CX674863

Overview
NameCX674863
Unique NameCX674863
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674863 vs. ExPASy Swiss-Prot
Match: YPTM2_MAIZE (GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.358e-41
Identity = 86/207 (41.55%), Postives = 135/207 (65.22%), Query Frame = 1
Query:  169 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVSRKVLNSDSYKAELSLNRVTLVKSETDGSKQTSSYFSCCS 789
            YLFK+++IGDS VGKS LL R+A + +     +TIGV+F+ +++E DGK +K QIWDTAGQERFR +TS+YYRGA G +IVYD+T + +F+++ +WL+E+  ++   V ++LVGNK DL + + V+TE  K+ A+  G+ FMETSA ++TNV+ AF  +   I   ++ +   +++  A + +             +  +   SCCS
Sbjct:    7 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKSDLTANKVVATETAKAFADEMGIPFMETSAKNATNVQQAFMAMAASIKDRMASQPAAANARPATVQIR-----------GQPVNQKTSCCS 202          
BLAST of CX674863 vs. ExPASy Swiss-Prot
Match: RB1BV_BETVU (Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.358e-41
Identity = 87/208 (41.83%), Postives = 137/208 (65.87%), Query Frame = 1
Query:  169 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDL-ESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVSRKVLNSDS-YKAELSLNRVTLVKSETDGSKQTSSYFSCC 786
            YL K+++IGDS VGKS LL R++   F      TIG++F+ +++E+DGK +K QIWDTAGQERFR +T+AYYRGA+G L+VYD+T  ++F++I  W+  ++ H+   V ++LVGNK D+ ES R V T +G++LA+  G+ F ETSA  + NV+  F  + R+I     +++ +SD+  +A+ S+     +K       Q ++  +CC
Sbjct:   14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI----KQRLADSDTRQEAQPSIT----IKPADQSGNQAAAKSACC 213          
BLAST of CX674863 vs. ExPASy Swiss-Prot
Match: YPT1_SCHPO (GTP-binding protein ypt1 OS=Schizosaccharomyces pombe GN=ypt1 PE=1 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 5.692e-41
Identity = 86/206 (41.75%), Postives = 131/206 (63.59%), Query Frame = 1
Query:  169 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVSRKVLNSDSYKAELSLNRVTLVKSETDGSKQTSSYFSCC 786
            YLFK+++IGDS VGKS LL R+A + +     +TIGV+F+ ++ E++GK VK QIWDTAGQERFR +TS+YYRGA G +IVYD+T + +F+++ +WL E+  ++   V R+LVGNK D+   + V     K  A++  + F+ETSA DSTNV+ AF  + R+I   +      S + K+ + + +         G+  + S  +CC
Sbjct:    7 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNKSDMVDKKVVEYSVAKEFADSLNIPFLETSAKDSTNVEQAFLTMSRQIKERMGNNTFASSNAKSSVKVGQ---------GTNVSQSSSNCC 203          
BLAST of CX674863 vs. ExPASy Swiss-Prot
Match: RAB3A_RAT (Ras-related protein Rab-3A OS=Rattus norvegicus GN=Rab3a PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 5.692e-41
Identity = 79/175 (45.14%), Postives = 121/175 (69.14%), Query Frame = 1
Query:  169 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVSRKVLNSD 693
            Y+FKI+IIG+S+VGK++ L RYA + F P   +T+G++F+ +++  + K +K QIWDTAGQER+R +T+AYYRGA+G +++YDIT   +F+++  W  ++KT+S      +LVGNKCD+E  R VS+E G+ LA+  G  F E SA D+ NVK  FE ++  I   +S  +  +D
Sbjct:   21 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTAD 195          
BLAST of CX674863 vs. ExPASy Swiss-Prot
Match: RAB3A_PIG (Ras-related protein Rab-3A OS=Sus scrofa GN=RAB3A PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 5.692e-41
Identity = 79/175 (45.14%), Postives = 121/175 (69.14%), Query Frame = 1
Query:  169 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVSRKVLNSD 693
            Y+FKI+IIG+S+VGK++ L RYA + F P   +T+G++F+ +++  + K +K QIWDTAGQER+R +T+AYYRGA+G +++YDIT   +F+++  W  ++KT+S      +LVGNKCD+E  R VS+E G+ LA+  G  F E SA D+ NVK  FE ++  I   +S  +  +D
Sbjct:   21 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTAD 195          
BLAST of CX674863 vs. ExPASy Swiss-Prot
Match: RAB3A_MOUSE (Ras-related protein Rab-3A OS=Mus musculus GN=Rab3a PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 5.692e-41
Identity = 79/175 (45.14%), Postives = 121/175 (69.14%), Query Frame = 1
Query:  169 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVSRKVLNSD 693
            Y+FKI+IIG+S+VGK++ L RYA + F P   +T+G++F+ +++  + K +K QIWDTAGQER+R +T+AYYRGA+G +++YDIT   +F+++  W  ++KT+S      +LVGNKCD+E  R VS+E G+ LA+  G  F E SA D+ NVK  FE ++  I   +S  +  +D
Sbjct:   21 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTAD 195          
BLAST of CX674863 vs. ExPASy Swiss-Prot
Match: RAB3A_MACFA (Ras-related protein Rab-3A OS=Macaca fascicularis GN=RAB3A PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 5.692e-41
