CV998087

Overview
NameCV998087
Unique NameCV998087
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV998087 vs. ExPASy Swiss-Prot
Match: AMN1_HUMAN (Protein AMN1 homolog OS=Homo sapiens GN=AMN1 PE=2 SV=4)

HSP 1 Score: 70.8626 bits (172), Expect = 1.113e-11
Identity = 50/174 (28.74%), Postives = 86/174 (49.43%), Query Frame = 3
Query:  198 CPSLRVLSL----WNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSS-ATYSLEKVKLQR-LNITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTIT 701
            C  L+ L+L     N  SV  EG+  +A+ C  L +  L +C  +TD  ++ +A NC  L  + +  C SI +  L A+G+ CP L+ +     + V D G+ +L+S      LE++ +   +N+TD ++  +  Y   +  L   G P +++    V+    G  KLK +T T
Sbjct:   84 CRKLKKLNLNASKGNRVSVTSEGIKAVASSCSYLHEASLKRCCNLTDEGVVALALNCQLLKIIDLGGCLSITDVSLHALGKNCPFLQCVDFSATQ-VSDSGVIALVSGPCAKKLEEIHMGHCVNLTDGAVEAVLTYCPQIRILLFHGCPLITDHSREVLEQLVGPNKLKQVTWT 256          

HSP 2 Score: 68.5514 bits (166), Expect = 5.522e-11
Identity = 59/206 (28.64%), Postives = 105/206 (50.97%), Query Frame = 3
Query:  207 LRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCS----SIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQR-LNITDVSLAVIGHYG--MAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDN 803
            ++++S+     + D  + EI +   +++ LDL  C  I+D AL+ ++ NC KL  L + +      S+ +EG++AV   C  L   S+K C  + D+G+ +L  +    L+ + L   L+ITDVSL  +G     +   D   T    VS+ G   + SG   +KL+ + +  C+ +TD  +EAV   CP ++      C  ++D+
Sbjct:   41 IKIMSM--QGQITDSNISEILHP--EVQTLDLRSCD-ISDAALLHLS-NCRKLKKLNLNASKGNRVSVTSEGIKAVASSCSYLHEASLKRCCNLTDEGVVALALNCQL-LKIIDLGGCLSITDVSLHALGKNCPFLQCVDFSAT---QVSDSGVIALVSGPCAKKLEEIHMGHCVNLTDGAVEAVLTYCPQIRILLFHGCPLITDH 236          
BLAST of CV998087 vs. ExPASy Swiss-Prot
Match: FXL16_HUMAN (F-box/LRR-repeat protein 16 OS=Homo sapiens GN=FBXL16 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.453e-11
Identity = 54/214 (25.23%), Postives = 104/214 (48.60%), Query Frame = 3
Query:  234 SSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRL-NITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRI 872
            S++ D GL  +      + +L+L  C   T+  L +      ++  L++  C ++ ++ + A+ +  PNL  +S++    V D  +A   +   +S   ++L     IT+  +  + H    +T L L+G   V++ G  ++     L+KL+SL ++ C  +TD+ LE V      L++  L +C  ++D GL S+     SL SL L  C ++
Sbjct:  203 STITDAGLEVMLEQMQGVVRLELSGCNDFTEAGLWSSLS--ARITSLSVSDCINVADDAIAAISQLLPNLAELSLQAYH-VTDTALAYFTARQGHSTHTLRLLSCWEITNHGVVNVVHSLPNLTALSLSGCSKVTDDGVELVAEN--LRKLRSLDLSWCPRITDMALEYVACDLHRLEELVLDRCVRITDTGL-SYLSTMSSLRSLYLRWCCQV 410          

HSP 2 Score: 70.0922 bits (170), Expect = 1.898e-11
Identity = 54/187 (28.88%), Postives = 86/187 (45.99%), Query Frame = 3
Query:  318 ITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLNITDVSLAVI-GHYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRIT 875
            ITD  L  + +    ++ L +  C+     GL +       + S+S+ DC  V D  IA++ S    +L ++ LQ  ++TD +LA      G +   L L     ++  G  V+   H L  L +L+++ C  VTD G+E V +    L+   L  C  ++D  L   A     LE L L+ C RIT
Sbjct:  205 ITDAGLEVMLEQMQGVVRLELSGCNDFTEAGLWS--SLSARITSLSVSDCINVADDAIAAI-SQLLPNLAELSLQAYHVTDTALAYFTARQGHSTHTLRLLSCWEITNHG--VVNVVHSLPNLTALSLSGCSKVTDDGVELVAENLRKLRSLDLSWCPRITDMALEYVACDLHRLEELVLDRCVRIT 386          
BLAST of CV998087 vs. ExPASy Swiss-Prot
Match: AMN1_RAT (Protein AMN1 homolog OS=Rattus norvegicus GN=Amn1 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.453e-11
Identity = 57/181 (31.49%), Postives = 94/181 (51.93%), Query Frame = 3
Query:  282 QLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESC----SSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQR-LNITDVSLAVIGHYG--MAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDN 803
            ++++LDL  C  I+D AL  + K C KL  L ++SC    +SI +EG++AV   C +L  IS+K C  V D+G+ +L  +    L+ + L   L+ITD SL  +G     +   D   T    VS+ G   + SG   ++L+ + +  C+ +TD  +EA    CP +       C  ++D+
Sbjct:   62 EVQRLDLRSCN-ISDVALQHLCK-CRKLKALNLKSCREHRNSITSEGIKAVASSCSDLHEISLKGCCSVTDEGVLALALNCQL-LKIIDLGGCLSITDESLHALGKNCPFLQCVDFSTT---QVSDNGVVALVSGPCAKQLEEINMGYCINLTDKAVEAALTACPQICILLFHGCPLITDH 236          

