CV998087 | Citrus Genome Database

Overview


Name	CV998087
Unique Name	CV998087
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	882

Libraries


Library Name	Type
Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07-153	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CV998087 vs. ExPASy Swiss-Prot
Match: FXL13_HUMAN (F-box/LRR-repeat protein 13 OS=Homo sapiens GN=FBXL13 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 3.128e-14
Identity = 58/238 (24.37%), Postives = 98/238 (41.18%), Query Frame = 3

Query:  165 TSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRAL--ITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLNITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRI 872
            T   +R I+ GCP +  L+L NT ++ +  +  +    H L+ L L  C   TD+ L  + +   C KLI L +  C+ I  +G + +   C  +  ++I D   + D  + +L+   +                           +T L  TG PH+S+  F  + +     KL+ +       VTD   + + K  PNL    +  C  ++D+ L S +     L  L L  C RI
Sbjct:  259 TDESMRHISEGCPGVLCLNLSNT-TITNRTMRLLPRHFHNLQNLSLAYCRRFTDKGLQYLNLGNGCHKLIYLDLSGCTQISVQGFRYIANSCTGIMHLTINDMPTLTDNCVKALVEKCS--------------------------RITSLVFTGAPHISDCTFRALSA----CKLRKIRFEGNKRVTDASFKFIDKNYPNLSHIYMADCKGITDSSLRSLSPLK-QLTVLNLANCVRI 464

HSP 2 Score: 76.2554 bits (186), Expect = 2.648e-13
Identity = 69/277 (24.91%), Postives = 120/277 (43.32%), Query Frame = 3

Query:  108 SRGGLGKLSIHGNNSTRGVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGL--CEIANGCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQ-RLNITDVSLAVI-------GHYGMA------------------VTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQL 854
            S G  G L ++ +N+T  +T+  +R + R   +L+ LSL       D+GL    + NGCH+L  LDL  C  I+ +    IA +C  ++ LTI    ++ +  ++A+   C  + S+       + D    +L   +   L K++ +    +TD S   I        H  MA                  +T L L     + + G      G    +++ L +++C+ ++D  +  + + CPNL    LR C  L+  G I +    FSL S+ L
Sbjct:  267 SEGCPGVLCLNLSNTT--ITNRTMRLLPRHFHNLQNLSLAYCRRFTDKGLQYLNLGNGCHKLIYLDLSGCTQISVQGFRYIANSCTGIMHLTINDMPTLTDNCVKALVEKCSRITSLVFTGAPHISDCTFRAL---SACKLRKIRFEGNKRVTDASFKFIDKNYPNLSHIYMADCKGITDSSLRSLSPLKQLTVLNLANCVRIGDMGLKQFLDGPASMRIRELNLSNCVRLSDASVMKLSERCPNLNYLSLRNCEHLTAQG-IGYIVNIFSLVSIDL 537

HSP 3 Score: 75.8702 bits (185), Expect = 3.459e-13
Identity = 58/241 (24.07%), Postives = 116/241 (48.13%), Query Frame = 3

Query:  156 RGVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANG--CHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESC------------------------SSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLN-ITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLS 797
            +G+T + LR+++     L VL+L N   +GD GL +  +G    ++ +L+L  C  ++D +++ +++ CP L  L++ +C                        + I NEGL  + R    LK +S+ +C  + D GI +   S+   LE + +   + ++D+ +  +  Y + +T L + G P +++    ++ +      L  L I+ C+ +TD  LE +  GC  L+   ++ C  +S
Sbjct:  437 KGITDSSLRSLSP-LKQLTVLNLANCVRIGDMGLKQFLDGPASMRIRELNLSNCVRLSDASVMKLSERCPNLNYLSLRNCEHLTAQGIGYIVNIFSLVSIDLSGTDISNEGLNVLSRH-KKLKELSVSECYRITDDGIQAFCKSSLI-LEHLDVSYCSQLSDMIIKALAIYCINLTSLSIAGCPKITDSAMEMLSAK--CHYLHILDISGCVLLTDQILEDLQIGCKQLRILKMQYCTNIS 672

