CV998058

Overview
NameCV998058
Unique NameCV998058
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length908
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9654 contig Csv1_Contig9654:440..1347. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV998058 vs. ExPASy Swiss-Prot
Match: HUTH_HALSA (Probable histidine ammonia-lyase OS=Halobacterium salinarium GN=hutH PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.927e-14
Identity = 68/287 (23.69%), Postives = 125/287 (43.55%), Query Frame = 2
Query:   32 GEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLI-----------DVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVN-DFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNH--VQSAEQHNQDVNSLGLISSRKTAE 850
            GE + A EA   A      LQ KEGLAL+NGT + +G+A++ L +A  +   ++   A+  EV            H+++ H GQ  +A  + ++  GS  ++  +    +       QD Y++R  PQ  G   + +     ++  E+NS  DNPL+              R   + GGNF G  + + +     A+A +  +   +   L+N +     L   L+   +  L  G    +   AS  ++L+ L  P  ++  V  A++ +  +++    + R+  E
Sbjct:  169 GERMPAAEALAAADLEPVTLQAKEGLALINGTQLTTGVAALALVDAERVLRSADTAGALTTEVTMSTTASCAPAIHEVRPHDGQAVSARHIRNLTAGSEVLDHHRDCDRV-------QDAYSIRCLPQVHGAVRDALDHLRAAVATELNSATDNPLVFAGDRVGPRASGTDRAAVVSGGNFHGEVLALRLGYAASALAELAAISERRTDRLLNPETQEPHLEPFLA--PDSGLHSGLMIPQYTAASLVNDLRSLGQPTLDNASVSGAQEDHVSMSAGAAYNFREAVE 446          
BLAST of CV998058 vs. ExPASy Swiss-Prot
Match: HUTH_HALS3 (Probable histidine ammonia-lyase OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=hutH PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.927e-14
Identity = 68/287 (23.69%), Postives = 125/287 (43.55%), Query Frame = 2
Query:   32 GEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLI-----------DVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVN-DFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNH--VQSAEQHNQDVNSLGLISSRKTAE 850
            GE + A EA   A      LQ KEGLAL+NGT + +G+A++ L +A  +   ++   A+  EV            H+++ H GQ  +A  + ++  GS  ++  +    +       QD Y++R  PQ  G   + +     ++  E+NS  DNPL+              R   + GGNF G  + + +     A+A +  +   +   L+N +     L   L+   +  L  G    +   AS  ++L+ L  P  ++  V  A++ +  +++    + R+  E
Sbjct:  169 GERMPAAEALAAADLEPVTLQAKEGLALINGTQLTTGVAALALVDAERVLRSADTAGALTTEVTMSTTASCAPAIHEVRPHDGQAVSARHIRNLTAGSEVLDHHRDCDRV-------QDAYSIRCLPQVHGAVRDALDHLRAAVATELNSATDNPLVFAGDRVGPRASGTDRAAVVSGGNFHGEVLALRLGYAASALAELAAISERRTDRLLNPETQEPHLEPFLA--PDSGLHSGLMIPQYTAASLVNDLRSLGQPTLDNASVSGAQEDHVSMSAGAAYNFREAVE 446          
BLAST of CV998058 vs. ExPASy Swiss-Prot
Match: PALY_MALDO (Phenylalanine ammonia-lyase (Fragment) OS=Malus domestica GN=PAL PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.635e-13
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 2
Query:  791 EQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQA 907
            EQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQ+
Sbjct:    3 EQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQS 41          
The following BLAST results are available for this feature:
BLAST of CV998058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 253
Match NameE-valueIdentityDescription
HUTH_HALSA1.927e-1423.69Probable histidine ammonia-lyase OS=Halobacterium ... [more]
HUTH_HALS31.927e-1423.69Probable histidine ammonia-lyase OS=Halobacterium ... [more]
PALY_MALDO3.635e-1397.44Phenylalanine ammonia-lyase (Fragment) OS=Malus do... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_B-1_T3 Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07-153 Citrus sinensis cDNA clone TC25_A04_032, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV998058 ID=CV998058; Name=CV998058; organism=Citrus sinensis; type=EST; length=908bp
CCGGCCCAATTCTAAGGCCACCGGGCCTAATGGAGAGATCATTGATGCCC
AGGAAGCCTCTAAACAAGCGGGTTTCGGGTTCTTTGAGTTGCAGCCTAAG
GAGGGTCTTGCTCTTGTCAATGGCACTGCTGTTGGTTCTGGCCTGGCTTC
TATGGTTCTGTTTGAGGCTAACAACCTTGCTCTGTTATCAGAAATTTTGT
CAGCTATTTTTGCTGAAGTCATGCAAGGCAAACCTGAGTTCACCGATCAC
TTGACACACAAATTGAAGCACCATCCTGGCCAAATTGAGGCTGCTGCTAT
AATGGAACATATCCTCGATGGCAGCTCTTATGTTAACGTGGCTAAGAAGT
TGCATGAGATTGATCCTCTGCAGAAGCCGAAACAGGATCGTTATGCCCTG
AGAACTTCACCACAATGGCTCGGCCCTCAGATCGAAGTGATTCGGTTTGC
AACCAAGTCTATTGAACGGGAGATCAACTCGGTGAATGACAATCCCCTGA
TCGACGTTTCAAGGAACAAGGCCTTACATGGTGGCAATTTTCAGGGGACC
CCAATTGGTGTCTCAATGGACAATACCCGTTTGGCTATTGCGGCAATAGG
GAAGCTCATGTTTGCCCAATTTTCTGAACTTGTCAACGATTTTTACAACA
ATGGATTGCCGTCAAATCTGTCTGGTGGCAGGAATCCTAGCCTGGATTAT
GGTTTCAAGGGCGCTGAAATTGCTATGGCTTCCTATTGTTCGGAGCTCCA
ATTTCTTGCCAATCCTGTTACTAACCACGTCCAAAGTGCTGAACAGCACA
ACCAAGATGTAAACTCCTTGGGATTGATCTCTTCCAGGAAGACTGCTGAA
GCAGTCGACATCCTGAAGCTCATGTCTTCCACATTCTTGGTAGCGCTTTG
CCAGGCTA
back to top