CX674863

Overview
NameCX674863
Unique NameCX674863
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674863 vs. ExPASy Swiss-Prot
Match: RB11C_DICDI (Ras-related protein Rab-11C OS=Dictyostelium discoideum GN=rab11C PE=1 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 7.657e-54
Identity = 104/170 (61.18%), Postives = 134/170 (78.82%), Query Frame = 1
Query:  169 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVSRK 678
            YLFKIVIIGDSAVGKSNLL+R+ RNEF   +KATIGV+F T+S+EID K + AQ WDTAGQERFRAVTS YYRGAVGA+IVYDIT + +F +++RWL+EL+  ++  +  M+VGNK DLE  R V T+E ++ AE+  + F+ETSAL+STNV  +FE ++ +IY  VS K
Sbjct:    9 YLFKIVIIGDSAVGKSNLLNRFTRNEFTEKTKATIGVDFGTKSIEIDNKTITAQCWDTAGQERFRAVTSGYYRGAVGAMIVYDITSKISFKNVTRWLNELREMAEQDILIMMVGNKSDLEMSREVPTKEAQAFAESNKISFLETSALNSTNVNQSFERLLTDIYHLVSSK 178          
BLAST of CX674863 vs. ExPASy Swiss-Prot
Match: RAB25_MOUSE (Ras-related protein Rab-25 OS=Mus musculus GN=Rab25 PE=1 SV=2)

HSP 1 Score: 207.608 bits (527), Expect = 6.482e-53
Identity = 105/206 (50.97%), Postives = 142/206 (68.93%), Query Frame = 1
Query:  169 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVSRKVLNSDSYKAELSLNRVTLVKSETDGSKQTSSYFSCC 786
            ++FK+V+IG+S VGK+NLLSR+ RNEF+  S+ TIGVEF T+++ +    VKAQIWDTAG ER+RA+TSAYYRGAVGAL+V+D+T+  T+  + RWL EL  H++ T+  MLVGNK DL   R V TEE    AE  GL F+ETSALDSTNV+ AF+ V++EI++ VS++  NS    A      +TL  ++           +CC
Sbjct:   11 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEACMFAENNGLLFLETSALDSTNVELAFQTVLKEIFAKVSKQKQNSTRTSA------ITLGNAQAGQDPGPGEKRACC 210          
BLAST of CX674863 vs. ExPASy Swiss-Prot
Match: RAB25_BOVIN (Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 6.482e-53
Identity = 99/174 (56.90%), Postives = 134/174 (77.01%), Query Frame = 1
Query:  169 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVSRKVLNS 690
            ++FK+V+IG+S VGK+NLLSR+ RNEF+  S+ TIGVEF T+++ +    +KAQIWDTAG ER+RA+TSAYYRGAVGAL+V+D+T+  T+  + RWL EL  H++ T+  MLVGNK DL   R V TEE +  AE  GL F+ETSALDSTNV+ AFE V++EI++ VS++  N+
Sbjct:   11 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAIKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQSREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQRQNN 184          
BLAST of CX674863 vs. ExPASy Swiss-Prot
Match: YPT32_YEAST (GTP-binding protein YPT32/YPT11 OS=Saccharomyces cerevisiae GN=YPT32 PE=1 SV=3)

HSP 1 Score: 200.29 bits (508), Expect = 1.035e-50
Identity = 107/213 (50.23%), Postives = 149/213 (69.95%), Query Frame = 1
Query:  169 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVSRKVLN-SDSYKAELSLN------RVTLVKSETDGSKQTSSYFSCC 786
            YLFKIV+IGDS VGKSNLLSR+  +EFN  SK+TIGVEF T+++E++ K++KAQIWDTAGQER+RA+TSAYYRGAVGALIVYDI++ +++++ + WL EL+ ++D  VA  L+GNK DL  +R V T+E K+ A    + F ETSAL+S NV  AF  +I  I+  VS+  ++ S S    +  N       ++L  +  +  K+ SS  +CC
Sbjct:   12 YLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVSKHQVDLSGSGTNNMGSNGAPKGPTISLTPAPKEDKKKKSS--NCC 222          
BLAST of CX674863 vs. ExPASy Swiss-Prot
