CV887372

Overview
NameCV887372
Unique NameCV887372
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_MYCBP (Peptidyl-tRNA hydrolase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=pth PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.349e-24
Identity = 45/123 (36.59%), Postives = 69/123 (56.10%), Query Frame = 2
Query:  488 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856
            ++LAKP+ YMN SG   GPLA +Y +    ++V HDD+ L  G                +SV+    G ++F R+RIGIGRPPG+ DP AF+L+ F    R  + T  ++  +  +LL+ +G+
Sbjct:   60 LVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQGM 181          

HSP 2 Score: 43.1282 bits (100), Expect = 4.349e-24
Identity = 20/37 (54.05%), Postives = 23/37 (62.16%), Query Frame = 3
Query:  315 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQG 425
            +A P L VGLGNPG  Y  TRHN+GF + D  A   G
Sbjct:    1 MAEPLLVVGLGNPGANYARTRHNLGFVVADLLAARLG 37          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_MYCBO (Peptidyl-tRNA hydrolase OS=Mycobacterium bovis GN=pth PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.349e-24
Identity = 45/123 (36.59%), Postives = 69/123 (56.10%), Query Frame = 2
Query:  488 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856
            ++LAKP+ YMN SG   GPLA +Y +    ++V HDD+ L  G                +SV+    G ++F R+RIGIGRPPG+ DP AF+L+ F    R  + T  ++  +  +LL+ +G+
Sbjct:   60 LVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQGM 181          

HSP 2 Score: 43.1282 bits (100), Expect = 4.349e-24
Identity = 20/37 (54.05%), Postives = 23/37 (62.16%), Query Frame = 3
Query:  315 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQG 425
            +A P L VGLGNPG  Y  TRHN+GF + D  A   G
Sbjct:    1 MAEPLLVVGLGNPGANYARTRHNLGFVVADLLAARLG 37          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_MYCSS (Peptidyl-tRNA hydrolase OS=Mycobacterium sp. (strain MCS) GN=pth PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.660e-24
Identity = 46/130 (35.38%), Postives = 74/130 (56.92%), Query Frame = 2
Query:  467 RFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856
            R  G A V+LAKP+TYMN SG + GPLA +Y +    V+V HD++ +  G                KSV     G ++F R+R+G+GRPPG+ D   ++L+ F ++ R  + T  ++  +  +LL+++GL
Sbjct:   54 RLAGRA-VVLAKPRTYMNESGRNVGPLAKFYSVAPADVIVIHDELDIDFGRIRLKFGGGVAGHNGLKSVAAAL-GTKDFQRVRVGVGRPPGRKDAATYVLEPFTSVERPEVPTICEQAADATELLIAQGL 181          

HSP 2 Score: 43.8986 bits (102), Expect = 5.660e-24
Identity = 20/33 (60.61%), Postives = 22/33 (66.67%), Query Frame = 3
Query:  315 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFA 413
            +A P L VGLGNPG  Y  TRHNVGF + D  A
Sbjct:    1 MAEPLLVVGLGNPGPNYAKTRHNVGFVVADLLA 33          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_MYCSK (Peptidyl-tRNA hydrolase OS=Mycobacterium sp. (strain KMS) GN=pth PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.660e-24
Identity = 46/130 (35.38%), Postives = 74/130 (56.92%), Query Frame = 2
Query:  467 RFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856
            R  G A V+LAKP+TYMN SG + GPLA +Y +    V+V HD++ +  G                KSV     G ++F R+R+G+GRPPG+ D   ++L+ F ++ R  + T  ++  +  +LL+++GL
Sbjct:   54 RLAGRA-VVLAKPRTYMNESGRNVGPLAKFYSVAPADVIVIHDELDIDFGRIRLKFGGGVAGHNGLKSVAAAL-GTKDFQRVRVGVGRPPGRKDAATYVLEPFTSVERPEVPTICEQAADATELLIAQGL 181          

HSP 2 Score: 43.8986 bits (102), Expect = 5.660e-24
Identity = 20/33 (60.61%), Postives = 22/33 (66.67%), Query Frame = 3
Query:  315 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFA 413
            +A P L VGLGNPG  Y  TRHNVGF + D  A
Sbjct:    1 MAEPLLVVGLGNPGPNYAKTRHNVGFVVADLLA 33          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_MYCSJ (Peptidyl-tRNA hydrolase OS=Mycobacterium sp. (strain JLS) GN=pth PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.660e-24
Identity = 46/130 (35.38%), Postives = 74/130 (56.92%), Query Frame = 2
Query:  467 RFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856
            R  G A V+LAKP+TYMN SG + GPLA +Y +    V+V HD++ +  G                KSV     G ++F R+R+G+GRPPG+ D   ++L+ F ++ R  + T  ++  +  +LL+++GL
Sbjct:   54 RLAGRA-VVLAKPRTYMNESGRNVGPLAKFYSVAPADVIVIHDELDIDFGRIRLKFGGGVAGHNGLKSVAAAL-GTKDFQRVRVGVGRPPGRKDAATYVLEPFTSVERPEVPTICEQAADATELLIAQGL 181          

