CV887372
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_MYCBP (Peptidyl-tRNA hydrolase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=pth PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 4.349e-24 Identity = 45/123 (36.59%), Postives = 69/123 (56.10%), Query Frame = 2 Query: 488 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856 ++LAKP+ YMN SG GPLA +Y + ++V HDD+ L G +SV+ G ++F R+RIGIGRPPG+ DP AF+L+ F R + T ++ + +LL+ +G+ Sbjct: 60 LVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQGM 181 HSP 2 Score: 43.1282 bits (100), Expect = 4.349e-24 Identity = 20/37 (54.05%), Postives = 23/37 (62.16%), Query Frame = 3 Query: 315 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQG 425 +A P L VGLGNPG Y TRHN+GF + D A G Sbjct: 1 MAEPLLVVGLGNPGANYARTRHNLGFVVADLLAARLG 37
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_MYCBO (Peptidyl-tRNA hydrolase OS=Mycobacterium bovis GN=pth PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 4.349e-24 Identity = 45/123 (36.59%), Postives = 69/123 (56.10%), Query Frame = 2 Query: 488 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856 ++LAKP+ YMN SG GPLA +Y + ++V HDD+ L G +SV+ G ++F R+RIGIGRPPG+ DP AF+L+ F R + T ++ + +LL+ +G+ Sbjct: 60 LVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQGM 181 HSP 2 Score: 43.1282 bits (100), Expect = 4.349e-24 Identity = 20/37 (54.05%), Postives = 23/37 (62.16%), Query Frame = 3 Query: 315 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQG 425 +A P L VGLGNPG Y TRHN+GF + D A G Sbjct: 1 MAEPLLVVGLGNPGANYARTRHNLGFVVADLLAARLG 37
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_MYCSS (Peptidyl-tRNA hydrolase OS=Mycobacterium sp. (strain MCS) GN=pth PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 5.660e-24 Identity = 46/130 (35.38%), Postives = 74/130 (56.92%), Query Frame = 2 Query: 467 RFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856 R G A V+LAKP+TYMN SG + GPLA +Y + V+V HD++ + G KSV G ++F R+R+G+GRPPG+ D ++L+ F ++ R + T ++ + +LL+++GL Sbjct: 54 RLAGRA-VVLAKPRTYMNESGRNVGPLAKFYSVAPADVIVIHDELDIDFGRIRLKFGGGVAGHNGLKSVAAAL-GTKDFQRVRVGVGRPPGRKDAATYVLEPFTSVERPEVPTICEQAADATELLIAQGL 181 HSP 2 Score: 43.8986 bits (102), Expect = 5.660e-24 Identity = 20/33 (60.61%), Postives = 22/33 (66.67%), Query Frame = 3 Query: 315 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFA 413 +A P L VGLGNPG Y TRHNVGF + D A Sbjct: 1 MAEPLLVVGLGNPGPNYAKTRHNVGFVVADLLA 33
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_MYCSK (Peptidyl-tRNA hydrolase OS=Mycobacterium sp. (strain KMS) GN=pth PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 5.660e-24 Identity = 46/130 (35.38%), Postives = 74/130 (56.92%), Query Frame = 2 Query: 467 RFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856 R G A V+LAKP+TYMN SG + GPLA +Y + V+V HD++ + G KSV G ++F R+R+G+GRPPG+ D ++L+ F ++ R + T ++ + +LL+++GL Sbjct: 54 RLAGRA-VVLAKPRTYMNESGRNVGPLAKFYSVAPADVIVIHDELDIDFGRIRLKFGGGVAGHNGLKSVAAAL-GTKDFQRVRVGVGRPPGRKDAATYVLEPFTSVERPEVPTICEQAADATELLIAQGL 181 HSP 2 Score: 43.8986 bits (102), Expect = 5.660e-24 Identity = 20/33 (60.61%), Postives = 22/33 (66.67%), Query Frame = 3 Query: 315 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFA 413 +A P L VGLGNPG Y TRHNVGF + D A Sbjct: 1 MAEPLLVVGLGNPGPNYAKTRHNVGFVVADLLA 33
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_MYCSJ (Peptidyl-tRNA hydrolase OS=Mycobacterium sp. (strain JLS) GN=pth PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 5.660e-24 Identity = 46/130 (35.38%), Postives = 74/130 (56.92%), Query Frame = 2 Query: 467 RFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856 R G A V+LAKP+TYMN SG + GPLA +Y + V+V HD++ + G KSV G ++F R+R+G+GRPPG+ D ++L+ F ++ R + T ++ + +LL+++GL Sbjct: 54 RLAGRA-VVLAKPRTYMNESGRNVGPLAKFYSVAPADVIVIHDELDIDFGRIRLKFGGGVAGHNGLKSVAAAL-GTKDFQRVRVGVGRPPGRKDAATYVLEPFTSVERPEVPTICEQAADATELLIAQGL 181 HSP 2 Score: 43.8986 bits (102), Expect = 5.660e-24 Identity = 20/33 (60.61%), Postives = 22/33 (66.67%), Query Frame = 3 Query: 315 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFA 413 +A P L VGLGNPG Y TRHNVGF + D A Sbjct: 1 MAEPLLVVGLGNPGPNYAKTRHNVGFVVADLLA 33
