EL492530

Overview
NameEL492530
Unique NameEL492530
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length251
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EL492530 vs. ExPASy Swiss-Prot
Match: HOX32_ORYSJ (Homeobox-leucine zipper protein HOX32 OS=Oryza sativa subsp. japonica GN=HOX32 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.879e-22
Identity = 51/75 (68.00%), Postives = 60/75 (80.00%), Query Frame = 2 
Query:   14 SIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALRHLRQISQEVSQPSVTGWGRRPAALRALSQRLSRGF 238
            S+IHIVDH+DL+ WSVPEVLRPLYES  ++AQK T+AALRH+RQI+ E S     G GR+PA LR  SQRLSRGF
Sbjct:  346 SMIHIVDHVDLDAWSVPEVLRPLYESPKILAQKMTIAALRHIRQIAHESSGEMPYGGGRQPAVLRTFSQRLSRGF 420
[Close]
BLAST of EL492530 vs. ExPASy Swiss-Prot
Match: HOX32_ORYSI (Homeobox-leucine zipper protein HOX32 OS=Oryza sativa subsp. indica GN=HOX32 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.879e-22
Identity = 51/75 (68.00%), Postives = 60/75 (80.00%), Query Frame = 2 
Query:   14 SIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALRHLRQISQEVSQPSVTGWGRRPAALRALSQRLSRGF 238
            S+IHIVDH+DL+ WSVPEVLRPLYES  ++AQK T+AALRH+RQI+ E S     G GR+PA LR  SQRLSRGF
Sbjct:  346 SMIHIVDHVDLDAWSVPEVLRPLYESPKILAQKMTIAALRHIRQIAHESSGEMPYGGGRQPAVLRTFSQRLSRGF 420
[Close]
BLAST of EL492530 vs. ExPASy Swiss-Prot
Match: HOX33_ORYSJ (Homeobox-leucine zipper protein HOX33 OS=Oryza sativa subsp. japonica GN=HOX33 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.628e-21
Identity = 49/75 (65.33%), Postives = 59/75 (78.67%), Query Frame = 2 
Query:   14 SIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALRHLRQISQEVSQPSVTGWGRRPAALRALSQRLSRGF 238
            S+I+IVDH+DL+ WSVPEVLRPLYES  ++AQK T+AALRH+RQI+ E S     G GR+PA  R  SQRLSRGF
Sbjct:  343 SMIYIVDHVDLDAWSVPEVLRPLYESPKILAQKMTIAALRHIRQIAHESSGEIPYGAGRQPAVFRTFSQRLSRGF 417
[Close]
BLAST of EL492530 vs. ExPASy Swiss-Prot
Match: HOX33_ORYSI (Homeobox-leucine zipper protein HOX33 OS=Oryza sativa subsp. indica GN=HOX33 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 4.628e-21
Identity = 49/75 (65.33%), Postives = 59/75 (78.67%), Query Frame = 2 
Query:   14 SIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALRHLRQISQEVSQPSVTGWGRRPAALRALSQRLSRGF 238
            S+I+IVDH+DL+ WSVPEVLRPLYES  ++AQK T+AALRH+RQI+ E S     G GR+PA  R  SQRLSRGF
Sbjct:  343 SMIYIVDHVDLDAWSVPEVLRPLYESPKILAQKMTIAALRHIRQIAHESSGEIPYGAGRQPAVFRTFSQRLSRGF 417
[Close]
BLAST of EL492530 vs. ExPASy Swiss-Prot
Match: ATBH9_ARATH (Homeobox-leucine zipper protein ATHB-9 OS=Arabidopsis thaliana GN=ATHB-9 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.044e-21
Identity = 51/75 (68.00%), Postives = 59/75 (78.67%), Query Frame = 2 
Query:   14 SIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALRHLRQISQEVSQPSVTGWGRRPAALRALSQRLSRGF 238
            SIIHIVDH+DL+  SVPEVLRPLYESS ++AQK T+AALRH+RQI+QE S       GR+PA LR  SQRL RGF
Sbjct:  335 SIIHIVDHVDLDVSSVPEVLRPLYESSKILAQKMTVAALRHVRQIAQETSGEVQYSGGRQPAVLRTFSQRLCRGF 409
The following BLAST results are available for this feature:
BLAST of EL492530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
HOX32_ORYSJ1.879e-2268.00Homeobox-leucine zipper protein HOX32 OS=Oryza sat... [more]
HOX32_ORYSI1.879e-2268.00Homeobox-leucine zipper protein HOX32 OS=Oryza sat... [more]
HOX33_ORYSJ4.628e-2165.33Homeobox-leucine zipper protein HOX33 OS=Oryza sat... [more]
HOX33_ORYSI4.628e-2165.33Homeobox-leucine zipper protein HOX33 OS=Oryza sat... [more]
ATBH9_ARATH6.044e-2168.00Homeobox-leucine zipper protein ATHB-9 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionC2461 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC2461, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492530 ID=EL492530; Name=EL492530; organism=Citrus sinensis; type=EST; length=251bp
GACTGCGTAGTGATCCATCATTCATATAGTGGATCATATGGATTTAGAGC
CTTGGAGTGTCCCTGAAGTGTTGCGCCCACTTTATGAGTCGTCAACATTG
ATTGCTCAGAAGACAACAATGGCGGCTTTACGCCATCTAAGGCAGATTTC
TCAAGAAGTTTCACAGCCAAGTGTCACTGGTTGGGGGAGAAGGCCTGCAG
CCCTACGTGCTCTTAGTCAGAGATTGAGCAGGGGCTTTACTCAGGACTCA
T
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