HSP 2 Score: 43.8986 bits (102), Expect = 5.660e-24
Identity = 20/33 (60.61%), Postives = 22/33 (66.67%), Query Frame = 3
Query:  315 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFA 413
            +A P L VGLGNPG  Y  TRHNVGF + D  A
Sbjct:    1 MAEPLLVVGLGNPGPNYAKTRHNVGFVVADLLA 33          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_MYCGI (Peptidyl-tRNA hydrolase OS=Mycobacterium gilvum (strain PYR-GCK) GN=pth PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 5.660e-24
Identity = 43/124 (34.68%), Postives = 69/124 (55.65%), Query Frame = 2
Query:  485 PVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856
            PV+LAKP+ YMN SG   GPLA +Y +    V++ HD++ +  G                +SV +    N +F R+R+GIGRPPGQ    +F+L+ FN+  R  + T +++  +  +LL+  G+
Sbjct:   59 PVVLAKPRVYMNESGRQVGPLAKFYSIAPTDVVIIHDELDIDFGRIRLKAGGGVAGHNGLRSVGSALSTN-DFQRVRVGIGRPPGQKSGASFVLEPFNSRERPELGTIIEQAADATELLIELGI 181          

HSP 2 Score: 46.9802 bits (110), Expect = 5.660e-24
Identity = 23/47 (48.94%), Postives = 30/47 (63.83%), Query Frame = 3
Query:  315 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKA 455
            +A P L VGLGNPG +Y  TRHN+GF + D  A+  G +   VH K+
Sbjct:    1 MAEPVLVVGLGNPGPQYATTRHNIGFMVADVLADRMGETFK-VHKKS 46          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_CLOD6 (Peptidyl-tRNA hydrolase OS=Clostridium difficile (strain 630) GN=pth PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 7.374e-24
Identity = 40/128 (31.25%), Postives = 67/128 (52.34%), Query Frame = 2
Query:  473 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856
            VG   VLL KPQTYMNLSGE+   +  YYK+ L+ ++V +DD+ L  G                KS+     G+ +F R+R+G+ +P    D   F+L +F     + I+ AL++  + +  ++ + +
Sbjct:   51 VGTEKVLLVKPQTYMNLSGETLIDIYKYYKVDLSNIVVVYDDIDLEVGKIRIRKKGSGGTHNGMKSI-TKCLGSNDFPRVRVGVSKPEAGQDLADFVLSRFRKEESDNINEALEKAADAIDSIIRENI 177          

HSP 2 Score: 56.9954 bits (136), Expect = 7.374e-24
Identity = 25/48 (52.08%), Postives = 34/48 (70.83%), Query Frame = 3
Query:  327 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQG 470
            ++ VGLGNPG KY+ TRHNVGF++ID  A+   IS+  +  KA  G+G
Sbjct:    2 YVVVGLGNPGKKYEKTRHNVGFDVIDILAKEYNISVTKIKHKALIGEG 49          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_MYCMM (Peptidyl-tRNA hydrolase OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=pth PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.112e-23
Identity = 45/123 (36.59%), Postives = 68/123 (55.28%), Query Frame = 2
Query:  488 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856
            V+LAKP+ YMN SG    PLA +Y +P   ++V HD++ L  G                +SV     G ++F R+RIGIGRPPG+ DP  F+L+ F++  R  + T  ++  +  +LL+  GL
Sbjct:   60 VVLAKPRCYMNESGRQVAPLAKFYSVPPADLIVIHDELDLDFGRIRLKFGGGEGGHNGLRSVAAAL-GTKDFQRVRIGIGRPPGRKDPATFVLENFSSPERPEVPTICEQAADATELLVEIGL 181          

HSP 2 Score: 44.669 bits (104), Expect = 2.112e-23
Identity = 20/37 (54.05%), Postives = 24/37 (64.86%), Query Frame = 3
Query:  315 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQG 425
            +A P L VGLGNPG+ Y  TRHN+GF + D  A   G
Sbjct:    1 MAEPLLVVGLGNPGENYARTRHNLGFMVADLLAARLG 37          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_MYCUA (Peptidyl-tRNA hydrolase OS=Mycobacterium ulcerans (strain Agy99) GN=pth PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.749e-23
Identity = 45/123 (36.59%), Postives = 67/123 (54.47%), Query Frame = 2
Query:  488 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856
            V+LAKP+ YMN SG    PLA +Y +P   ++V HD++ L  G                +SV     G + F R+RIGIGRPPG+ DP  F+L+ F++  R  + T  ++  +  +LL+  GL
Sbjct:   60 VVLAKPRCYMNESGRQVAPLAKFYSVPPADLIVIHDELDLDFGRIRLKFGGGEGGHNGLRSVAAAL-GTKNFQRVRIGIGRPPGRKDPATFVLENFSSPERPEVPTICEQAADATELLVEVGL 181          

