CV998073

Overview
NameCV998073
Unique NameCV998073
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length924
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV998073 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 3.405e-67
Identity = 117/250 (46.80%), Postives = 160/250 (64.00%), Query Frame = 3
Query:  135 GHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXL-PGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGDQPGDNLDCSQPRPY 878
            G+      +  I+S +++  L  +++DA CPARGFYTY +F+ AA  FP F  +G    RKRE+AAF AQ  HETTGGW  AP G YAWG CY  +++P SS            PG+ Y+GRGPIQ++WN NY   G+ALG D L NP+++A    ++F++A+WFWMT +  KPSCH+V++ E++P   DV A R  G+GL TNI+NGG+EC   G+  V NRIGF+  +C   G   G NLDC   +P+
Sbjct:   41 GYSPSPSPVSSIVSEQLYASLFLHKDDAACPARGFYTYASFVRAATRFPRFAATGCADARKREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEINPQSSYCDATDKQWPCYPGKSYHGRGPIQISWNFNYGPAGQALGFDGLRNPEIVANCSDIAFQTALWFWMTPRDTKPSCHQVMVGEYRPGPADVAANRTAGFGLVTNIVNGGLECNRAGDARVNNRIGFYRRYCQVLGVDVGPNLDCEHQQPF 290          
BLAST of CV998073 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.637e-61
Identity = 112/238 (47.06%), Postives = 146/238 (61.34%), Query Frame = 3
Query:  174 SREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLP--GQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPP-KPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGDQPGDNLDCSQPRPY 878
            +  MFE +LP RN+  CP +GFYTYDA+  A + +PGFG +G++  RKRE+AAFFAQT  ET+G         + WGYC + +++P +SD          P    YYGRGP+QL WN NY  CG  LG +LL+ P+ +ATDPVLSF++A+WFWM       PSCHEVI  EW PS  D+ AGR PG+G+ TNII  G EC   G    +NRI ++  +C      PGDNL C     +
Sbjct:   68 TESMFEQMLPNRNNDSCPGKGFYTYDAYFVATEFYPGFGMTGDDDTRKRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELNP-NSDYCDPKTKSSYPCVADYYGRGPLQLRWNYNYGECGNYLGQNLLDEPEKVATDPVLSFEAALWFWMNPHSTGAPSCHEVITGEWSPSEADIEAGRKPGFGMLTNIITNGGECTKDGKTRQQNRIDYYLRYCDMLQVDPGDNLYCDNQETF 304          
BLAST of CV998073 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 2.792e-61
Identity = 119/256 (46.48%), Postives = 163/256 (63.67%), Query Frame = 3
Query:  150 GGELG--KIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSD-XXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQ-PPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGDQPGDNLDCSQPRPYGPYLMAXS 902
            GG  G   +++ + FE +LP+R+DA CPARGFY Y AF+ AA AFP F  +G+   RKRE+AAF AQT H T+       GG Y+WGYCY ++V  A+SD           PG+ Y+ RGP+Q+ +N NY   GEA+G DLL NP+L+ATDP ++FK+A+W WMTA+ P +PS H V+  +W P+  D  AGR PGYGLTTNI+ GG++C   G +   +R+ F+  +C   G   G NLDC    P+   +M+ S
Sbjct:   92 GGRAGVASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCY-KEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQC--AGGNGGADRVAFYKRYCDVLGVGYGPNLDCFGQAPFDGDIMSAS 337          
BLAST of CV998073 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 2.792e-61
Identity = 119/256 (46.48%), Postives = 163/256 (63.67%), Query Frame = 3
Query:  150 GGELG--KIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSD-XXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQ-PPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGDQPGDNLDCSQPRPYGPYLMAXS 902
            GG  G   +++ + FE +LP+R+DA CPARGFY Y AF+ AA AFP F  +G+   RKRE+AAF AQT H T+       GG Y+WGYCY ++V  A+SD           PG+ Y+ RGP+Q+ +N NY   GEA+G DLL NP+L+ATDP ++FK+A+W WMTA+ P +PS H V+  +W P+  D  AGR PGYGLTTNI+ GG++C   G +   +R+ F+  +C   G   G NLDC    P+   +M+ S
Sbjct:   92 GGRAGVASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCY-KEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQC--AGGNGGADRVAFYKRYCDVLGVGYGPNLDCFGQAPFDGGIMSAS 337          
