CX069603

Overview
NameCX069603
Unique NameCX069603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length520
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Homology
BLAST of CX069603 vs. ExPASy Swiss-Prot
Match: ADH1_PERMA (Alcohol dehydrogenase 1 OS=Peromyscus maniculatus GN=ADH1 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 2.341e-23
Identity = 52/121 (42.98%), Postives = 77/121 (63.64%), Query Frame = -2
Query:  157 QVIAEMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 519
            +V+ EMT+GGVD S E  G +  M S+    H   GV+V+VGVP    +   +PM+LL  R+ KG  FG +K +  +P +V  +M K+  LE  ITH +PF +IN+AFDL+ +G+SIR ++
Sbjct:  253 EVLQEMTDGGVDFSFEVIGRLDTMTSSLLSCHASCGVSVIVGVPPNAQSLSVNPMSLLMGRSWKGAIFGGFKSKDSVPKLVTDFMAKKFPLEPLITHVLPFEKINEAFDLLRAGKSIRTVL 373          
BLAST of CX069603 vs. ExPASy Swiss-Prot
Match: ADH1B_PANTR (Alcohol dehydrogenase 1B OS=Pan troglodytes GN=ADH1B PE=2 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 2.341e-23
Identity = 50/121 (41.32%), Postives = 76/121 (62.81%), Query Frame = -2
Query:  157 QVIAEMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 519
            +V+ EMT+GGVD S E  G +  M+++  C H+  G +V+VGVP        +PM LL  RT KG  +G +K +  +P +V  +M K+  L+  ITH +PF +IN+ FDL+ SG+SIR ++
Sbjct:  253 EVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPASQNLSINPMLLLTGRTWKGAVYGGFKSKEGIPKLVADFMAKKFSLDALITHVLPFEKINEGFDLLHSGKSIRTVL 373          
BLAST of CX069603 vs. ExPASy Swiss-Prot
Match: ADH1B_HUMAN (Alcohol dehydrogenase 1B OS=Homo sapiens GN=ADH1B PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 2.341e-23
Identity = 50/121 (41.32%), Postives = 76/121 (62.81%), Query Frame = -2
Query:  157 QVIAEMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 519
            +V+ EMT+GGVD S E  G +  M+++  C H+  G +V+VGVP        +PM LL  RT KG  +G +K +  +P +V  +M K+  L+  ITH +PF +IN+ FDL+ SG+SIR ++
Sbjct:  253 EVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPASQNLSINPMLLLTGRTWKGAVYGGFKSKEGIPKLVADFMAKKFSLDALITHVLPFEKINEGFDLLHSGKSIRTVL 373          
BLAST of CX069603 vs. ExPASy Swiss-Prot
Match: ADH4_HUMAN (Alcohol dehydrogenase 4 OS=Homo sapiens GN=ADH4 PE=1 SV=4)

HSP 1 Score: 107.842 bits (268), Expect = 3.058e-23
Identity = 49/121 (40.50%), Postives = 72/121 (59.50%), Query Frame = -2
Query:  157 QVIAEMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 519
            +VI E+T GGVD +++C G  + M +A +C   GWG    +GV          P  L+  RT+ GTFFG +K    +P +V  Y NK+  L+  +TH +PF +I++AFDLM  G+SIR I+
Sbjct:  258 EVIIELTKGGVDFALDCAGGSETMKAALDCTTAGWGSCTFIGVAAGSKGLTVFPEELIIGRTINGTFFGGWKSVDSIPKLVTDYKNKKFNLDALVTHTLPFDKISEAFDLMNQGKSIRTIL 378          
BLAST of CX069603 vs. ExPASy Swiss-Prot
Match: ADH1_MOUSE (Alcohol dehydrogenase 1 OS=Mus musculus GN=Adh1 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 5.216e-23
Identity = 54/121 (44.63%), Postives = 75/121 (61.98%), Query Frame = -2
Query:  157 QVIAEMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 519
            +V+ EMT+GGVD S E  G +  M SA    H   GV+V+VGVP        +PM LL  RT KG  FG +K +  +P +V  +M K+  L+  ITH +PF +IN+AFDL+ SG+SIR ++
Sbjct:  253 EVLQEMTDGGVDFSFEVIGRLDTMTSALLSCHAACGVSVVVGVPPNAQNLSMNPMLLLLGRTWKGAIFGGFKSKDSVPKLVADFMAKKFPLDPLITHVLPFEKINEAFDLLRSGKSIRTVL 373          
BLAST of CX069603 vs. ExPASy Swiss-Prot
Match: ADH1G_HUMAN (Alcohol dehydrogenase 1C OS=Homo sapiens GN=ADH1C PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 5.216e-23
Identity = 50/121 (41.32%), Postives = 76/121 (62.81%), Query Frame = -2
Query:  157 QVIAEMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 519
            +V+ EMT+GGVD S E  G +  M+++  C H+  G +V+VGVP        +PM LL  RT KG  FG +K +  +P +V  +M K+  L+  IT+ +PF +IN+ FDL+ SG+SIR ++
Sbjct:  253 EVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPDSQNLSINPMLLLTGRTWKGAIFGGFKSKESVPKLVADFMAKKFSLDALITNILPFEKINEGFDLLRSGKSIRTVL 373          
BLAST of CX069603 vs. ExPASy Swiss-Prot
Match: ADH1A_HUMAN (Alcohol dehydrogenase 1A OS=Homo sapiens GN=ADH1A PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 6.812e-23
Identity = 51/121 (42.15%), Postives = 75/121 (61.98%), Query Frame = -2
