CV998089

Overview
NameCV998089
Unique NameCV998089
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length822
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV998089 vs. ExPASy Swiss-Prot
Match: PPIL3_GIBZE (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Gibberella zeae GN=CYP10 PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.950e-11
Identity = 46/156 (29.49%), Postives = 78/156 (50.00%), Query Frame = 3
Query:   57 LNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFKGMSFHHVIKNYVIQAG-----HSKDLAAADEWTSRGKIRSQLRTSPKHEAFMIGTVKSK--DSKGFELYITTAPIPDLNDKLIVFGRVV--KGEDVVQEIEEVDTDEHYQPKSDVGIINVTL 497
            L+TS G I VE++ +  P+T + F+ LC  GY+    FH VI  ++ Q G     +  +          G    ++R + +H A  + ++ +K   + G + +IT    P L+    VFGRV+  +G   + ++E V+ D   +PK  V I NVT+
Sbjct:    5 LHTSHGDIKVEIYCESVPKTAENFLALCGSGYYDKSPFHRVIPKFMAQTGAPATPNPPENPKGGRSIWGGAFEDEIRPALRHGARGVLSMANKGPGTNGSQFFITFDKAPHLDGLNTVFGRVIGDEGLATLAKMEAVEVDRKNRPKEPVRIENVTI 160          
BLAST of CV998089 vs. ExPASy Swiss-Prot
Match: PPID_MOUSE (40 kDa peptidyl-prolyl cis-trans isomerase OS=Mus musculus GN=Ppid PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 4.950e-11
Identity = 44/139 (31.65%), Postives = 69/139 (49.64%), Query Frame = 3
Query:   72 GYIIVELFKDGSPETVDKFIDLC--QKG---------YFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKH--EAFMIGTVKSKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTD 449
            G I++ELF D  P+T + F  LC  +KG         +FKG  FH +IK ++IQ G   +       +  G+         KH  E  +       ++ G + +ITT P P L+ K +VFG+V+KG  V + +E V+ +
Sbjct:   30 GRIVLELFADIVPKTAENFRALCTGEKGTGSTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGLGVARTLENVEVN 168          
BLAST of CV998089 vs. ExPASy Swiss-Prot
Match: PPID_HUMAN (40 kDa peptidyl-prolyl cis-trans isomerase OS=Homo sapiens GN=PPID PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 4.950e-11
Identity = 44/137 (32.12%), Postives = 69/137 (50.36%), Query Frame = 3
Query:   72 GYIIVELFKDGSPETVDKFIDLC--QKG---------YFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKH--EAFMIGTVKSKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVD 443
            G I++ELF D  P+T + F  LC  +KG         +FKG  FH +IK ++IQ G   +       +  G+         KH  E  +      +++ G + +ITT P P L+ K +VFG+V+KG  V + +E V+
Sbjct:   30 GRIVLELFADIVPKTAENFRALCTGEKGIGHTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGRNTNGSQFFITTVPTPHLDGKHVVFGQVIKGIGVARILENVE 166          
BLAST of CV998089 vs. ExPASy Swiss-Prot
Match: PPIL2_SCHPO (Peptidyl-prolyl cis-trans isomerase cyp8 OS=Schizosaccharomyces pombe GN=cyp8 PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 6.465e-11
Identity = 39/147 (26.53%), Postives = 74/147 (50.34%), Query Frame = 3
Query:   63 TSKGYIIVELFKDGSPETVDKFIDLCQKGYFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHEAFMIGTV--KSKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIINVTL 497
            T+ G I +EL  D +P  V  F+ L ++GY++   FH  I  ++IQ G         +       + +     KH+   I ++  + K++ G + +I   P   L++K  +FGRVV G +V+  +E+V T+ +  PK  + + ++ +
Sbjct:  282 TNHGEINIELHTDYAPHAVYNFVQLAKQGYYRNTIFHRNIARFMIQGGDPSGTGRGGQSIWGKPFKDEFCNPLKHDDRGIISMANRGKNTNGSQFFILYGPAKHLDNKHTIFGRVVGGLNVLDALEKVPTNSNDHPKLPIKLEDIII 428          
BLAST of CV998089 vs. ExPASy Swiss-Prot
Match: PPID_RAT (40 kDa peptidyl-prolyl cis-trans isomerase OS=Rattus norvegicus GN=Ppid PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 6.465e-11
Identity = 44/139 (31.65%), Postives = 69/139 (49.64%), Query Frame = 3
Query:   72 GYIIVELFKDGSPETVDKFIDLC--QKG---------YFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKH--EAFMIGTVKSKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTD 449
            G I++ELF D  P+T + F  LC  +KG         +FKG  FH +IK ++IQ G   +       +  G+         KH  E  +       ++ G + +ITT P P L+ K +VFG+V+KG  V + +E V+ +
Sbjct:   30 GRIVLELFADIVPKTAENFRALCTGEKGTGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGLGVARMLENVEVN 168          
BLAST of CV998089 vs. ExPASy Swiss-Prot
Match: PPID_BOVIN (40 kDa peptidyl-prolyl cis-trans isomerase OS=Bos taurus GN=PPID PE=1 SV=6)