HSP 2 Score: 44.669 bits (104), Expect = 2.749e-23
Identity = 20/37 (54.05%), Postives = 24/37 (64.86%), Query Frame = 3
Query:  315 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQG 425
            +A P L VGLGNPG+ Y  TRHN+GF + D  A   G
Sbjct:    1 MAEPLLVVGLGNPGENYARTRHNLGFMVADLLAARLG 37          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_CARHZ (Peptidyl-tRNA hydrolase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=pth PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 3.581e-23
Identity = 47/122 (38.52%), Postives = 69/122 (56.56%), Query Frame = 2
Query:  488 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKG 853
            VLL KPQTYMNLSG +     ++YKLPL+R++V +DD+ LP G                 S+++   G+ E  RL+IGIGR P   D K ++LQ F    RE ++  L+   E + + L++G
Sbjct:   56 VLLLKPQTYMNLSGTAVQEAVSFYKLPLSRLVVVYDDLDLPLGKIRLRLKGSAGGHRGMGSIISCL-GSEEIPRLKIGIGR-PAVGDVKDYVLQPFTGAEREILEPTLKLAAEAITVALTEG 175          

HSP 2 Score: 48.9062 bits (115), Expect = 3.581e-23
Identity = 20/48 (41.67%), Postives = 30/48 (62.50%), Query Frame = 3
Query:  327 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQG 470
            ++  GLGNPG +Y+ TRHN GF ++D  A+  GI +     K+  G+G
Sbjct:    2 FIIAGLGNPGQEYENTRHNAGFMVVDELAKKHGILITKRKFKSLVGEG 49          
The following BLAST results are available for this feature:
BLAST of CV887372 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PTH_MYCBP4.349e-2436.59Peptidyl-tRNA hydrolase OS=Mycobacterium bovis (st... [more]
PTH_MYCBO4.349e-2436.59Peptidyl-tRNA hydrolase OS=Mycobacterium bovis GN=... [more]
PTH_MYCSS5.660e-2435.38Peptidyl-tRNA hydrolase OS=Mycobacterium sp. (stra... [more]
PTH_MYCSK5.660e-2435.38Peptidyl-tRNA hydrolase OS=Mycobacterium sp. (stra... [more]
PTH_MYCSJ5.660e-2435.38Peptidyl-tRNA hydrolase OS=Mycobacterium sp. (stra... [more]
PTH_MYCGI5.660e-2434.68Peptidyl-tRNA hydrolase OS=Mycobacterium gilvum (s... [more]
PTH_CLOD67.374e-2431.25Peptidyl-tRNA hydrolase OS=Clostridium difficile (... [more]
PTH_MYCMM2.112e-2336.59Peptidyl-tRNA hydrolase OS=Mycobacterium marinum (... [more]
PTH_MYCUA2.749e-2336.59Peptidyl-tRNA hydrolase OS=Mycobacterium ulcerans ... [more]
PTH_CARHZ3.581e-2338.52Peptidyl-tRNA hydrolase OS=Carboxydothermus hydrog... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_030H06_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T3_H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887372 ID=CV887372; Name=CV887372; organism=Citrus sinensis; type=EST; length=857bp
AGAGAACGACACATTCACTCACACACGTCCTCTCTGCAGCCACAGCCGCC
GCTTACAAACGCCCCTCTAACCCTAAGCTGACAAACGCCCACGCCCACGC
CCACGCTGCCGGCGCTGTCACTTTGGTTCAAGTGTGCCGACGCTGCAGCT
TCTAGCCGTTCTCGATTTGCTTCCTCGTTCCAGCTGCTGCGCTGCCTCCG
GCTTCGTTCGCCGTCGTCAGCCGTCGTCAGCCGCACAAGTGAAGTGGAAG
GAAACTGAGAACATTTGAGGAGATGCTTATTAACAGGTTTCTGAGGCGTG
GTTTCTGCACTGCTGTTGCTCGGCCATGGCTTTTTGTGGGGTTGGGTAAC
CCGGGAGATAAATACAAAGGAACTAGACACAATGTGGGGTTTGAGATGAT
CGACGCATTTGCTGAATCACAAGGGATTTCTATGAACACGGTTCATTGCA
AAGCTACTTTCGGACAAGGTTTGTTGGTGATGCCCCTGTACTCCTTGCAA
AGCCACAGACTTACATGAATCTGAGCGGTGAATCTACTGGACCACTTGCA
GCTTATTATAAGTTACCTCTTAATCGTGTTCTTGTGTTTCATGATGACAT
GGGCTTACCTTGTGGAGTGCTTCGTCTGCGCCACAATGGAGGTCATGGAG
GCCACAATGGGCTGAAGAGTGTGATGAACAACTTTCGAGGTAACCGAGAA
TTTGCTCGGCTAAGAATTGGTATTGGGAGGCCTCCTGGTCAAATGGATCC
TAAAGCTTTCTTGCTGCAGAAGTTTAATGCAATAGCTCGAGAGCGAATTG
ATACTGCTTTGCAAGAAAGGGTTGAGGTTCTGAAGCTGCTTTTATCTAAA
GGCTTGA
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