BLAST of CV998073 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.873e-57
Identity = 113/240 (47.08%), Postives = 148/240 (61.67%), Query Frame = 3
Query:  159 LGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGDQPGDNLDCSQPRPY 878
            +  +IS  +FE +L +R        GFYTYDAFI AA++FP F  +G+  +RKRE+AAF AQT HETTGGW  AP G Y  G         ++SD             Y+GRGPIQ+++N NY   G+A+GVDLL NPDL+ +D  + FK+A+WFWMT Q PKPS H+VI   W PS+ D  AGR+PGYG+ TNII+GG+ECG      V +RIG++            DNLDC   +P+
Sbjct:    1 VSSVISSSLFEKMLLHR--------GFYTYDAFIAAAKSFPAFATTGSTDVRKREVAAFLAQTSHETTGGWPTAPDGPYELG---------STSD-------------YFGRGPIQISYNYNYGAAGKAIGVDLLRNPDLVTSDNTVEFKTALWFWMTPQSPKPSSHDVITGRWSPSSTDKAAGRVPGYGVLTNIIDGGVECGKGQESHVADRIGYYK-----------DNLDCYNQKPF 199          
BLAST of CV998073 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 168.703 bits (426), Expect = 4.191e-41
Identity = 93/245 (37.96%), Postives = 140/245 (57.14%), Query Frame = 3
Query:  132 TGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYG-RGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGND--AVR-NRIGFFTTFCGKFGDQPGDNL 854
            +G+ T       +++  +F+ +  +R D  CP++GFY+Y +F+ AA++FP FG  G+   RKRE+AAF A     T+G  +D     +AWG C+I   +   +D           G+ Y  RGPIQLT N NY   G+A+G DL+ NPDL+  DP++SFK+A+WFWM+    KPSCH++++     +AN   A R+P  G+  NII+        G+D  AVR + IGF+  +C   G   G +L
Sbjct:  121 SGNSTANSIGNVVVTEPLFDQMFSHRKD--CPSQGFYSYHSFLVAAESFPAFGTIGDVATRKREVAAFLAHISQATSGERSDVEN-PHAWGLCHINTTTVTENDFCTSSDWPCAAGKKYSPRGPIQLTHNFNYGLAGQAIGEDLIQNPDLVEKDPIISFKTALWFWMSQHDNKPSCHDIVL-----NANSA-ANRIPNKGVIGNIISRAF-----GHDDFAVRSSSIGFYKRYCDMLGVSYGHDL 351          
BLAST of CV998073 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 5.664e-38
Identity = 90/257 (35.02%), Postives = 127/257 (49.42%), Query Frame = 3
Query:   99 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASS---DXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGDQPGDNLDC 860
            CG+G   G  D    T+   +  I++ E F  L+   +D  C A+GFYT DAF+ AA  +P FG +G+    KREIAAFFA   HET               +CYI ++   S    D             YYGRGP+Q++WN NY   G+++G D L +PD +A  PVL+F++A+W+W        + H+  +                G+G T   ING +EC      AV NR+ ++  FC +FG  PG NL C
Sbjct:   49 CGTGCQAGPCDVP-ATNDVSVASIVTPEFFAALVAQADDG-CAAKGFYTRDAFLTAAGGYPSFGRTGSVDDSKREIAAFFAHANHETIK-------------FCYIEEIDGPSKNYCDETSTQWPCMAGKGYYGRGPLQISWNFNYGPAGQSIGFDGLGDPDAVARSPVLAFQTALWYWTN------NVHDAFVSG-------------QGFGATIRAINGALECDGKNPTAVSNRVAYYQQFCQQFGVDPGSNLTC 271          
BLAST of CV998073 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 2.152e-37
Identity = 99/271 (36.53%), Postives = 128/271 (47.23%), Query Frame = 3
Query:   96 NCGSGVVCGERDT-----------GHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQ----VSPASSDXXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGDQPGDNLDC 860
            NC SG   G   T           G G  G  +  I+S+  F+ ++  +  A CP + FYT  AF+ A    P FGN G+    KREIAAFFA   HETT               C+I +    V  A  D           G+ YYGRGP+QL+WN NY   G+A+G D L NP+ +ATD   SFK+A+WFWMT                     +V++    G+G TT  ING +EC     D   +RI F+  +C  FG  PGDNL C
Sbjct:   55 NCQSGPCEGGTPTTPTTPTTPTTPGTGGGGSSVSDIVSQAFFDGIIG-QAAASCPGKNFYTRAAFLSAVD--PKFGNEGSSDDNKREIAAFFAHISHETTN-------------LCHIEERDGDVGDAYCDQDKAAQYPCAAGKKYYGRGPLQLSWNYNYALAGQAIGFDGLGNPEKVATDVNTSFKAAMWFWMT---------------------NVHSVMNQGFGATTKAINGALECNGQNQDQANDRIQFYKKYCADFGVAPGDNLTC 288          
BLAST of CV998073 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 4.059e-36
Identity = 90/255 (35.29%), Postives = 130/255 (50.98%), Query Frame = 3
Query:   99 CGSGVVCGER-DTGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGDQPGDNLDC 860
