CX674863

Overview
NameCX674863
Unique NameCX674863
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674863 vs. ExPASy Swiss-Prot
Match: RAB1A_MOUSE (Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 167.933 bits (424), Expect = 5.692e-41
Identity = 80/191 (41.88%), Postives = 128/191 (67.02%), Query Frame = 1
Query:  169 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVSRKVLNSDSYKAELSLNRVTLVKS 741
            YLFK+++IGDS VGKS LL R+A + +     +TIGV+F+ +++E+DGK +K QIWDTAGQERFR +TS+YYRGA G ++VYD+T + +F+++ +WL E+  ++   V ++LVGNKCDL + + V     K  A++ G+ F+ETSA ++TNV+ +F  +  EI   +        + K+ + +    + +S
Sbjct:   10 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQS 200          
BLAST of CX674863 vs. ExPASy Swiss-Prot
Match: RAB1A_HUMAN (Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3)

HSP 1 Score: 167.933 bits (424), Expect = 5.692e-41
Identity = 80/191 (41.88%), Postives = 128/191 (67.02%), Query Frame = 1
Query:  169 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVSRKVLNSDSYKAELSLNRVTLVKS 741
            YLFK+++IGDS VGKS LL R+A + +     +TIGV+F+ +++E+DGK +K QIWDTAGQERFR +TS+YYRGA G ++VYD+T + +F+++ +WL E+  ++   V ++LVGNKCDL + + V     K  A++ G+ F+ETSA ++TNV+ +F  +  EI   +        + K+ + +    + +S
Sbjct:   10 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQS 200          
BLAST of CX674863 vs. ExPASy Swiss-Prot
Match: RAB1A_CANFA (Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3)

HSP 1 Score: 167.933 bits (424), Expect = 5.692e-41
Identity = 80/191 (41.88%), Postives = 128/191 (67.02%), Query Frame = 1
Query:  169 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVSRKVLNSDSYKAELSLNRVTLVKS 741
            YLFK+++IGDS VGKS LL R+A + +     +TIGV+F+ +++E+DGK +K QIWDTAGQERFR +TS+YYRGA G ++VYD+T + +F+++ +WL E+  ++   V ++LVGNKCDL + + V     K  A++ G+ F+ETSA ++TNV+ +F  +  EI   +        + K+ + +    + +S
Sbjct:   10 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQS 200          
BLAST of CX674863 vs. ExPASy Swiss-Prot
Match: RAB1A_PIG (Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3)