[Close]

BLAST of CV998087 vs. ExPASy Swiss-Prot
Match: FBL12_ARATH (F-box/LRR-repeat protein 12 OS=Arabidopsis thaliana GN=FBL12 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.336e-14
Identity = 66/241 (27.39%), Postives = 108/241 (44.81%), Query Frame = 3

Query:  159 GVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLNITDVSLAVIGHYGMA--VTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRIT 875
            G++  G+  IA  CP+L V+SL+  + + D GL  +A     L+ ++L  CP ++D  +  +++ C +L  + I +C SI   G        P L  +    C+L   +GI  ++S        +      I    L  IG  G+A  +  L L     V +     +  G  L  L+   +  C  V   G EAVGK C NLK+  + +C  L D GL++      +L+ L +    R+T
Sbjct:  129 GISDDGISTIASFCPNLSVVSLYRCN-ISDIGLETLARASLSLKCVNLSYCPLVSDFGIKALSQACLQLESVKISNCKSITGVGFSGCS---PTLGYVDADSCQLE-PKGITGIISGGGIEFLNISGVSCYIRKDGLVPIGS-GIASKLRILNLRMCRTVGDESIEAIAKGCPL--LQEWNLALCHEVKISGWEAVGKWCRNLKKLHVNRCRNLCDQGLLALRCGCMNLQILYMNGNARLT 361

HSP 2 Score: 76.6406 bits (187), Expect = 2.028e-13
Identity = 69/245 (28.16%), Postives = 114/245 (46.53%), Query Frame = 3

Query:  207 LRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRL-NITDVSLA----VIGHY-----------------GMAVTDLFLTGLP-HVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRI 872
            L  LSL   + + D  L  +     +L  L L  C  I+D  + TIA  CP L  +++  C +I + GL+ + R   +LK +++  C LV D GI + LS A   LE VK+    +IT V  +     +G+                  G  +  L ++G+  ++ + G   +GSG    KL+ L +  C  V D  +EA+ KGCP L+++ L  C  +  +G  +  K   +L+ L +  C  +
Sbjct:   93 LEHLSLSGCTVLNDSSLDSLRYPGARLHTLYLDCCFGISDDGISTIASFCPNLSVVSLYRC-NISDIGLETLARASLSLKCVNLSYCPLVSDFGIKA-LSQACLQLESVKISNCKSITGVGFSGCSPTLGYVDADSCQLEPKGITGIISGGGIEFLNISGVSCYIRKDGLVPIGSGIA-SKLRILNLRMCRTVGDESIEAIAKGCPLLQEWNLALCHEVKISGWEAVGKWCRNLKKLHVNRCRNL 334

[Close]

BLAST of CV998087 vs. ExPASy Swiss-Prot
Match: FXL14_MOUSE (F-box/LRR-repeat protein 14 OS=Mus musculus GN=Fbxl14 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.553e-13
Identity = 65/261 (24.90%), Postives = 122/261 (46.74%), Query Frame = 3

Query:  120 LGKLSIHGNNSTRGVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRAL-------ITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRL-NITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQ 878
            +G L     +  + +T + L  IA+    L VL L   S++ + GL  IA G  +L+ L+L  C  ++D  +        + A+ C  L  LT++ C  + +  L+ + R    L+ +++  C  + D G+  L  S   SL  + L+   NI+D  +  +    + ++ L ++    V ++    +  G  L  LKSL++ SC  ++D G+  + +    L+   + +C  ++D GL   A+    L  + L  C RIT+
Sbjct:  116 IGSLRALNLSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHL--SHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQG--LDGLKSLSLCSCH-ISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITK 371

HSP 2 Score: 76.2554 bits (186), Expect = 2.648e-13
Identity = 72/255 (28.24%), Postives = 113/255 (44.31%), Query Frame = 3