Match: RAB8B_PONAB (Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8B PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.818e-48
Identity = 97/205 (47.32%), Postives = 144/205 (70.24%), Query Frame = 1
Query:  169 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVSRKVLNSDSYKAELSLNRVTLVKSETDGSKQTSSYFSC 783
            YLFK+++IGDS VGK+ LL R++ + FN    +TIG++F+ +++E+DGK++K QIWDTAGQERFR +T+AYYRGA+G ++VYDIT   +FD+I  W+  ++ H+ + V RM++GNKCD+   R VS E G+ LA   G+ F+ETSA  STNV+ AF  + R+I + ++RK+ +S+S  A         VK   + SK+T S+F C
Sbjct:    7 YLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRKMNDSNSAGAG------GPVKITENRSKKT-SFFRC 204          
BLAST of CX674863 vs. ExPASy Swiss-Prot
Match: RAB8B_RAT (Ras-related protein Rab-8B OS=Rattus norvegicus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.681e-48
Identity = 97/205 (47.32%), Postives = 143/205 (69.76%), Query Frame = 1
Query:  169 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVSRKVLNSDSYKAELSLNRVTLVKSETDGSKQTSSYFSC 783
            YLFK+++IGDS VGK+ LL R++ + FN    +TIG++F+ +++E+DGK++K QIWDTAGQERFR +T+AYYRGA+G ++VYDIT   +FD+I  W+  ++ H+ + V RM++GNKCD+   R VS E G+ LA   G+ F+ETSA  STNV+ AF  + R+I + ++RK+ +S+S  A         VK     SK+T S+F C
Sbjct:    7 YLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRKMNDSNSSGAG------GPVKITESRSKKT-SFFRC 204          
BLAST of CX674863 vs. ExPASy Swiss-Prot
Match: RAB8B_MOUSE (Ras-related protein Rab-8B OS=Mus musculus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.681e-48
Identity = 97/205 (47.32%), Postives = 143/205 (69.76%), Query Frame = 1
Query:  169 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVSRKVLNSDSYKAELSLNRVTLVKSETDGSKQTSSYFSC 783
            YLFK+++IGDS VGK+ LL R++ + FN    +TIG++F+ +++E+DGK++K QIWDTAGQERFR +T+AYYRGA+G ++VYDIT   +FD+I  W+  ++ H+ + V RM++GNKCD+   R VS E G+ LA   G+ F+ETSA  STNV+ AF  + R+I + ++RK+ +S+S  A         VK     SK+T S+F C
Sbjct:    7 YLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRKMNDSNSSGAG------GPVKITESRSKKT-SFFRC 204          
BLAST of CX674863 vs. ExPASy Swiss-Prot
Match: RAB8B_HUMAN (Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 1.071e-47
Identity = 96/205 (46.83%), Postives = 143/205 (69.76%), Query Frame = 1
Query:  169 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVSRKVLNSDSYKAELSLNRVTLVKSETDGSKQTSSYFSC 783
            YLFK+++IGDS VGK+ LL R++ + FN    +TIG++F+ +++E+DGK++K QIWDTAGQERFR +T+AYYRGA+G ++VYDIT   +FD+I  W+  ++ H+ + V RM++GNKCD+   R VS E G+ LA   G+ F+ETSA  S NV+ AF  + R+I + ++RK+ +S+S  A         VK   + SK+T S+F C
Sbjct:    7 YLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLNRKMNDSNSAGAG------GPVKITENRSKKT-SFFRC 204          
BLAST of CX674863 vs. ExPASy Swiss-Prot
Match: RAB2A_MOUSE (Ras-related protein Rab-2A OS=Mus musculus GN=Rab2a PE=1 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.399e-47
Identity = 94/198 (47.47%), Postives = 130/198 (65.66%), Query Frame = 1
Query:  169 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVSRKVLNSDSYKAELSLNRVTLVKSETDGSKQ 762