            CG G   G   D   G     +  I+++E F D +  +  A CP + FYT   F+EA  A+PGFG    +  RKREIAA+FA   HET           +A  YC   Q  P + +            +Y+GRGP+QL+WN NY+  G+ L  D LN+PD++  DP++SFK+++WFW+     +     VI+D   P+          G+G T  IINGG EC       +  R+G++  +C + G  PG+NL C
Sbjct:   25 CGPGCQAGPCWDPCEGDGTLTVSDIVTQE-FWDGIASQAAANCPGKSFYTRSNFLEAVSAYPGFGTKCTDEDRKREIAAYFAHVTHETGHLCYIEERDGHANNYCQESQQYPCNPNK-----------EYFGRGPMQLSWNYNYIDAGKELHFDGLNDPDIVGRDPIISFKTSLWFWI-----RKGVQYVILD---PN---------QGFGATIRIINGGQECDGHNTAQMMARVGYYQEYCAQLGVSPGNNLPC 250          
BLAST of CV998073 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 1.306e-34
Identity = 88/261 (33.72%), Postives = 133/261 (50.96%), Query Frame = 3
Query:   99 CGSGVVCGERDTGHGTD----GGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXX--LPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGDQPGDNLDC 860
            CG+G   G   +  GT     GG +G I+++  F  ++       C  + FYT D+FI AA  FP F NS    + +REIA  FA   HET               +CYI +++ AS D            PG+ Y+GRGPIQL+WN NY  CG++L ++LL  P+L++++P ++F++ +WFWM +  P       ++++              G+G T   IN G+EC    + AV  RI ++  +CG+ G  PG NL C
Sbjct:   48 CGTGCRSGPCRSPGGTPSPPGGGSVGSIVTQAFFNGIINQAGGG-CAGKNFYTRDSFINAANTFPNFANS----VTRREIATMFAHFTHETGH-------------FCYIEEINGASRDYCDENNRQYPCAPGKGYFGRGPIQLSWNYNYGACGQSLNLNLLGQPELVSSNPTVAFRTGLWFWMNSVRP-------VLNQ--------------GFGATIRAIN-GMECNGGNSGAVNARIRYYRDYCGQLGVDPGPNLSC 268          
The following BLAST results are available for this feature:
BLAST of CV998073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI10_ORYSJ3.405e-6746.80Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI8_POPTR1.637e-6147.06Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHI7_ORYSJ2.792e-6146.48Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI2.792e-6146.48Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHIT_AVESA1.873e-5747.08Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
AGI_URTDI4.191e-4137.96Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHI6_ORYSJ5.664e-3835.02Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIP_BETVU2.152e-3736.53Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHIT_DIOJA4.059e-3635.29Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHI4_BRANA1.306e-3433.72Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_CTMN-3_T3 Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07-153 Citrus sinensis cDNA clone TC03_C01_011, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV998073 ID=CV998073; Name=CV998073; organism=Citrus sinensis; type=EST; length=924bp
ATTGATATCATAACTCTTGCTTTCAAATGAGGCTCATTGGGTCCTTACTA
ATTTTCTCTCTAGTTTTATCTTTTGTACTAGGAGGTTCAGCACAGAATTG
TGGAAGCGGCGTTGTGTGCGGTGAACGTGATACTGGCCACGGGACGGATG
GCGGTGAACTGGGCAAGATCATCTCAAGGGAGATGTTTGAAGACTTGCTT
CCGTATAGAAATGATGCCCGATGCCCTGCCAGAGGCTTCTACACTTATGA
TGCTTTTATAGAGGCAGCCCAAGCTTTTCCAGGCTTTGGTAACTCTGGAA
ATGAAACCATGCGTAAAAGAGAAATTGCTGCCTTTTTTGCCCAAACTGGC
CATGAAACTACTGGGGGATGGACCGATGCACCTGGTGGAGAATATGCTTG
GGGATATTGCTATATTAGGCAAGTTAGCCCTGCGTCGTCCGACTACTGTT
ATCCTTACTGTCCATGTCCCTTGCCAGGGCAATACTATGGCCGAGGTCCA
ATTCAACTCACTTGGAATTGCAATTACTTAAGGTGCGGAGAAGCCTTGGG
GGTGGACTTGTTGAACAATCCAGACCTACTTGCCACTGATCCAGTACTAT
CATTCAAGTCAGCAATCTGGTTCTGGATGACTGCACAGCCACCAAAGCCA
TCGTGCCACGAAGTCATTATCGACGAATGGAAACCATCAGCAAATGACGT
AAACGCCGGCCGGCTTCCGGGATACGGTCTAACCACAAATATAATCAACG
GTGGAATTGAATGTGGCTACGTTGGGAATGACGCTGTACGTAACCGTATT
GGGTTCTTTACCACTTTCTGTGGCAAGTTTGGGGATCAGCCTGGTGACAA
TCTTGATTGCTCCCAACCACGGCCTTATGGGCCTTATCTGATGGCANCAT
CTATGTGATCATCATGATCAACGT
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