Query:  189 ARGCPSLRVLSLWNTSSVGDEGLCEIAN----GCHQL----------------EKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASL------LSSATYSLEKVKLQRL-NITDVSLAVI--GHYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECH 866
            ARG   +++LSL  + S   +G+  I +    GC+ L                  L+L  C  ITD +L  IA+    L  L +  CS+I N GL  +      LKS++++ CR + D GI  L       +     LE++ LQ    +TD+SL  I  G  G+ + +L   G   +S+ G   +     +  L+SL + SC  ++D G+  +  G   L    +  C  + D  L   A+    L+SL L  CH
Sbjct:   67 ARGIRRVQILSLRRSLSYVIQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG--GISDAGLLHLSH---MGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCH 316

HSP 3 Score: 72.4034 bits (176), Expect = 3.824e-12
Identity = 74/264 (28.03%), Postives = 121/264 (45.83%), Query Frame = 3

Query:   60 KKATDIRLAAIAVGTASRGGLGKLSIHGNNSTRGVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIAN-------GCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLNIT------DVSLAVIGHYGMAVTDLFLTGLPHVSERGF-WVMGSGHGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGL 809
            K+ TD  L  IA       GL  L + G ++   +T+ GL  IA G   L+ L+L +   + D G+  +A        GC  LE+L L  C  +TD +L  I++    L  L +  C  I + GL  +     +L+S++++ C  + D GI  L      ++  ++L  L+++      D SLA I      +  L L    H+S+ G   ++   HGL   ++L I  C+ +TD GLE + +    L    L  C  ++  GL
Sbjct:  128 KQITDSSLGRIAQYLK---GLEVLELGGCSN---ITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHM-GSLRSLNLRSCDNISDTGIMHL------AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSC-HISDDGINRMVRQMHGL---RTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGL 374

[Close]

BLAST of CV998087 vs. ExPASy Swiss-Prot
Match: FXL14_HUMAN (F-box/LRR-repeat protein 14 OS=Homo sapiens GN=FBXL14 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.553e-13
Identity = 65/261 (24.90%), Postives = 122/261 (46.74%), Query Frame = 3

Query:  120 LGKLSIHGNNSTRGVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRAL-------ITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRL-NITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQ 878
            +G L     +  + +T + L  IA+    L VL L   S++ + GL  IA G  +L+ L+L  C  ++D  +        + A+ C  L  LT++ C  + +  L+ + R    L+ +++  C  + D G+  L  S   SL  + L+   NI+D  +  +    + ++ L ++    V ++    +  G  L  LKSL++ SC  ++D G+  + +    L+   + +C  ++D GL   A+    L  + L  C RIT+
Sbjct:  116 IGSLRALNLSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHL--SHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQG--LDGLKSLSLCSCH-ISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITK 371

HSP 2 Score: 76.2554 bits (186), Expect = 2.648e-13
Identity = 72/255 (28.24%), Postives = 113/255 (44.31%), Query Frame = 3

Query:  189 ARGCPSLRVLSLWNTSSVGDEGLCEIAN----GCHQL----------------EKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASL------LSSATYSLEKVKLQRL-NITDVSLAVI--GHYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECH 866
            ARG   +++LSL  + S   +G+  I +    GC+ L                  L+L  C  ITD +L  IA+    L  L +  CS+I N GL  +      LKS++++ CR + D GI  L       +     LE++ LQ    +TD+SL  I  G  G+ + +L   G   +S+ G   +     +  L+SL + SC  ++D G+  +  G   L    +  C  + D  L   A+    L+SL L  CH
Sbjct:   67 ARGIRRVQILSLRRSLSYVIQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG--GISDAGLLHLSH---MGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCH 316

HSP 3 Score: 72.4034 bits (176), Expect = 3.824e-12
Identity = 74/264 (28.03%), Postives = 121/264 (45.83%), Query Frame = 3