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_MYCGI (Peptidyl-tRNA hydrolase OS=Mycobacterium gilvum (strain PYR-GCK) GN=pth PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 5.660e-24 Identity = 43/124 (34.68%), Postives = 69/124 (55.65%), Query Frame = 2 Query: 485 PVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856 PV+LAKP+ YMN SG GPLA +Y + V++ HD++ + G +SV + N +F R+R+GIGRPPGQ +F+L+ FN+ R + T +++ + +LL+ G+ Sbjct: 59 PVVLAKPRVYMNESGRQVGPLAKFYSIAPTDVVIIHDELDIDFGRIRLKAGGGVAGHNGLRSVGSALSTN-DFQRVRVGIGRPPGQKSGASFVLEPFNSRERPELGTIIEQAADATELLIELGI 181 HSP 2 Score: 46.9802 bits (110), Expect = 5.660e-24 Identity = 23/47 (48.94%), Postives = 30/47 (63.83%), Query Frame = 3 Query: 315 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKA 455 +A P L VGLGNPG +Y TRHN+GF + D A+ G + VH K+ Sbjct: 1 MAEPVLVVGLGNPGPQYATTRHNIGFMVADVLADRMGETFK-VHKKS 46
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_CLOD6 (Peptidyl-tRNA hydrolase OS=Clostridium difficile (strain 630) GN=pth PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 7.374e-24 Identity = 40/128 (31.25%), Postives = 67/128 (52.34%), Query Frame = 2 Query: 473 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856 VG VLL KPQTYMNLSGE+ + YYK+ L+ ++V +DD+ L G KS+ G+ +F R+R+G+ +P D F+L +F + I+ AL++ + + ++ + + Sbjct: 51 VGTEKVLLVKPQTYMNLSGETLIDIYKYYKVDLSNIVVVYDDIDLEVGKIRIRKKGSGGTHNGMKSI-TKCLGSNDFPRVRVGVSKPEAGQDLADFVLSRFRKEESDNINEALEKAADAIDSIIRENI 177 HSP 2 Score: 56.9954 bits (136), Expect = 7.374e-24 Identity = 25/48 (52.08%), Postives = 34/48 (70.83%), Query Frame = 3 Query: 327 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQG 470 ++ VGLGNPG KY+ TRHNVGF++ID A+ IS+ + KA G+G Sbjct: 2 YVVVGLGNPGKKYEKTRHNVGFDVIDILAKEYNISVTKIKHKALIGEG 49
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_MYCMM (Peptidyl-tRNA hydrolase OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=pth PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.112e-23 Identity = 45/123 (36.59%), Postives = 68/123 (55.28%), Query Frame = 2 Query: 488 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856 V+LAKP+ YMN SG PLA +Y +P ++V HD++ L G +SV G ++F R+RIGIGRPPG+ DP F+L+ F++ R + T ++ + +LL+ GL Sbjct: 60 VVLAKPRCYMNESGRQVAPLAKFYSVPPADLIVIHDELDLDFGRIRLKFGGGEGGHNGLRSVAAAL-GTKDFQRVRIGIGRPPGRKDPATFVLENFSSPERPEVPTICEQAADATELLVEIGL 181 HSP 2 Score: 44.669 bits (104), Expect = 2.112e-23 Identity = 20/37 (54.05%), Postives = 24/37 (64.86%), Query Frame = 3 Query: 315 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQG 425 +A P L VGLGNPG+ Y TRHN+GF + D A G Sbjct: 1 MAEPLLVVGLGNPGENYARTRHNLGFMVADLLAARLG 37
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_MYCUA (Peptidyl-tRNA hydrolase OS=Mycobacterium ulcerans (strain Agy99) GN=pth PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.749e-23 Identity = 45/123 (36.59%), Postives = 67/123 (54.47%), Query Frame = 2 Query: 488 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856 V+LAKP+ YMN SG PLA +Y +P ++V HD++ L G +SV G + F R+RIGIGRPPG+ DP F+L+ F++ R + T ++ + +LL+ GL Sbjct: 60 VVLAKPRCYMNESGRQVAPLAKFYSVPPADLIVIHDELDLDFGRIRLKFGGGEGGHNGLRSVAAAL-GTKNFQRVRIGIGRPPGRKDPATFVLENFSSPERPEVPTICEQAADATELLVEVGL 181 HSP 2 Score: 44.669 bits (104), Expect = 2.749e-23 Identity = 20/37 (54.05%), Postives = 24/37 (64.86%), Query Frame = 3 Query: 315 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQG 425 +A P L VGLGNPG+ Y TRHN+GF + D A G Sbjct: 1 MAEPLLVVGLGNPGENYARTRHNLGFMVADLLAARLG 37
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_CARHZ (Peptidyl-tRNA hydrolase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=pth PE=3 SV=2) HSP 1 Score: 80.8777 bits (198), Expect = 3.581e-23 Identity = 47/122 (38.52%), Postives = 69/122 (56.56%), Query Frame = 2 Query: 488 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKG 853 VLL KPQTYMNLSG + ++YKLPL+R++V +DD+ LP G S+++ G+ E RL+IGIGR P D K ++LQ F RE ++ L+ E + + L++G Sbjct: 56 VLLLKPQTYMNLSGTAVQEAVSFYKLPLSRLVVVYDDLDLPLGKIRLRLKGSAGGHRGMGSIISCL-GSEEIPRLKIGIGR-PAVGDVKDYVLQPFTGAEREILEPTLKLAAEAITVALTEG 175 HSP 2 Score: 48.9062 bits (115), Expect = 3.581e-23 Identity = 20/48 (41.67%), Postives = 30/48 (62.50%), Query Frame = 3 Query: 327 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQG 470 ++ GLGNPG +Y+ TRHN GF ++D A+ GI + K+ G+G Sbjct: 2 FIIAGLGNPGQEYENTRHNAGFMVVDELAKKHGILITKRKFKSLVGEG 49 The following BLAST results are available for this feature:
BLAST of CV887372 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CV887372 ID=CV887372; Name=CV887372; organism=Citrus sinensis; type=EST; length=857bpback to top |