CX069603

Overview
NameCX069603
Unique NameCX069603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length520
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069603 vs. ExPASy Swiss-Prot
Match: FADH_YEAST (S-(hydroxymethyl)glutathione dehydrogenase OS=Saccharomyces cerevisiae GN=SFA1 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.982e-22
Identity = 45/122 (36.89%), Postives = 77/122 (63.11%), Query Frame = -2
Query:  148 IAEMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCIIRMD 513
            + EMT+GG+D + +CTG+ + M  A E  H GWG ++++GV    +   T P  L+  R  KG+ FG  K RS++  +++ Y    +++E+FITH  PF EIN+AF+ + +G+ +R +++ D
Sbjct:  262 LIEMTDGGLDFTFDCTGNTKIMRDALEACHKGWGQSIIIGVAAAGEEISTRPFQLVTGRVWKGSAFGGIKGRSEMGGLIKDYQKGALKVEEFITHRRPFKEINQAFEDLHNGDCLRTVLKSD 383          
BLAST of CX069603 vs. ExPASy Swiss-Prot
Match: ADH1_CHICK (Alcohol dehydrogenase 1 OS=Gallus gallus GN=ADH1 PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 1.982e-22
Identity = 49/121 (40.50%), Postives = 76/121 (62.81%), Query Frame = -2
Query:  157 QVIAEMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 519
            +V+ EMT  GVD S E  G ++ M +A    H+ +GV+V+VGVP         PM + + RT KG+ FG +K +  +P +V  YM K+  L+  ITH +PF++IN+ FDL+ +G+SIR ++
Sbjct:  254 EVLTEMTGQGVDYSFEVIGRIETMTAALASCHNNYGVSVIVGVPPAAQKISFDPMLIFSGRTWKGSVFGGWKSKDAVPKLVADYMKKKFVLDPLITHTLPFTKINEGFDLLRTGKSIRSVL 374          
BLAST of CX069603 vs. ExPASy Swiss-Prot
Match: ADH1G_PAPHA (Alcohol dehydrogenase 1C OS=Papio hamadryas GN=ADH1C PE=2 SV=3)

HSP 1 Score: 105.145 bits (261), Expect = 1.982e-22
Identity = 49/121 (40.50%), Postives = 76/121 (62.81%), Query Frame = -2
Query:  157 QVIAEMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 519
            +V+ EMT+GGVD S E  G +  ++++  C H+  G +V+VGVP        +P+ LL  RT KG  FG +K +  +P +V  +M K+  L+  IT+ +PF +IN+ FDL+ SG+SIR I+
Sbjct:  253 EVLKEMTDGGVDFSFEVIGRLDTIMASLLCCHEACGTSVIVGVPPDSQNLSINPVLLLTGRTWKGAIFGGFKSKESVPKLVSDFMAKKFSLDALITNVLPFEKINEGFDLLRSGKSIRTIL 373          
BLAST of CX069603 vs. ExPASy Swiss-Prot
Match: FADH2_SCHPO (Putative S-(hydroxymethyl)glutathione dehydrogenase 2 OS=Schizosaccharomyces pombe GN=SPCC13B11.04c PE=2 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 4.416e-22
Identity = 47/120 (39.17%), Postives = 74/120 (61.67%), Query Frame = -2
Query:  157 VIAEMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 516
            V+   T+GG+D + +CTG+V  M SA E  H GWG ++++GV        T P  L+  R  +G  FG  K RS LP +V++Y++ ++E++K+ITH  P  EIN+AF  M +G  I+ ++
Sbjct:  258 VLIHETDGGLDWTFDCTGNVHVMRSALEACHKGWGQSIVIGVAAAGQEISTRPFQLVTGRVWRGCAFGGVKGRSQLPDLVKEYLDHKLEIDKYITHRRPLKEINEAFTDMHNGNCIKTVL 377          
BLAST of CX069603 vs. ExPASy Swiss-Prot