Query:   60 KKATDIRLAAIAVGTASRGGLGKLSIHGNNSTRGVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIAN-------GCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLNIT------DVSLAVIGHYGMAVTDLFLTGLPHVSERGF-WVMGSGHGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGL 809
            K+ TD  L  IA       GL  L + G ++   +T+ GL  IA G   L+ L+L +   + D G+  +A        GC  LE+L L  C  +TD +L  I++    L  L +  C  I + GL  +     +L+S++++ C  + D GI  L      ++  ++L  L+++      D SLA I      +  L L    H+S+ G   ++   HGL   ++L I  C+ +TD GLE + +    L    L  C  ++  GL
Sbjct:  128 KQITDSSLGRIAQYLK---GLEVLELGGCSN---ITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHM-GSLRSLNLRSCDNISDTGIMHL------AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSC-HISDDGINRMVRQMHGL---RTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGL 374

[Close]

BLAST of CV998087 vs. ExPASy Swiss-Prot
Match: FXL14_BOVIN (F-box/LRR-repeat protein 14 OS=Bos taurus GN=FBXL14 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.553e-13
Identity = 65/261 (24.90%), Postives = 122/261 (46.74%), Query Frame = 3

Query:  120 LGKLSIHGNNSTRGVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRAL-------ITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRL-NITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQ 878
            +G L     +  + +T + L  IA+    L VL L   S++ + GL  IA G  +L+ L+L  C  ++D  +        + A+ C  L  LT++ C  + +  L+ + R    L+ +++  C  + D G+  L  S   SL  + L+   NI+D  +  +    + ++ L ++    V ++    +  G  L  LKSL++ SC  ++D G+  + +    L+   + +C  ++D GL   A+    L  + L  C RIT+
Sbjct:  116 IGSLRALNLSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHL--SHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQG--LDGLKSLSLCSCH-ISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITK 371

HSP 2 Score: 76.2554 bits (186), Expect = 2.648e-13
Identity = 72/255 (28.24%), Postives = 113/255 (44.31%), Query Frame = 3

Query:  189 ARGCPSLRVLSLWNTSSVGDEGLCEIAN----GCHQL----------------EKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASL------LSSATYSLEKVKLQRL-NITDVSLAVI--GHYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECH 866
            ARG   +++LSL  + S   +G+  I +    GC+ L                  L+L  C  ITD +L  IA+    L  L +  CS+I N GL  +      LKS++++ CR + D GI  L       +     LE++ LQ    +TD+SL  I  G  G+ + +L   G   +S+ G   +     +  L+SL + SC  ++D G+  +  G   L    +  C  + D  L   A+    L+SL L  CH
Sbjct:   67 ARGIRRVQILSLRRSLSYVIQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG--GISDAGLLHLSH---MGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCH 316

HSP 3 Score: 72.4034 bits (176), Expect = 3.824e-12
Identity = 74/264 (28.03%), Postives = 121/264 (45.83%), Query Frame = 3

Query:   60 KKATDIRLAAIAVGTASRGGLGKLSIHGNNSTRGVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIAN-------GCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLNIT------DVSLAVIGHYGMAVTDLFLTGLPHVSERGF-WVMGSGHGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGL 809
            K+ TD  L  IA       GL  L + G ++   +T+ GL  IA G   L+ L+L +   + D G+  +A        GC  LE+L L  C  +TD +L  I++    L  L +  C  I + GL  +     +L+S++++ C  + D GI  L      ++  ++L  L+++      D SLA I      +  L L    H+S+ G   ++   HGL   ++L I  C+ +TD GLE + +    L    L  C  ++  GL
Sbjct:  128 KQITDSSLGRIAQYLK---GLEVLELGGCSN---ITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHM-GSLRSLNLRSCDNISDTGIMHL------AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSC-HISDDGINRMVRQMHGL---RTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGL 374

[Close]