HSP 1 Score: 167.548 bits (423), Expect = 7.434e-41
Identity = 80/191 (41.88%), Postives = 128/191 (67.02%), Query Frame = 1
Query:  169 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVSRKVLNSDSYKAELSLNRVTLVKS 741
            YLFK+++IGDS VGKS LL R+A + +     +TIGV+F+ +++E+DGK +K QIWDTAGQERFR +TS+YYRGA G ++VYD+T + +F+++ +WL E+  ++   V ++LVGNKCDL + + V     K  A++ G+ F+ETSA ++TNV+ +F  +  EI   +        + K+ + +    + +S
Sbjct:   10 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQGSFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQS 200          
BLAST of CX674863 vs. ExPASy Swiss-Prot
Match: YPTC1_CHLRE (GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1 PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.163e-40
Identity = 79/168 (47.02%), Postives = 122/168 (72.62%), Query Frame = 1
Query:  169 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVS 672
            YLFK+++IGDS VGKS LL R+A + +     +TIGV+F+ +++E+DGK +K QIWDTAGQERFR +TS+YYRGA G ++VYD+T + +F+++ +WL+E+  ++   V ++LVGNK DL S + V     K+ A+  G+ F+ETSA ++TNV+ AF  +  EI + ++
Sbjct:    7 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKSDLTSKKVVEYSVAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMA 174          
BLAST of CX674863 vs. ExPASy Swiss-Prot
Match: RAB10_PONAB (Ras-related protein Rab-10 OS=Pongo abelii GN=RAB10 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.825e-40
Identity = 77/175 (44.00%), Postives = 122/175 (69.71%), Query Frame = 1
Query:  172 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVSRKVLNSDS 696
            LFK+++IGDS VGK+ +L R++ + FN    +TIG++F+ +++E+ GK++K QIWDTAGQERF  +T++YYRGA+G ++VYDIT   +F++IS+WL  +  H++  V RML+GNKCD++  R V   +G+ +A   G+ F ETSA  + N++ AF  +  +I      K  NS++
Sbjct:    9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSEN 183          
BLAST of CX674863 vs. ExPASy Swiss-Prot
Match: RAB10_MOUSE (Ras-related protein Rab-10 OS=Mus musculus GN=Rab10 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.825e-40
Identity = 77/175 (44.00%), Postives = 122/175 (69.71%), Query Frame = 1
Query:  172 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVSRKVLNSDS 696
            LFK+++IGDS VGK+ +L R++ + FN    +TIG++F+ +++E+ GK++K QIWDTAGQERF  +T++YYRGA+G ++VYDIT   +F++IS+WL  +  H++  V RML+GNKCD++  R V   +G+ +A   G+ F ETSA  + N++ AF  +  +I      K  NS++
Sbjct:    9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSEN 183          
BLAST of CX674863 vs. ExPASy Swiss-Prot
Match: RAB10_HUMAN (Ras-related protein Rab-10 OS=Homo sapiens GN=RAB10 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.825e-40
Identity = 77/175 (44.00%), Postives = 122/175 (69.71%), Query Frame = 1
Query:  172 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVSRKVLNSDS 696
            LFK+++IGDS VGK+ +L R++ + FN    +TIG++F+ +++E+ GK++K QIWDTAGQERF  +T++YYRGA+G ++VYDIT   +F++IS+WL  +  H++  V RML+GNKCD++  R V   +G+ +A   G+ F ETSA  + N++ AF  +  +I      K  NS++
Sbjct:    9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSEN 183          
BLAST of CX674863 vs. ExPASy Swiss-Prot
Match: RAB1_THEPA (Ras-related protein Rab-1 OS=Theileria parva GN=rab1 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.689e-40
Identity = 82/204 (40.20%), Postives = 132/204 (64.71%), Query Frame = 1
Query:  169 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISR-WLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVSRKVLNSDSYKAEL-SLNRVTLVKSETDGSKQTSSY 774
            YLFKI++IGDS  GKS+LL R+A N ++    +TIGV+F+ ++++ID   +K QIWDTAGQERFR +TS YYRGA G + VYD+T + +FD I+  WL ++  ++ + V ++L+GNK DL   R VS +E K +AE   + ++E SA   +NV+ AF  + + +   V++   N+ +    L + ++V   +  TD  +++S +
Sbjct:    6 YLFKIIVIGDSGTGKSSLLLRFADNTYSESYMSTIGVDFKIKTVKIDNTTIKLQIWDTAGQERFRTITSTYYRGAHGIICVYDVTNKLSFDHITETWLQDIDKYATSNVCKLLIGNKIDLAESRVVSADEAKHVAEQNNMNYIEASAKTDSNVEKAFTTIAKALKDKVTQYPSNAPASTVSLNTASKVPTNRGLTDSCQESSVF 209          
BLAST of CX674863 vs. ExPASy Swiss-Prot
Match: RAB10_CHICK (Ras-related protein Rab-10 OS=Gallus gallus GN=RAB10 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.689e-40
Identity = 77/175 (44.00%), Postives = 121/175 (69.14%), Query Frame = 1
Query:  172 LFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVSRKVLNSDS 696
            LFK+++IGDS VGK+ +L R++ + FN    +TIG++ + +++E+ GK++K QIWDTAGQERF  +T++YYRGA+G ++VYDIT   +F++IS+WL  +  H++  V RML+GNKCD+E  R V   +G+ +A   G+ F ETSA  + N++ AF  +  +I      K  NS++
Sbjct:    9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDLKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDVERMLLGNKCDMEDKRVVPKAKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSEN 183          
The following BLAST results are available for this feature:
BLAST of CX674863 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB1A_MOUSE5.692e-4141.88Ras-related protein Rab-1A OS=Mus musculus GN=Rab1... [more]
RAB1A_HUMAN5.692e-4141.88Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1... [more]
RAB1A_CANFA5.692e-4141.88Ras-related protein Rab-1A OS=Canis familiaris GN=... [more]
RAB1A_PIG7.434e-4141.88Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A ... [more]
YPTC1_CHLRE2.163e-4047.02GTP-binding protein YPTC1 OS=Chlamydomonas reinhar... [more]
RAB10_PONAB2.825e-4044.00Ras-related protein Rab-10 OS=Pongo abelii GN=RAB1... [more]
RAB10_MOUSE2.825e-4044.00Ras-related protein Rab-10 OS=Mus musculus GN=Rab1... [more]
RAB10_HUMAN2.825e-4044.00Ras-related protein Rab-10 OS=Homo sapiens GN=RAB1... [more]
RAB1_THEPA3.689e-4040.20Ras-related protein Rab-1 OS=Theileria parva GN=ra... [more]
RAB10_CHICK3.689e-4044.00Ras-related protein Rab-10 OS=Gallus gallus GN=RAB... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_9B08_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-9B08-C15-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674863 ID=CX674863; Name=CX674863; organism=Citrus sinensis; type=EST; length=797bp
CGCAGTATGTCTGTGCCAGCTTGACACCAGTCGCAGCACCACCACCATTA
TTGTTATTTATTTATTTTTTTTATTTTTTTTCCTTTTAGCTTCCAGTTTC
CATTCAAGGGAATTCAATTCAAAACGATGTCGTCGTCGGATGAAGAAGGA
GGAGGAGGAGGGGAGGAGTACTTGTTCAAGATCGTGATAATCGGCGACTC
GGCGGTGGGGAAATCGAACCTACTGTCTCGTTACGCTCGGAACGAGTTCA
ATCCTCACTCGAAGGCGACAATTGGAGTCGAGTTTCAAACGCAGAGCATG
GAGATCGACGGCAAGGAAGTCAAGGCTCAGATTTGGGACACCGCCGGCCA
GGAGCGCTTCCGCGCCGTCACTTCTGCTTACTACAGAGGCGCCGTCGGTG
CTCTCATTGTTTACGACATTACCAGGCGTACCACTTTTGACAGCATCTCT
CGCTGGCTCGATGAGCTCAAGACTCATTCTGATACCACTGTGGCAAGGAT
GCTGGTCGGGAACAAATGTGATTTGGAGAGTATCCGGAATGTGAGCACTG
AAGAAGGCAAAAGCCTTGCAGAAGCAGAAGGGTTGTTTTTCATGGAAACT
TCTGCATTGGACTCGACGAATGTTAAAAATGCTTTTGAGATTGTCATCCG
AGAGATTTACAGCAATGTCAGCAGGAAGGTCCTGAATTCAGATAGTTACA
AAGCTGAATTATCTCTCAACCGGGTAACCCTCGTAAAATCTGAAACCGAT
GGATCAAAGCAAACATCCAGTTATTTTTCTTGCTGTTCAAGGTGACC
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