CX674863

Overview
NameCX674863
Unique NameCX674863
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674863 vs. ExPASy Swiss-Prot
Match: RAB8A_RAT (Ras-related protein Rab-8A OS=Rattus norvegicus GN=Rab8a PE=2 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 3.809e-45
Identity = 90/205 (43.90%), Postives = 137/205 (66.83%), Query Frame = 1
Query:  169 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVSRKVLNSDSYKAELSLNRVTLVKSETDGSKQTSSYFSC 783
            YLFK+++IGDS VGK+ +L R++ + FN    +TIG++F+ +++E+DGK +K QIWDTAGQERFR +T+AYYRGA+G ++VYDIT   +FD+I  W+  ++ H+   V +M++GNKCD+   R VS E G+ LA   G+ FMETSA  + NV+NAF  + R+I + + +K+  +    +         VK   +  K+T S+F C
Sbjct:    7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSSHG------VKITVEQQKRT-SFFRC 204          
BLAST of CX674863 vs. ExPASy Swiss-Prot
Match: RAB8A_MOUSE (Ras-related protein Rab-8A OS=Mus musculus GN=Rab8a PE=1 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 3.809e-45
Identity = 90/205 (43.90%), Postives = 137/205 (66.83%), Query Frame = 1
Query:  169 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVSRKVLNSDSYKAELSLNRVTLVKSETDGSKQTSSYFSC 783
            YLFK+++IGDS VGK+ +L R++ + FN    +TIG++F+ +++E+DGK +K QIWDTAGQERFR +T+AYYRGA+G ++VYDIT   +FD+I  W+  ++ H+   V +M++GNKCD+   R VS E G+ LA   G+ FMETSA  + NV+NAF  + R+I + + +K+  +    +         VK   +  K+T S+F C
Sbjct:    7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSSHG------VKITVEQQKRT-SFFRC 204          
BLAST of CX674863 vs. ExPASy Swiss-Prot
Match: RAB8A_CHICK (Ras-related protein Rab-8A OS=Gallus gallus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 6.497e-45
Identity = 89/205 (43.41%), Postives = 137/205 (66.83%), Query Frame = 1
Query:  169 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVSRKVLNSDSYKAELSLNRVTLVKSETDGSKQTSSYFSC 783
            YLFK+++IGDS VGK+  L R++ + FN    +TIG++F+ +++E+DGK +K QIWDTAGQERFR +T+AYYRGA+G ++VYDIT   +F++I  W+  ++ H+   V +M++GNKCD    R VS E+G+ LA + G+ FMETSA  + N++NAF  + R+I + + +K+  +    +         VK   D  K+ SS+F C
Sbjct:    7 YLFKLLLIGDSGVGKTCALFRFSEDAFNATFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFENIRNWVRNIEEHASPDVEKMILGNKCDANDKRQVSREQGEKLAASFGIKFMETSAKANINIENAFFTLARDIKAKMDKKLEGNSPQGSNQG------VKITPDQQKK-SSFFRC 204          
BLAST of CX674863 vs. ExPASy Swiss-Prot
Match: RAB2B_DICDI (Ras-related protein Rab-2B OS=Dictyostelium discoideum GN=rab2B PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 8.486e-45
Identity = 88/157 (56.05%), Postives = 115/157 (73.25%), Query Frame = 1
Query:  169 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFE 639
            +LFK +++GDSAVGKSNLL ++    F P+S  TIGVEF ++S+ I+ K++K QIWDTAGQE+FR++T AYYRGAV A+IVYDITRR +F+S++ WL + +  S   V  +L+GNK DLE+ R VST E K  AE  GL F ETSA  + NV  AFE
Sbjct:   23 HLFKYIMVGDSAVGKSNLLLQFVDKRFAPNSDFTIGVEFGSRSININDKQIKLQIWDTAGQEKFRSITRAYYRGAVCAMIVYDITRRDSFESLNSWLTDCRKFSSCDVTTVLIGNKADLEANRQVSTSEAKEFAEKNGLMFFETSAKTALNVDEAFE 179          
BLAST of CX674863 vs. ExPASy Swiss-Prot
Match: RAB2B_MAIZE (Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.108e-44