BLAST of CV998087 vs. ExPASy Swiss-Prot
Match: FXL13_MOUSE (F-box/LRR-repeat protein 13 OS=Mus musculus GN=Fbxl13 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 5.900e-13
Identity = 58/244 (23.77%), Postives = 109/244 (44.67%), Query Frame = 3

Query:  165 TSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRAL--ITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQ-RLNITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLGLEAV--GKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQL 881
            T   +R I+ GCP +  L+L NT ++ +  +  +    H L+ L L  C   TD+ L  + +   C KLI L +  C+       Q +   CP + S+ +     + D    +L S     L+K++ +    I+D     I      +  +++     +++     + S   L++L  L +T+C+ + D+GL+    G     L++  L  C+ L D+ +I  ++   +L  L L  C  +T L
Sbjct:  343 TDESMRHISEGCPGVLYLNLSNT-TITNRTMRLLPRYFHNLQNLSLAYCRKFTDKGLQYLNLGNGCHKLIYLDLSGCT-------QVLVEKCPRISSVVLIGSPHISDSAFKALSSC---DLKKIRFEGNKRISDACFKSIDRNYPGINHIYMVDCKGLTDSS---LKSLSLLKQLTVLNLTNCIRIGDIGLKHFFDGPASIRLRELNLTNCSLLGDSSVIRLSERCPNLHYLNLRNCEHLTDL 572

[Close]

BLAST of CV998087 vs. ExPASy Swiss-Prot
Match: FXL16_RAT (F-box/LRR-repeat protein 16 OS=Rattus norvegicus GN=Fbxl16 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.519e-12
Identity = 54/214 (25.23%), Postives = 104/214 (48.60%), Query Frame = 3

Query:  234 SSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRL-NITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRI 872
            S++ D GL  +      + +L+L  C   T+  L +      ++  L++  C ++ ++ + A+ +  PNL  +S++    V D  +A   +   +S   ++L     IT+  +  + H    +T L L+G   V++ G  ++     L+KL+SL ++ C  +TD+ LE V      L++  L +C  ++D GL S+     SL SL L  C ++
Sbjct:  203 STITDAGLEVMLEQMQGVVRLELSGCNDFTEAGLWSSLS--ARITSLSVSDCINVADDAIAAISQLLPNLAELSLQAYH-VTDTALAYFTARQGHSTHTLRLLSCWEITNHGVVNVVHSLPNLTSLSLSGCSKVTDDGVELVAEN--LRKLRSLDLSWCPRITDMALEYVACDLHRLEELVLDRCVRITDTGL-SYLSTMSSLRSLYLRWCCQV 410

HSP 2 Score: 71.2478 bits (173), Expect = 8.519e-12
Identity = 55/187 (29.41%), Postives = 86/187 (45.99%), Query Frame = 3

Query:  318 ITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLNITDVSLAVI-GHYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRIT 875
            ITD  L  + +    ++ L +  C+     GL +       + S+S+ DC  V D  IA++ S    +L ++ LQ  ++TD +LA      G +   L L     ++  G  V+   H L  L SL+++ C  VTD G+E V +    L+   L  C  ++D  L   A     LE L L+ C RIT
Sbjct:  205 ITDAGLEVMLEQMQGVVRLELSGCNDFTEAGLWS--SLSARITSLSVSDCINVADDAIAAI-SQLLPNLAELSLQAYHVTDTALAYFTARQGHSTHTLRLLSCWEITNHG--VVNVVHSLPNLTSLSLSGCSKVTDDGVELVAENLRKLRSLDLSWCPRITDMALEYVACDLHRLEELVLDRCVRIT 386

[Close]

BLAST of CV998087 vs. ExPASy Swiss-Prot
Match: FXL16_MOUSE (F-box/LRR-repeat protein 16 OS=Mus musculus GN=Fbxl16 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.519e-12
Identity = 54/214 (25.23%), Postives = 104/214 (48.60%), Query Frame = 3