Identity = 79/175 (45.14%), Postives = 121/175 (69.14%), Query Frame = 1
Query:  169 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVSRKVLNSD 693
            Y+FKI+IIG+S+VGK++ L RYA + F P   +T+G++F+ +++  + K +K QIWDTAGQER+R +T+AYYRGA+G +++YDIT   +F+++  W  ++KT+S      +LVGNKCD+E  R VS+E G+ LA+  G  F E SA D+ NVK  FE ++  I   +S  +  +D
Sbjct:   21 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTAD 195          
BLAST of CX674863 vs. ExPASy Swiss-Prot
Match: RAB3A_HUMAN (Ras-related protein Rab-3A OS=Homo sapiens GN=RAB3A PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 5.692e-41
Identity = 79/175 (45.14%), Postives = 121/175 (69.14%), Query Frame = 1
Query:  169 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVSRKVLNSD 693
            Y+FKI+IIG+S+VGK++ L RYA + F P   +T+G++F+ +++  + K +K QIWDTAGQER+R +T+AYYRGA+G +++YDIT   +F+++  W  ++KT+S      +LVGNKCD+E  R VS+E G+ LA+  G  F E SA D+ NVK  FE ++  I   +S  +  +D
Sbjct:   21 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTAD 195          
BLAST of CX674863 vs. ExPASy Swiss-Prot
Match: RAB3A_BOVIN (Ras-related protein Rab-3A OS=Bos taurus GN=RAB3A PE=1 SV=3)

HSP 1 Score: 167.933 bits (424), Expect = 5.692e-41
Identity = 79/175 (45.14%), Postives = 121/175 (69.14%), Query Frame = 1
Query:  169 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVSRKVLNSD 693
            Y+FKI+IIG+S+VGK++ L RYA + F P   +T+G++F+ +++  + K +K QIWDTAGQER+R +T+AYYRGA+G +++YDIT   +F+++  W  ++KT+S      +LVGNKCD+E  R VS+E G+ LA+  G  F E SA D+ NVK  FE ++  I   +S  +  +D
Sbjct:   21 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTAD 195          
BLAST of CX674863 vs. ExPASy Swiss-Prot
Match: RAB1A_RAT (Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 167.933 bits (424), Expect = 5.692e-41
Identity = 80/191 (41.88%), Postives = 128/191 (67.02%), Query Frame = 1
Query:  169 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVSRKVLNSDSYKAELSLNRVTLVKS 741
            YLFK+++IGDS VGKS LL R+A + +     +TIGV+F+ +++E+DGK +K QIWDTAGQERFR +TS+YYRGA G ++VYD+T + +F+++ +WL E+  ++   V ++LVGNKCDL + + V     K  A++ G+ F+ETSA ++TNV+ +F  +  EI   +        + K+ + +    + +S
Sbjct:   10 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQS 200          
The following BLAST results are available for this feature:
BLAST of CX674863 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YPTM2_MAIZE4.358e-4141.55GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=... [more]
RB1BV_BETVU4.358e-4141.83Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB... [more]
YPT1_SCHPO5.692e-4141.75GTP-binding protein ypt1 OS=Schizosaccharomyces po... [more]
RAB3A_RAT5.692e-4145.14Ras-related protein Rab-3A OS=Rattus norvegicus GN... [more]
RAB3A_PIG5.692e-4145.14Ras-related protein Rab-3A OS=Sus scrofa GN=RAB3A ... [more]
RAB3A_MOUSE5.692e-4145.14Ras-related protein Rab-3A OS=Mus musculus GN=Rab3... [more]
RAB3A_MACFA5.692e-4145.14Ras-related protein Rab-3A OS=Macaca fascicularis ... [more]
RAB3A_HUMAN5.692e-4145.14Ras-related protein Rab-3A OS=Homo sapiens GN=RAB3... [more]
RAB3A_BOVIN5.692e-4145.14Ras-related protein Rab-3A OS=Bos taurus GN=RAB3A ... [more]
RAB1A_RAT5.692e-4141.88Ras-related protein Rab-1A OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_9B08_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-9B08-C15-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674863 ID=CX674863; Name=CX674863; organism=Citrus sinensis; type=EST; length=797bp
CGCAGTATGTCTGTGCCAGCTTGACACCAGTCGCAGCACCACCACCATTA
TTGTTATTTATTTATTTTTTTTATTTTTTTTCCTTTTAGCTTCCAGTTTC
CATTCAAGGGAATTCAATTCAAAACGATGTCGTCGTCGGATGAAGAAGGA
GGAGGAGGAGGGGAGGAGTACTTGTTCAAGATCGTGATAATCGGCGACTC
GGCGGTGGGGAAATCGAACCTACTGTCTCGTTACGCTCGGAACGAGTTCA
ATCCTCACTCGAAGGCGACAATTGGAGTCGAGTTTCAAACGCAGAGCATG
GAGATCGACGGCAAGGAAGTCAAGGCTCAGATTTGGGACACCGCCGGCCA
GGAGCGCTTCCGCGCCGTCACTTCTGCTTACTACAGAGGCGCCGTCGGTG
CTCTCATTGTTTACGACATTACCAGGCGTACCACTTTTGACAGCATCTCT
CGCTGGCTCGATGAGCTCAAGACTCATTCTGATACCACTGTGGCAAGGAT
GCTGGTCGGGAACAAATGTGATTTGGAGAGTATCCGGAATGTGAGCACTG
AAGAAGGCAAAAGCCTTGCAGAAGCAGAAGGGTTGTTTTTCATGGAAACT
TCTGCATTGGACTCGACGAATGTTAAAAATGCTTTTGAGATTGTCATCCG
AGAGATTTACAGCAATGTCAGCAGGAAGGTCCTGAATTCAGATAGTTACA
AAGCTGAATTATCTCTCAACCGGGTAACCCTCGTAAAATCTGAAACCGAT
GGATCAAAGCAAACATCCAGTTATTTTTCTTGCTGTTCAAGGTGACC
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