HSP 2 Score: 70.4774 bits (171), Expect = 1.453e-11
Identity = 47/172 (27.33%), Postives = 87/172 (50.58%), Query Frame = 3
Query:  198 CPSLRVLSLWNT----SSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSS-ATYSLEKVKL-QRLNITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLT 695
            C  L+ L+L +     +S+  EG+  +A+ C  L ++ L  C ++TD  ++ +A NC  L  + +  C SI +E L A+G+ CP L+ +     + V D G+ +L+S      LE++ +   +N+TD ++         +  L   G P +++    V+    G +KLK +T
Sbjct:   84 CRKLKALNLKSCREHRNSITSEGIKAVASSCSDLHEISLKGCCSVTDEGVLALALNCQLLKIIDLGGCLSITDESLHALGKNCPFLQCVDFSTTQ-VSDNGVVALVSGPCAKQLEEINMGYCINLTDKAVEAALTACPQICILLFHGCPLITDHSREVLEQLIGSRKLKQVT 254          
BLAST of CV998087 vs. ExPASy Swiss-Prot
Match: FB37_ARATH (F-box protein At1g47056 OS=Arabidopsis thaliana GN=At1g47056 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.522e-11
Identity = 53/173 (30.64%), Postives = 76/173 (43.93%), Query Frame = 3
Query:   33 GYLSRSLEGKKATDIRLAAIAVGTASRGGLGKLSIHGNNSTRGVTSAGLRAIARGCPSLRVLSL--WNTSSVGDEGLCEIANGCHQL-------------------------EKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCR 470
            G +   LE  + +D+ L+AI+  ++        S+H    T   T+ GL AIA  C  LR L +  W  + +GDEGL  +A  C QL                         E+L LC C    D  L  IA  CP L  L I++C  I + G++ +   CP L  + IK C+
Sbjct:  260 GVVEIHLERMQVSDVALSAISYCSSLE------SLH-LVKTPECTNFGLAAIAEKCKRLRKLHIDGWKANLIGDEGLVAVAKFCSQLQELVLIGVNPTTLSLGMLAAKCLNLERLALCGCDTFGDPELSCIAAKCPALRKLCIKNC-PISDVGIENLANGCPGLTKVKIKKCK 424          
BLAST of CV998087 vs. ExPASy Swiss-Prot
Match: FBL15_ARATH (F-box/LRR-repeat protein 15 OS=Arabidopsis thaliana GN=FBL15 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.212e-11
Identity = 58/257 (22.57%), Postives = 106/257 (41.25%), Query Frame = 3
Query:  162 VTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLNITDVSLAVIGHYGMAVTDLFLTGLPH--------VSERGFWVMGSGHGLQKLKSLTITSCMGVTDLGLEAV------GKGCPNLKQF-----CLRKCAFLSDNGLISFAKAAFSLESLQLEECHRIT 875
            +T   +  ++  CP LR LSL  ++      + +    C  L+ LD+  C  + D A+ + A +CP+L  L + +CS + +E L+ + + C NL  ++   C                 SLE V L  L +  +      H    +T   +T + +        +         S H L +L+S+++  C   TDL L+++         CP L++       LR+ A      L +      SL+ + L +C  ++
Sbjct:  336 ITKCRVMRLSIRCPQLRSLSLKRSN------MSQAMLNCPLLQLLDIASCHKLLDAAIRSAAISCPQLESLDVSNCSCVSDETLREIAQACANLHILNASYC--------------PNISLESVHLPMLTVLKL------HSCEGITSASMTWIANSPALEVLELDNCNLLTTVSLH-LSRLQSISLVHCRKFTDLNLQSIMLSSITVSNCPALRRITITSNALRRLALQKQENLTTLVLQCHSLQEVDLSDCESLS 565          
BLAST of CV998087 vs. ExPASy Swiss-Prot
Match: AMN1_DANRE (Protein AMN1 homolog OS=Danio rerio GN=amn1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.212e-11
Identity = 56/200 (28.00%), Postives = 98/200 (49.00%), Query Frame = 3
Query:  207 LRVLSLWNTSSVGDEGLCEIAN-GCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLN-ITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSD 800
            LR+++ + T  V D  + ++ + G H L   DL  C  I+D AL  I  N   L  + +  C+ I +EGL+ +   CP L+ + +  C  V D GI +L       LE + L+  + ++D +L  +G     +  ++ +G   V+++G   + +G     LK L +  C  +TDL + AV   C N++ F    C  ++D