Query:  234 SSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRL-NITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRI 872
            S++ D GL  +      + +L+L  C   T+  L +      ++  L++  C ++ ++ + A+ +  PNL  +S++    V D  +A   +   +S   ++L     IT+  +  + H    +T L L+G   V++ G  ++     L+KL+SL ++ C  +TD+ LE V      L++  L +C  ++D GL S+     SL SL L  C ++
Sbjct:  203 STITDAGLEVMLEQMQGVVRLELSGCNDFTEAGLWSSLS--ARITSLSVSDCINVADDAIAAISQLLPNLAELSLQAYH-VTDTALAYFTARQGHSTHTLRLLSCWEITNHGVVNVVHSLPNLTSLSLSGCSKVTDDGVELVAEN--LRKLRSLDLSWCPRITDMALEYVACDLHRLEELVLDRCVRITDTGL-SYLSTMSSLRSLYLRWCCQV 410

HSP 2 Score: 71.2478 bits (173), Expect = 8.519e-12
Identity = 55/187 (29.41%), Postives = 86/187 (45.99%), Query Frame = 3

Query:  318 ITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLNITDVSLAVI-GHYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRIT 875
            ITD  L  + +    ++ L +  C+     GL +       + S+S+ DC  V D  IA++ S    +L ++ LQ  ++TD +LA      G +   L L     ++  G  V+   H L  L SL+++ C  VTD G+E V +    L+   L  C  ++D  L   A     LE L L+ C RIT
Sbjct:  205 ITDAGLEVMLEQMQGVVRLELSGCNDFTEAGLWS--SLSARITSLSVSDCINVADDAIAAI-SQLLPNLAELSLQAYHVTDTALAYFTARQGHSTHTLRLLSCWEITNHG--VVNVVHSLPNLTSLSLSGCSKVTDDGVELVAENLRKLRSLDLSWCPRITDMALEYVACDLHRLEELVLDRCVRIT 386

[Close]

BLAST of CV998087 vs. ExPASy Swiss-Prot
Match: FBL8_ARATH (Putative F-box/LRR-repeat protein 8 OS=Arabidopsis thaliana GN=FBL8 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.113e-11
Identity = 46/139 (33.09%), Postives = 65/139 (46.76%), Query Frame = 3

Query:  153 TRGVTSAGLRAIARGCPSLRVLSL--WNTSSVGDEGLCEIA-------------------------NGCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQG 488
            T   T+ GL  +A  C  LR L +  W T+ +GDEGL  +A                         + C  LE+L LC    + D  L  IA+ C  L  L I++C  I ++G++A+G  CPNL  + +K CR V  QG
Sbjct:  326 TPDCTNVGLALVAERCKLLRKLHIDGWKTNRIGDEGLIVVAKYCWNLQELVLIGVNPTKLSLEAIVSNCLNLERLALCGSDTVGDTELCCIAEKCLALRKLCIKNCP-ITDDGIKALGNGCPNLLKVKVKKCRGVTTQG 463

[Close]

BLAST of CV998087 vs. ExPASy Swiss-Prot
Match: AMN1_PONAB (Protein AMN1 homolog OS=Pongo abelii GN=AMN1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.113e-11
Identity = 50/174 (28.74%), Postives = 86/174 (49.43%), Query Frame = 3

Query:  198 CPSLRVLSL----WNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSS-ATYSLEKVKLQR-LNITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTIT 701
            C  L+ L+L     N  SV  EG+  +A+ C  L +  L +C  +TD  ++ +A NC  L  + +  C SI +  L A+G+ CP L+ +     + V D G+ +L+S      LE++ +   +N+TD ++  +  Y   +  L   G P +++    V+    G  KLK +T T
Sbjct:   84 CRKLKKLNLNASKGNRVSVTSEGIKVVASSCSYLHEASLKRCCNLTDEGVVALALNCQLLKIINLGGCLSITDVSLHALGKNCPFLQCVDFSATQ-VSDSGVIALVSGPCAKKLEEIHMGHCVNLTDGAVEAVLTYCPQIRILLFHGCPLITDHSREVLEQLVGPNKLKQVTWT 256