Match: ADHL1_ARATH (Alcohol dehydrogenase-like 1 OS=Arabidopsis thaliana GN=At1g22430 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 5.767e-22
Identity = 52/124 (41.94%), Postives = 72/124 (58.06%), Query Frame = -2
Query:  148 QVIAEMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCIIRMD 519
            +VI EMT GGVD S EC G    +  AF     G G  V++G+            +LL  R + G+ FG  K + D+P +V+ Y+ KE+ L+ FITH + F EINKAF L+  G+S+RCI+ MD
Sbjct:  264 EVIKEMTEGGVDYSFECVGLASLLNEAFISTRTGTGKTVMLGMEKHAAPISLGSFDLLRGRVICGSLFGGLKSKLDIPILVDHYLKKELNLDSFITHELNFKEINKAFALLEEGKSLRCILWMD 387          
BLAST of CX069603 vs. ExPASy Swiss-Prot
Match: ADHI_RHOS4 (Alcohol dehydrogenase class-3 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=adhI PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 5.767e-22
Identity = 46/113 (40.71%), Postives = 71/113 (62.83%), Query Frame = -2
Query:  157 GGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 495
            GG D + +CTG+V+ M  A E  H GWG ++++GV       +T P  L+  R  KG+ FG  + R+D+P +V+ YM  +++++  ITH +   EINK FDLM +GESIR ++
Sbjct:  262 GGADYTFDCTGNVKVMRQALEACHRGWGQSIVIGVAPAGAEIQTRPFQLVTGRVWKGSAFGGARGRTDVPKIVDWYMEGKIQIDPMITHILSLEEINKGFDLMHAGESIRSVV 374          
BLAST of CX069603 vs. ExPASy Swiss-Prot
Match: ADH4_MOUSE (Alcohol dehydrogenase 4 OS=Mus musculus GN=Adh4 PE=1 SV=3)

HSP 1 Score: 103.219 bits (256), Expect = 7.532e-22
Identity = 50/120 (41.67%), Postives = 75/120 (62.50%), Query Frame = -2
Query:  157 VIAEMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 516
            VI E+T GGVD S++C G+ Q + +A +C   GWG   +VG   K D      ++++  R++ GTFFG +K    +P++V  Y NK+ +L+  +THA+PF  IN A DLM  G+SIR I+
Sbjct:  258 VITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGA--KVDEMTIPTVDVILGRSINGTFFGGWKSVDSVPNLVSDYKNKKFDLDLLVTHALPFESINDAIDLMKEGKSIRTIL 375          
BLAST of CX069603 vs. ExPASy Swiss-Prot
Match: ADH1_GEOAT (Alcohol dehydrogenase 1 OS=Geomys attwateri GN=ADH1 PE=2 SV=3)

HSP 1 Score: 103.219 bits (256), Expect = 7.532e-22
Identity = 50/121 (41.32%), Postives = 75/121 (61.98%), Query Frame = -2
Query:  157 QVIAEMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 519
            +V+ EMT+GGVD S E  G +   +SA  C  +  GV+V+VGVP    +    P  LL+ R+ KG  FG YK + D+P +V  +M K+  LE  IT+  P ++IN+ FDL+ +G+SIR ++
Sbjct:  253 EVLQEMTDGGVDFSFEVIGRLDTKVSALMCCQESHGVSVIVGVPPNAQSLTIDPKVLLSGRSWKGAVFGGYKGKDDVPKLVADFMAKKFPLEPLITNVFPLAKINEGFDLLRAGKSIRTVL 373          
BLAST of CX069603 vs. ExPASy Swiss-Prot
Match: ADH1_COTJA (Alcohol dehydrogenase 1 OS=Coturnix coturnix japonica GN=ADH1 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 7.532e-22
Identity = 49/121 (40.50%), Postives = 74/121 (61.16%), Query Frame = -2
Query:  157 QVIAEMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 519