HSP 1 Score: 68.1662 bits (165), Expect = 6.465e-11
Identity = 44/137 (32.12%), Postives = 68/137 (49.64%), Query Frame = 3
Query:   72 GYIIVELFKDGSPETVDKFIDLC--QKG---------YFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKH--EAFMIGTVKSKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVD 443
            G I++ELF D  P+T + F  LC  +KG         +FKG  FH +IK ++IQ G   +       +  G+         KH  E  +       ++ G + +ITT P P L+ K +VFG+V+KG  V + +E V+
Sbjct:   30 GRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVE 166          
BLAST of CV998089 vs. ExPASy Swiss-Prot
Match: PPIB_RAT (Peptidyl-prolyl cis-trans isomerase B OS=Rattus norvegicus GN=Ppib PE=2 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 8.444e-11
Identity = 46/144 (31.94%), Postives = 73/144 (50.69%), Query Frame = 3
Query:   72 GYIIVELFKDGSPETVDKFIDLC--QKGY-FKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKH--EAFMIGTVKSKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIIN 488
            G +   LF    P+TVD F+ L   +KG+ +K   FH VIK+++IQ G           +  G+         KH    ++      KD+ G + +ITT     L+ K +VFG+V++G DVV+++E   TD   +P  DV I++
Sbjct:   58 GRVTFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKVENTKTDSRDKPLKDVIIVD 201          
BLAST of CV998089 vs. ExPASy Swiss-Prot
Match: PPIB1_RHIOR (Peptidyl-prolyl cis-trans isomerase B1 OS=Rhizopus oryzae GN=cyp8 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.444e-11
Identity = 47/149 (31.54%), Postives = 76/149 (51.01%), Query Frame = 3
Query:   66 SKGYIIVELFKDGSPETVDKFIDLC--QKGY-FKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHEAFMIGTVKS--KDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIINVTL 497
            S G I++ L+    P+T + F  L   + GY +KG +FH VIK ++IQ G   +       +  G   +      +H    + ++ +  +D+ G + +ITT   P L+ K +VFGRV++G DVV +IE   T    +P  DV I +  L
Sbjct:   46 SLGRIVLGLYGKTVPKTAENFKQLATGENGYGYKGSTFHRVIKKFMIQGGDFTNHDGTGGKSIYGNRFADENFKLRHSTPGLLSMANAGRDTNGSQFFITTVVTPWLDGKHVVFGRVLEGMDVVTKIENTPTGSRSKPSVDVVIADCGL 194          
The following BLAST results are available for this feature:
BLAST of CV998089 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
PPIL3_GIBZE4.950e-1129.49Peptidyl-prolyl cis-trans isomerase-like 3 OS=Gibb... [more]
PPID_MOUSE4.950e-1131.6540 kDa peptidyl-prolyl cis-trans isomerase OS=Mus ... [more]
PPID_HUMAN4.950e-1132.1240 kDa peptidyl-prolyl cis-trans isomerase OS=Homo... [more]
PPIL2_SCHPO6.465e-1126.53Peptidyl-prolyl cis-trans isomerase cyp8 OS=Schizo... [more]
PPID_RAT6.465e-1131.6540 kDa peptidyl-prolyl cis-trans isomerase OS=Ratt... [more]
PPID_BOVIN6.465e-1132.1240 kDa peptidyl-prolyl cis-trans isomerase OS=Bos ... [more]
PPIB_RAT8.444e-1131.94Peptidyl-prolyl cis-trans isomerase B OS=Rattus no... [more]
PPIB1_RHIOR8.444e-1131.54Peptidyl-prolyl cis-trans isomerase B1 OS=Rhizopus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_D-5_T7 Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07-153 Citrus sinensis cDNA clone TC47_G06_036, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV998089 ID=CV998089; Name=CV998089; organism=Citrus sinensis; type=EST; length=822bp
GATCAAGGATGATGCCTATGCGGTTTCAAGAAGTTTGATCTTCCTGGCCA
TGCTGTTTAAATACATCTAAAGGTTATATAATAGTGGAACTCTTCAAAGA
TGGTTCACCAGAAACCGTGGATAAATTTATTGACTTGTGTCAAAAGGGGT
ACTTCAAAGGTATGTCTTTCCATCATGTGATCAAAAACTATGTCATTCAA
GCTGGGCATTCCAAGGATCTTGCAGCTGCTGATGAATGGACATCAAGAGG
GAAGATCCGCAGTCAGCTGAGGACCAGTCCGAAGCATGAGGCGTTTATGA
TTGGAACTGTAAAATCTAAAGACAGCAAAGGATTTGAGCTATACATTACA
ACTGCACCAATACCAGATTTAAATGATAAGCTTATTGTGTTTGGACGAGT
AGTGAAGGGTGAGGATGTGGTGCAGGAAATTGAAGAGGTGGATACAGATG
AGCACTATCAGCCTAAGTCAGATGTAGGGATCATCAATGTGACACTAAAG
CATGCAATATGAGGATGTATGCTAAGCTACCGAAAAGATTTTACACCTAG
CCAAGTTTCTTGTTGTGCTATTGATTTTCGTATTAATCTTGTATTGCTGC
TGCTAGAACGCTTGGTTCAGGTTTTCTTTCTTGTCTCTCCCCGTTTATTG
TACTGCAGGGAGAGAAGGGTTCAAAGAAATGTTGTTGCATTGTTCAAAAA
AGTAAAGGTTTGTACTTCTTAGTAGGCAAAATACACAATTTTGTCAATTT
CATATTGAAATTTTTCTTGTAAAATTTCATGAGAAAATGTTTTTAACTTA
TTGCGGCCTTTTAAAGGTGAAA
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