Query:  157 QVIAEMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 519
            +V+ EMT+GGVD S E  G +  M+++  C H+  G +V+VGVP        +PM LL  RT KG   G +K +  +P +V  +M K+  L+  ITH +PF +IN+ FDL+ SG+SIR I+
Sbjct:  253 EVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPDSQNLSMNPMLLLTGRTWKGAILGGFKSKECVPKLVADFMAKKFSLDALITHVLPFEKINEGFDLLHSGKSIRTIL 373          
BLAST of CX069603 vs. ExPASy Swiss-Prot
Match: ADHX_CAEEL (Alcohol dehydrogenase class-3 OS=Caenorhabditis elegans GN=H24K24.3 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 8.897e-23
Identity = 48/122 (39.34%), Postives = 72/122 (59.02%), Query Frame = -2
Query:  148 IAEMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCIIRMD 513
            + E  +GG D + EC G+V  M  A E  H GWGV+ ++GV        T P  L+  RT KGT FG +K    +P +V+ YMNK++ +++FITH     +IN AFD++  GES+R ++  +
Sbjct:  261 LVEQFDGGFDYTFECIGNVHTMRQALEAAHKGWGVSCIIGVAGAGQEIATRPFQLVTGRTWKGTAFGGWKSVESVPRLVDDYMNKKLLIDEFITHRWNIDDINTAFDVLHKGESLRSVLAFE 382          
BLAST of CX069603 vs. ExPASy Swiss-Prot
Match: ADH4_RAT (Alcohol dehydrogenase 4 OS=Rattus norvegicus GN=Adh4 PE=2 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 8.897e-23
Identity = 51/120 (42.50%), Postives = 77/120 (64.17%), Query Frame = -2
Query:  157 VIAEMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 516
            VI E+T GGVD S++C G+ Q + +A +C   GWG   +VG   K D      ++++  R++KGTFFG +K    +P++V  Y NK+ +L+  +THA+PF +IN A DLM  G+SIR I+
Sbjct:  258 VITELTGGGVDFSLDCAGTAQTLKAAVDCTVVGWGSCTVVGA--KVDEMNISTVDMILGRSVKGTFFGGWKSVDSVPNLVTDYKNKKFDLDLLVTHALPFDKINDAIDLMNQGKSIRTIL 375          
BLAST of CX069603 vs. ExPASy Swiss-Prot
Match: ADH1A_PONAB (Alcohol dehydrogenase 1A OS=Pongo abelii GN=ADH1A PE=2 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 1.518e-22
Identity = 51/121 (42.15%), Postives = 74/121 (61.16%), Query Frame = -2
Query:  157 QVIAEMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 519
            +V+ EMT+GGVD S E  G +  M+++  C H+  G +V+VGVP        +PM LL  RT KG   G +K +  +P +V  +M K+  L+  ITH +PF +IN  FDL+ SG+SIR I+
Sbjct:  253 EVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPDSQNLSMNPMLLLTGRTWKGAVLGGFKSKECVPKLVADFMAKKFSLDALITHVLPFEKINDGFDLLHSGKSIRTIL 373          
The following BLAST results are available for this feature:
BLAST of CX069603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
ADH1_PERMA2.341e-2342.98Alcohol dehydrogenase 1 OS=Peromyscus maniculatus ... [more]
ADH1B_PANTR2.341e-2341.32Alcohol dehydrogenase 1B OS=Pan troglodytes GN=ADH... [more]
ADH1B_HUMAN2.341e-2341.32Alcohol dehydrogenase 1B OS=Homo sapiens GN=ADH1B ... [more]
ADH4_HUMAN3.058e-2340.50Alcohol dehydrogenase 4 OS=Homo sapiens GN=ADH4 PE... [more]
ADH1_MOUSE5.216e-2344.63Alcohol dehydrogenase 1 OS=Mus musculus GN=Adh1 PE... [more]
ADH1G_HUMAN5.216e-2341.32Alcohol dehydrogenase 1C OS=Homo sapiens GN=ADH1C ... [more]
ADH1A_HUMAN6.812e-2342.15Alcohol dehydrogenase 1A OS=Homo sapiens GN=ADH1A ... [more]
ADHX_CAEEL8.897e-2339.34Alcohol dehydrogenase class-3 OS=Caenorhabditis el... [more]
ADH4_RAT8.897e-2342.50Alcohol dehydrogenase 4 OS=Rattus norvegicus GN=Ad... [more]
ADH1A_PONAB1.518e-2242.15Alcohol dehydrogenase 1A OS=Pongo abelii GN=ADH1A ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11F04_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11F04-L7-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069603 ID=CX069603; Name=CX069603; organism=Citrus sinensis; type=EST; length=520bp
ACAACTCTTTGAAAGCCATTCGCAGCAAGTCATCAAACATACAGCATAAA
TTACTTATTCTCGGGGTAATATATAACTTGGAAAATTATGTGATCATCTT
CATTCTGCCTCCATTAGATTGATCAGCAACAGCAGACACATCTAACCATC
CATGCGAATGATGCACCTAATGCTTTCTCCCGAAAGCATGAGGTCAAATG
CCTTGTTTATCTCCGAGAAGGGCACAGCATGAGTGATGAATTTCTCAAGC
TCCATCTCCTTGTTCATGTATTTTTCAACAACTGAAGGAAGATCAGAGCG
AGGTTTGTAGTTGCCAAAGAAGGTACCCTTAAGAGTCCTCTCATTAAGCA
GATTCATGGGATGAGTCTTGAATGCATCATCTTTGTTTGGCACACCCACA
AGCACAGCAACACCCCAACCATCGTGAACGCATTCAAATGCTGAGATCAT
GGCCTGGACGCTTCCAGTACATTCAACACTTCTATCCACTCCACCATTGG
TCATTTCAGCAATCACCTGT
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