            +V+ EMT  GVD S E  G ++ M  A    H  +GV+V+VGVP         PM + + RT KG+ FG +K +  +P +V  YM K+  L+  ITH +PF++IN+ FDL+ +G+SIR ++
Sbjct:  253 EVLTEMTGKGVDYSFEVIGRIETMTEALASCHYNYGVSVIVGVPPAAQKISFDPMLIFSGRTWKGSVFGGWKSKDAVPKLVADYMKKKFVLDPLITHTLPFTKINEGFDLLRTGKSIRTVL 373          
BLAST of CX069603 vs. ExPASy Swiss-Prot
Match: ADH1_ANAPL (Alcohol dehydrogenase 1 (Fragment) OS=Anas platyrhynchos GN=ADH1 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 7.532e-22
Identity = 50/121 (41.32%), Postives = 75/121 (61.98%), Query Frame = -2
Query:  157 QVIAEMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 519
            +V+  MT  GVD S E  G ++ M++A    H  +GV+V+VGVP         PM L + RT KG+ FG +K +  +P +V  YM K+  L+  ITH +PFS+IN+ FDL+ +G+SIR ++
Sbjct:   63 KVLIGMTGYGVDYSFEVIGRIETMVAALASCHYNYGVSVIVGVPPAAQNITFDPMLLFSGRTWKGSVFGGWKSKDSVPKLVADYMKKKFVLDPLITHTLPFSKINEGFDLLRAGKSIRSVL 183          
The following BLAST results are available for this feature:
BLAST of CX069603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
FADH_YEAST1.982e-2236.89S-(hydroxymethyl)glutathione dehydrogenase OS=Sacc... [more]
ADH1_CHICK1.982e-2240.50Alcohol dehydrogenase 1 OS=Gallus gallus GN=ADH1 P... [more]
ADH1G_PAPHA1.982e-2240.50Alcohol dehydrogenase 1C OS=Papio hamadryas GN=ADH... [more]
FADH2_SCHPO4.416e-2239.17Putative S-(hydroxymethyl)glutathione dehydrogenas... [more]
ADHL1_ARATH5.767e-2241.94Alcohol dehydrogenase-like 1 OS=Arabidopsis thalia... [more]
ADHI_RHOS45.767e-2240.71Alcohol dehydrogenase class-3 OS=Rhodobacter sphae... [more]
ADH4_MOUSE7.532e-2241.67Alcohol dehydrogenase 4 OS=Mus musculus GN=Adh4 PE... [more]
ADH1_GEOAT7.532e-2241.32Alcohol dehydrogenase 1 OS=Geomys attwateri GN=ADH... [more]
ADH1_COTJA7.532e-2240.50Alcohol dehydrogenase 1 OS=Coturnix coturnix japon... [more]
ADH1_ANAPL7.532e-2241.32Alcohol dehydrogenase 1 (Fragment) OS=Anas platyrh... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11F04_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11F04-L7-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069603 ID=CX069603; Name=CX069603; organism=Citrus sinensis; type=EST; length=520bp
ACAACTCTTTGAAAGCCATTCGCAGCAAGTCATCAAACATACAGCATAAA
TTACTTATTCTCGGGGTAATATATAACTTGGAAAATTATGTGATCATCTT
CATTCTGCCTCCATTAGATTGATCAGCAACAGCAGACACATCTAACCATC
CATGCGAATGATGCACCTAATGCTTTCTCCCGAAAGCATGAGGTCAAATG
CCTTGTTTATCTCCGAGAAGGGCACAGCATGAGTGATGAATTTCTCAAGC
TCCATCTCCTTGTTCATGTATTTTTCAACAACTGAAGGAAGATCAGAGCG
AGGTTTGTAGTTGCCAAAGAAGGTACCCTTAAGAGTCCTCTCATTAAGCA
GATTCATGGGATGAGTCTTGAATGCATCATCTTTGTTTGGCACACCCACA
AGCACAGCAACACCCCAACCATCGTGAACGCATTCAAATGCTGAGATCAT
GGCCTGGACGCTTCCAGTACATTCAACACTTCTATCCACTCCACCATTGG
TCATTTCAGCAATCACCTGT
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