            YLFK +IIGD+ VGKS LL ++    F P    TIGVEF  + + IDGK++K QIWDTAGQE FR++T +YYRGA GAL+VYDITRR TF+ ++ WL++ + HS++ +  ML+GNK DLES R V  EEG++ A   GL FMETSA  ++NV+ AF    +EIY  +   V + ++    + +       + + GS Q
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIGPQHAATNASHGSNQ 202          
BLAST of CX674863 vs. ExPASy Swiss-Prot
Match: RAB2A_RABIT (Ras-related protein Rab-2A OS=Oryctolagus cuniculus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 4.070e-47
Identity = 91/173 (52.60%), Postives = 121/173 (69.94%), Query Frame = 1
Query:  169 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVSRKVLN 687
            YLFK +IIGD+ VGKS LL ++    F P    TIGVEF  + + IDGK++K QIWDTAGQE FR++T +YYRGA GAL+VYDITRR TF+ ++ WL++ + HS++ +  ML+GNK DLES R V  EEG++ A   GL FMETSA  ++NV+ AF    +EIY  +   V +
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFD 177          
The following BLAST results are available for this feature:
BLAST of CX674863 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11C_DICDI7.657e-5461.18Ras-related protein Rab-11C OS=Dictyostelium disco... [more]
RAB25_MOUSE6.482e-5350.97Ras-related protein Rab-25 OS=Mus musculus GN=Rab2... [more]
RAB25_BOVIN6.482e-5356.90Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 ... [more]
YPT32_YEAST1.035e-5050.23GTP-binding protein YPT32/YPT11 OS=Saccharomyces c... [more]
RAB8B_PONAB2.818e-4847.32Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8... [more]
RAB8B_RAT3.681e-4847.32Ras-related protein Rab-8B OS=Rattus norvegicus GN... [more]
RAB8B_MOUSE3.681e-4847.32Ras-related protein Rab-8B OS=Mus musculus GN=Rab8... [more]
RAB8B_HUMAN1.071e-4746.83Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8... [more]
RAB2A_MOUSE1.399e-4747.47Ras-related protein Rab-2A OS=Mus musculus GN=Rab2... [more]
RAB2A_RABIT4.070e-4752.60Ras-related protein Rab-2A OS=Oryctolagus cuniculu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_9B08_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-9B08-C15-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674863 ID=CX674863; Name=CX674863; organism=Citrus sinensis; type=EST; length=797bp
CGCAGTATGTCTGTGCCAGCTTGACACCAGTCGCAGCACCACCACCATTA
TTGTTATTTATTTATTTTTTTTATTTTTTTTCCTTTTAGCTTCCAGTTTC
CATTCAAGGGAATTCAATTCAAAACGATGTCGTCGTCGGATGAAGAAGGA
GGAGGAGGAGGGGAGGAGTACTTGTTCAAGATCGTGATAATCGGCGACTC
GGCGGTGGGGAAATCGAACCTACTGTCTCGTTACGCTCGGAACGAGTTCA
ATCCTCACTCGAAGGCGACAATTGGAGTCGAGTTTCAAACGCAGAGCATG
GAGATCGACGGCAAGGAAGTCAAGGCTCAGATTTGGGACACCGCCGGCCA
GGAGCGCTTCCGCGCCGTCACTTCTGCTTACTACAGAGGCGCCGTCGGTG
CTCTCATTGTTTACGACATTACCAGGCGTACCACTTTTGACAGCATCTCT
CGCTGGCTCGATGAGCTCAAGACTCATTCTGATACCACTGTGGCAAGGAT
GCTGGTCGGGAACAAATGTGATTTGGAGAGTATCCGGAATGTGAGCACTG
AAGAAGGCAAAAGCCTTGCAGAAGCAGAAGGGTTGTTTTTCATGGAAACT
TCTGCATTGGACTCGACGAATGTTAAAAATGCTTTTGAGATTGTCATCCG
AGAGATTTACAGCAATGTCAGCAGGAAGGTCCTGAATTCAGATAGTTACA
AAGCTGAATTATCTCTCAACCGGGTAACCCTCGTAAAATCTGAAACCGAT
GGATCAAAGCAAACATCCAGTTATTTTTCTTGCTGTTCAAGGTGACC
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