Identity = 96/210 (45.71%), Postives = 132/210 (62.86%), Query Frame = 1
Query:  169 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVSRKV--LNSDSYKAELSLNRVTLVKSETDGSKQTSSY-FSCCS 789
            YLFK +IIGD+ VGKS LL ++    F P    TIGVEF  + + ID K +K QIWDTAGQE FR++T +YYRGA GAL+VYDITRR TF+ ++ WL++ + H++  +  MLVGNKCDL   R VS EEG+  A+  GL FME SA  + NV+ AF      IY  +   V  ++++SY  ++       +  ++ G+  +SS    CCS
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQDGVFDVSNESYGIKVGY----AIPGQSGGAGSSSSQGGGCCS 210          
BLAST of CX674863 vs. ExPASy Swiss-Prot
Match: RAB2A_DICDI (Ras-related protein Rab-2A OS=Dictyostelium discoideum GN=rab2A PE=2 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 3.225e-44
Identity = 90/206 (43.69%), Postives = 133/206 (64.56%), Query Frame = 1
Query:  169 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVSRKVLNSDSYKAELSLNRVTLVKSETDGSKQTSSYFSCC 786
            +LFK +IIGD+ VGKS LL ++    F P    TIGVEF  + + ID K +K QIWDTAGQE FR++T +YYRG+ GAL+VYDITRR TF+ ++ WL + ++++++ +  +L+GNK D+ES R VS EEG+  A+  GL F+ETSA  ++NV+ AF     +IY  + +   + ++    + L   T   S+ DG+ Q  +   CC
Sbjct:    4 FLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKAIKLQIWDTAGQESFRSITRSYYRGSAGALLVYDITRRDTFNHLTCWLKDARSYANSNMTIILIGNKSDMESKRAVSYEEGRQFADENGLIFLETSAKTASNVEEAFVNTASKIYEKIQKGDFDINNESFGIKLGAPT---SKQDGTDQKPAGGGCC 206          
BLAST of CX674863 vs. ExPASy Swiss-Prot
Match: RIC1_ORYSJ (Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 4.211e-44
Identity = 91/207 (43.96%), Postives = 137/207 (66.18%), Query Frame = 1
Query:  169 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVSRKVLNSDSYKAELSLNRVTLVKSETDGSKQTSSYFSCCS 789
            YLFK+++IGDS VGKS LL R+A + +     +TIGV+F+ +++E DGK +K QIWDTAGQERFR +TS+YYRGA G ++VYD+T + +F+++ +WL+E+  ++   V ++LVGNKCDL   R VS E GK+LA+  G+ F+ETSA D+TNV+ AF  +  EI + ++ +   + S  A + +             +  +   SCCS
Sbjct:    7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLAENRVVSYEAGKALADEIGIPFLETSAKDATNVEKAFMTMAGEIKNRMASQPATNASKPATVQMR-----------GQPVAQQSSCCS 202          
BLAST of CX674863 vs. ExPASy Swiss-Prot
Match: RAB8A_PONAB (Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8A PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.211e-44
Identity = 90/205 (43.90%), Postives = 136/205 (66.34%), Query Frame = 1
Query:  169 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVSRKVLNSDSYKAELSLNRVTLVKSETDGSKQTSSYFSC 783
            YLFK+++IGDS VGK+ +L R++ + FN    +TIG++F+ +++E+DGK +K QIWDTAGQERFR +T+AYYRGA+G ++VYDIT   +FD+I  W+  ++ H+   V +M++GNK D+   R VS E G+ LA   G+ FMETSA  + NV+NAF  + R+I + + +K+  +    +         VK   D  K+ SS+F C
Sbjct:    7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKRDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSNQG------VKITPDQQKR-SSFFRC 204          
BLAST of CX674863 vs. ExPASy Swiss-Prot
Match: YPT2_SCHPO (GTP-binding protein ypt2 OS=Schizosaccharomyces pombe GN=ypt2 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.600e-43
Identity = 80/163 (49.08%), Postives = 118/163 (72.39%), Query Frame = 1