The following BLAST results are available for this feature:

BLAST of CV998087 vs. ExPASy Swiss-Prot

BLAST of CV998087 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37


Match Name	E-value	Identity	Description
FXL13_HUMAN	3.128e-14	24.37	F-box/LRR-repeat protein 13 OS=Homo sapiens GN=FBX...	[more]
FBL12_ARATH	5.336e-14	27.39	F-box/LRR-repeat protein 12 OS=Arabidopsis thalian...	[more]
FXL14_MOUSE	1.553e-13	24.90	F-box/LRR-repeat protein 14 OS=Mus musculus GN=Fbx...	[more]
FXL14_HUMAN	1.553e-13	24.90	F-box/LRR-repeat protein 14 OS=Homo sapiens GN=FBX...	[more]
FXL14_BOVIN	1.553e-13	24.90	F-box/LRR-repeat protein 14 OS=Bos taurus GN=FBXL1...	[more]
FXL13_MOUSE	5.900e-13	23.77	F-box/LRR-repeat protein 13 OS=Mus musculus GN=Fbx...	[more]
FXL16_RAT	8.519e-12	25.23	F-box/LRR-repeat protein 16 OS=Rattus norvegicus G...	[more]
FXL16_MOUSE	8.519e-12	25.23	F-box/LRR-repeat protein 16 OS=Mus musculus GN=Fbx...	[more]
FBL8_ARATH	1.113e-11	33.09	Putative F-box/LRR-repeat protein 8 OS=Arabidopsis...	[more]
AMN1_PONAB	1.113e-11	28.74	Protein AMN1 homolog OS=Pongo abelii GN=AMN1 PE=2 ...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS07_D-4_T3 Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07-153 Citrus sinensis cDNA clone TC16_H02_002, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CV998087 ID=CV998087; Name=CV998087; organism=Citrus sinensis; type=EST; length=882bp
CTGATGCTGAAGATCCGGATGTTGAGCGTGACGGATACCTTTCCAGGAGC
TTGGAAGGAAAGAAGGCAACGGATATTAGACTTGCTGCCATTGCTGTTGG
TACTGCCAGCCGTGGAGGACTGGGCAAGCTTTCCATCCATGGAAACAATT
CTACTCGTGGGGTGACAAGCGCTGGCCTTAGGGCTATTGCCCGTGGCTGC
CCATCTTTAAGGGTTCTTTCCCTCTGGAATACATCTTCTGTAGGGGATGA
AGGCCTTTGTGAGATTGCTAATGGATGTCATCAGCTAGAGAAGCTTGACC
TTTGCCAGTGTCCTGCTATTACTGACCGAGCTTTGATCACAATTGCAAAG
AACTGCCCTAAATTGATTGATCTGACAATAGAGTCTTGCTCAAGCATCGG
AAATGAAGGTCTGCAGGCTGTTGGGAGATTCTGCCCCAATCTGAAGTCCA
TTTCAATCAAGGATTGCCGCCTTGTTGGGGATCAAGGGATTGCTAGTTTG
TTGTCTTCAGCCACTTATTCTCTGGAGAAAGTGAAGCTGCAAAGGTTGAA
CATTACTGATGTTTCTCTTGCTGTTATTGGACACTATGGCATGGCAGTTA
CTGATCTCTTCCTTACTGGCCTTCCACATGTGAGTGAGAGAGGCTTCTGG
GTTATGGGCAGTGGTCATGGGTTGCAAAAATTGAAGTCCTTGACAATTAC
ATCATGCATGGGAGTAACGGATTTGGGCCTTGAAGCTGTGGGCAAGGGGT
GCCCAAATTTGAAGCAGTTCTGCCTCCGAAAATGTGCCTTTTTATCTGAC
AATGGACTGATCTCTTTTGCTAAAGCTGCTTTCTCACTTGAAAGCCTTCA
GTTGGAAGAGTGCCACAGGATCACCCAACTTG