Sbjct:   37 LRIMTSYGT--VTDSNISQLVHSGTHTL---DLQNCK-ISDSALKQI--NSLHLRTILLRGCAEITSEGLEVLAPRCPYLQVVDLTGCTAVTDSGIQALARHCK-CLEVISLRGCSALSDKALLELGGNCKMLHSIYFSG-TEVTDQGVIGLATGVCSCSLKELQMVRCRNLTDLAVTAVLTNCANIRIFNFHGCPLITD 226          
BLAST of CV998087 vs. ExPASy Swiss-Prot
Match: AMN1_BOVIN (Protein AMN1 homolog OS=Bos taurus GN=AMN1 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.212e-11
Identity = 58/193 (30.05%), Postives = 95/193 (49.22%), Query Frame = 3
Query:  240 VGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCS----SIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQR-LNITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDN 803
            + D  + EI +   +++ LDL  C  I+D AL+ +  NC KL  L ++S      SI ++G++AV   C  L   S+K C  + D+G+ +L  +    L+ + L   L ITDVSL  +G    A           VS+ G   + SG   +KL+ + +  C+ +TD  +EAV   CP +       C  ++D+
Sbjct:   50 ITDSNISEILHP--EVQTLDLRSCD-ISDTALLHLC-NCRKLKKLNLKSSKENRISITSKGIKAVASSCSYLHEASLKRCCNLTDEGVLALALNCRL-LKIIDLGGCLGITDVSLQALGE-NCAFLQCVDFSATQVSDHGVVALVSGPCAKKLEEIHMGHCVNLTDEAVEAVLTCCPQICILLFHGCPLITDH 236          
The following BLAST results are available for this feature:
BLAST of CV998087 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
AMN1_HUMAN1.113e-1128.74Protein AMN1 homolog OS=Homo sapiens GN=AMN1 PE=2 ... [more]
FXL16_HUMAN1.453e-1125.23F-box/LRR-repeat protein 16 OS=Homo sapiens GN=FBX... [more]
AMN1_RAT1.453e-1131.49Protein AMN1 homolog OS=Rattus norvegicus GN=Amn1 ... [more]
FB37_ARATH5.522e-1130.64F-box protein At1g47056 OS=Arabidopsis thaliana GN... [more]
FBL15_ARATH7.212e-1122.57F-box/LRR-repeat protein 15 OS=Arabidopsis thalian... [more]
AMN1_DANRE7.212e-1128.00Protein AMN1 homolog OS=Danio rerio GN=amn1 PE=2 S... [more]
AMN1_BOVIN7.212e-1130.05Protein AMN1 homolog OS=Bos taurus GN=AMN1 PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_D-4_T3 Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07-153 Citrus sinensis cDNA clone TC16_H02_002, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV998087 ID=CV998087; Name=CV998087; organism=Citrus sinensis; type=EST; length=882bp
CTGATGCTGAAGATCCGGATGTTGAGCGTGACGGATACCTTTCCAGGAGC
TTGGAAGGAAAGAAGGCAACGGATATTAGACTTGCTGCCATTGCTGTTGG
TACTGCCAGCCGTGGAGGACTGGGCAAGCTTTCCATCCATGGAAACAATT
CTACTCGTGGGGTGACAAGCGCTGGCCTTAGGGCTATTGCCCGTGGCTGC
CCATCTTTAAGGGTTCTTTCCCTCTGGAATACATCTTCTGTAGGGGATGA
AGGCCTTTGTGAGATTGCTAATGGATGTCATCAGCTAGAGAAGCTTGACC
TTTGCCAGTGTCCTGCTATTACTGACCGAGCTTTGATCACAATTGCAAAG
AACTGCCCTAAATTGATTGATCTGACAATAGAGTCTTGCTCAAGCATCGG
AAATGAAGGTCTGCAGGCTGTTGGGAGATTCTGCCCCAATCTGAAGTCCA
TTTCAATCAAGGATTGCCGCCTTGTTGGGGATCAAGGGATTGCTAGTTTG
TTGTCTTCAGCCACTTATTCTCTGGAGAAAGTGAAGCTGCAAAGGTTGAA
CATTACTGATGTTTCTCTTGCTGTTATTGGACACTATGGCATGGCAGTTA
CTGATCTCTTCCTTACTGGCCTTCCACATGTGAGTGAGAGAGGCTTCTGG
GTTATGGGCAGTGGTCATGGGTTGCAAAAATTGAAGTCCTTGACAATTAC
ATCATGCATGGGAGTAACGGATTTGGGCCTTGAAGCTGTGGGCAAGGGGT
GCCCAAATTTGAAGCAGTTCTGCCTCCGAAAATGTGCCTTTTTATCTGAC
AATGGACTGATCTCTTTTGCTAAAGCTGCTTTCTCACTTGAAAGCCTTCA
GTTGGAAGAGTGCCACAGGATCACCCAACTTG
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