Query:  169 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREI 657
            YL K+++IGDS VGKS LL R++ + F P    TIG++F+ +++E+DGK +K QIWDTAGQERFR +T+AYYRGA+G L++YD+T + +FD++  W   ++ H+   V ++L+GNKCD E  R VS E+G++LA+  G+ F+E SA  + NV  AF  + REI
Sbjct:    8 YLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDCEDQRQVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAREI 170          
BLAST of CX674863 vs. ExPASy Swiss-Prot
Match: RAB14_RAT (Ras-related protein Rab-14 OS=Rattus norvegicus GN=Rab14 PE=2 SV=3)

HSP 1 Score: 175.637 bits (444), Expect = 2.730e-43
Identity = 85/167 (50.90%), Postives = 117/167 (70.06%), Query Frame = 1
Query:  169 YLFKIVIIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNV 669
            Y+FK +IIGD  VGKS LL ++   +F      TIGVEF T+ +E+ G+++K QIWDTAGQERFRAVT +YYRGA GAL+VYDITRR+T++ +S WL + +  ++     +L+GNK DLE+ R+V+ EE K  AE  GL F+E SA    NV++AF    ++IY N+
Sbjct:   10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNI 176          
The following BLAST results are available for this feature:
BLAST of CX674863 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB8A_RAT3.809e-4543.90Ras-related protein Rab-8A OS=Rattus norvegicus GN... [more]
RAB8A_MOUSE3.809e-4543.90Ras-related protein Rab-8A OS=Mus musculus GN=Rab8... [more]
RAB8A_CHICK6.497e-4543.41Ras-related protein Rab-8A OS=Gallus gallus GN=RAB... [more]
RAB2B_DICDI8.486e-4556.05Ras-related protein Rab-2B OS=Dictyostelium discoi... [more]
RAB2B_MAIZE1.108e-4445.71Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B P... [more]
RAB2A_DICDI3.225e-4443.69Ras-related protein Rab-2A OS=Dictyostelium discoi... [more]
RIC1_ORYSJ4.211e-4443.96Ras-related protein RIC1 OS=Oryza sativa subsp. ja... [more]
RAB8A_PONAB4.211e-4443.90Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8... [more]
YPT2_SCHPO1.600e-4349.08GTP-binding protein ypt2 OS=Schizosaccharomyces po... [more]
RAB14_RAT2.730e-4350.90Ras-related protein Rab-14 OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_9B08_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-9B08-C15-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674863 ID=CX674863; Name=CX674863; organism=Citrus sinensis; type=EST; length=797bp
CGCAGTATGTCTGTGCCAGCTTGACACCAGTCGCAGCACCACCACCATTA
TTGTTATTTATTTATTTTTTTTATTTTTTTTCCTTTTAGCTTCCAGTTTC
CATTCAAGGGAATTCAATTCAAAACGATGTCGTCGTCGGATGAAGAAGGA
GGAGGAGGAGGGGAGGAGTACTTGTTCAAGATCGTGATAATCGGCGACTC
GGCGGTGGGGAAATCGAACCTACTGTCTCGTTACGCTCGGAACGAGTTCA
ATCCTCACTCGAAGGCGACAATTGGAGTCGAGTTTCAAACGCAGAGCATG
GAGATCGACGGCAAGGAAGTCAAGGCTCAGATTTGGGACACCGCCGGCCA
GGAGCGCTTCCGCGCCGTCACTTCTGCTTACTACAGAGGCGCCGTCGGTG
CTCTCATTGTTTACGACATTACCAGGCGTACCACTTTTGACAGCATCTCT
CGCTGGCTCGATGAGCTCAAGACTCATTCTGATACCACTGTGGCAAGGAT
GCTGGTCGGGAACAAATGTGATTTGGAGAGTATCCGGAATGTGAGCACTG
AAGAAGGCAAAAGCCTTGCAGAAGCAGAAGGGTTGTTTTTCATGGAAACT
TCTGCATTGGACTCGACGAATGTTAAAAATGCTTTTGAGATTGTCATCCG
AGAGATTTACAGCAATGTCAGCAGGAAGGTCCTGAATTCAGATAGTTACA
AAGCTGAATTATCTCTCAACCGGGTAACCCTCGTAAAATCTGAAACCGAT
GGATCAAAGCAAACATCCAGTTATTTTTCTTGCTGTTCAAGGTGACC
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