD+ G + +ITT     L+ K +VFG+V++G DVV+++E   TD   +P  DV I
Sbjct:   58 GRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMDVVRKVESTKTDGRDKPLKDVTI 199          
The following BLAST results are available for this feature:
BLAST of CV998089 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
PPIC_MOUSE1.701e-1136.00Peptidyl-prolyl cis-trans isomerase C OS=Mus muscu... [more]
PPIC_BOVIN1.701e-1136.00Peptidyl-prolyl cis-trans isomerase C OS=Bos tauru... [more]
PPIB_MOUSE1.701e-1132.19Peptidyl-prolyl cis-trans isomerase B OS=Mus muscu... [more]
PPIH_SCHPO2.222e-1132.90Peptidyl-prolyl cis-trans isomerase cyp3 OS=Schizo... [more]
PPID_KLULA2.902e-1129.80Peptidyl-prolyl cis-trans isomerase D OS=Kluyverom... [more]
PPID_CANGA2.902e-1129.68Peptidyl-prolyl cis-trans isomerase D OS=Candida g... [more]
PPIB_EMENI2.902e-1132.24Peptidyl-prolyl cis-trans isomerase B OS=Emericell... [more]
CYP40_ARATH2.902e-1135.06Peptidyl-prolyl cis-trans isomerase CYP40 OS=Arabi... [more]
PPIL2_GIBZE3.790e-1127.81Peptidyl-prolyl cis-trans isomerase-like 2 OS=Gibb... [more]
PPIB_BOVIN3.790e-1132.39Peptidyl-prolyl cis-trans isomerase B OS=Bos tauru... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_D-5_T7 Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07-153 Citrus sinensis cDNA clone TC47_G06_036, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV998089 ID=CV998089; Name=CV998089; organism=Citrus sinensis; type=EST; length=822bp
GATCAAGGATGATGCCTATGCGGTTTCAAGAAGTTTGATCTTCCTGGCCA
TGCTGTTTAAATACATCTAAAGGTTATATAATAGTGGAACTCTTCAAAGA
TGGTTCACCAGAAACCGTGGATAAATTTATTGACTTGTGTCAAAAGGGGT
ACTTCAAAGGTATGTCTTTCCATCATGTGATCAAAAACTATGTCATTCAA
GCTGGGCATTCCAAGGATCTTGCAGCTGCTGATGAATGGACATCAAGAGG
GAAGATCCGCAGTCAGCTGAGGACCAGTCCGAAGCATGAGGCGTTTATGA
TTGGAACTGTAAAATCTAAAGACAGCAAAGGATTTGAGCTATACATTACA
ACTGCACCAATACCAGATTTAAATGATAAGCTTATTGTGTTTGGACGAGT
AGTGAAGGGTGAGGATGTGGTGCAGGAAATTGAAGAGGTGGATACAGATG
AGCACTATCAGCCTAAGTCAGATGTAGGGATCATCAATGTGACACTAAAG
CATGCAATATGAGGATGTATGCTAAGCTACCGAAAAGATTTTACACCTAG
CCAAGTTTCTTGTTGTGCTATTGATTTTCGTATTAATCTTGTATTGCTGC
TGCTAGAACGCTTGGTTCAGGTTTTCTTTCTTGTCTCTCCCCGTTTATTG
TACTGCAGGGAGAGAAGGGTTCAAAGAAATGTTGTTGCATTGTTCAAAAA
AGTAAAGGTTTGTACTTCTTAGTAGGCAAAATACACAATTTTGTCAATTT
CATATTGAAATTTTTCTTGTAAAATTTCATGAGAAAATGTTTTTAACTTA
TTGCGGCCTTTTAAAGGTGAAA
back to top