CV887372

Overview
NameCV887372
Unique NameCV887372
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_RHOSR (Peptidyl-tRNA hydrolase OS=Rhodococcus sp. (strain RHA1) GN=pth PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 4.657e-23
Identity = 43/130 (33.08%), Postives = 77/130 (59.23%), Query Frame = 2
Query:  467 RFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856
            RF G  P +LAKP+++MNLSG +   LA ++ +    ++V HD++ L  G                +S+ +   G +++ R R+GIGRPPG+MDP +++L+ F+++ R+ +D   +E  + ++L+L  GL
Sbjct:   55 RFEG-RPTILAKPRSFMNLSGSAVAGLARFFSVDPGNIVVIHDELDLDFGTIRLKQGGGEGGHNGLRSISSAL-GTKDYLRTRVGIGRPPGRMDPASYVLKPFSSVERKELDLVCEESADAVELVLRVGL 182          

HSP 2 Score: 39.2762 bits (90), Expect = 4.657e-23
Identity = 17/32 (53.12%), Postives = 21/32 (65.62%), Query Frame = 3
Query:  330 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQG 425
            L VGLGNPG +Y+ TRHNVGF +    +   G
Sbjct:    7 LVVGLGNPGPQYEKTRHNVGFMVAGVLSARMG 38          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_RHOOB (Peptidyl-tRNA hydrolase OS=Rhodococcus opacus (strain B4) GN=pth PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 4.657e-23
Identity = 40/124 (32.26%), Postives = 74/124 (59.68%), Query Frame = 2
Query:  485 PVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856
            P +LAKP+++MNLSG +   LA ++ +    ++V HD++ L  G                +S+  +  G +++ R R+GIGRPPG+MDP +++L+ F+++ R+ +D   +E  + ++L+L  GL
Sbjct:   60 PTILAKPRSFMNLSGSAVAGLARFFSVDPGNIVVIHDELDLDFGTIRLKQGGGEGGHNGLRSISQSL-GTKDYLRTRVGIGRPPGRMDPASYVLKPFSSVERKELDLVCEESADAVELVLRLGL 182          

HSP 2 Score: 39.2762 bits (90), Expect = 4.657e-23
Identity = 17/32 (53.12%), Postives = 21/32 (65.62%), Query Frame = 3
Query:  330 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQG 425
            L VGLGNPG +Y+ TRHNVGF +    +   G
Sbjct:    7 LVVGLGNPGPQYEKTRHNVGFMVAGVLSARMG 38          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_DEHSC (Peptidyl-tRNA hydrolase OS=Dehalococcoides sp. (strain CBDB1) GN=pth PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.026e-22
Identity = 45/131 (34.35%), Postives = 66/131 (50.38%), Query Frame = 2
Query:  473 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQ---MDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856
            + D  ++LAKPQTYMNLSG++   L   Y L    ++V  DD+ LP G                 S++ +  G +EF RL+IGIG+P  +    +    +L  F    RE I+TA+    E L  L++ GL
Sbjct:   51 INDEEIVLAKPQTYMNLSGKAVNQLLRRYNLKATDIIVVQDDLDLPAGKLRLRLGGSAGGHNGVSSIITDI-GTKEFIRLKIGIGKPDARNNGAEVVDHVLGNFGGEEREIIETAIARAAEALACLITSGL 180          

HSP 2 Score: 51.2174 bits (121), Expect = 1.026e-22
Identity = 22/47 (46.81%), Postives = 29/47 (61.70%), Query Frame = 3
Query:  330 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQG 470
            L +GLGNPG +Y G RHNVGF+ +  FA+   IS +   C +  G G
Sbjct:    3 LIIGLGNPGKEYSGNRHNVGFQCLSRFAKENHISFDKKCCLSRTGSG 49          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_DEHSB (Peptidyl-tRNA hydrolase OS=Dehalococcoides sp. (strain BAV1) GN=pth PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.737e-22
Identity = 45/131 (34.35%), Postives = 66/131 (50.38%), Query Frame = 2
Query:  473 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQ---MDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856
            + D  ++LAKPQTYMNLSG++   L   Y L    ++V  DD+ LP G                 S++ +  G +EF RL+IGIG+P  +    +    +L  F    RE I+TA+    E L  L++ GL
Sbjct:   51 INDEEIVLAKPQTYMNLSGKAVNQLLRRYNLKAADIIVVQDDLDLPAGKLRLRLGGSAGGHNGVSSIITDI-GTKEFIRLKIGIGKPDARNNGAEVVDHVLGNFGGEEREIIETAIARAAEALACLITSGL 180          

HSP 2 Score: 51.2174 bits (121), Expect = 1.737e-22
Identity = 22/47 (46.81%), Postives = 29/47 (61.70%), Query Frame = 3
Query:  330 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQG 470
            L +GLGNPG +Y G RHNVGF+ +  FA+   IS +   C +  G G
Sbjct:    3 LIIGLGNPGKEYSGNRHNVGFQCLSRFAKENHISFDKKCCLSRTGSG 49          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_RHOE4 (Peptidyl-tRNA hydrolase OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=pth PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.827e-22
Identity = 40/123 (32.52%), Postives = 71/123 (57.72%), Query Frame = 2
Query:  488 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856
            V+L KP++YMNLSG +   LA ++ +    ++V HD++ L  G                +S+ ++    +++ R R+GIGRPPG+MDP  ++L+ F++  R+ +D   +E  + ++LLL  GL
Sbjct:   61 VILGKPRSYMNLSGGAVAGLARFFSVDAANIIVVHDELDLDFGTIRLKLGGGEGGHNGLRSISSSLT-TKDYLRTRVGIGRPPGRMDPADYVLKPFSSTERKELDLVCEEAADAVELLLELGL 182          

HSP 2 Score: 41.5874 bits (96), Expect = 3.827e-22
Identity = 21/42 (50.00%), Postives = 26/42 (61.90%), Query Frame = 3
Query:  330 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKA 455
            L +GLGNPG +Y+ TRHNVGF +    A   G   N VH K+
Sbjct:    7 LVIGLGNPGPQYEKTRHNVGFMVAGTLAGRMGGKFN-VHKKS 47          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_CLONN (Peptidyl-tRNA hydrolase OS=Clostridium novyi (strain NT) GN=pth PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.827e-22
Identity = 40/127 (31.50%), Postives = 67/127 (52.76%), Query Frame = 2
Query:  473 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKG 853
            + +  V+L KP TYMNLSGES   +  +YK+P   V+V +DD+ L  G                K+++ +F G+  F R+++G+G+P  Q D  + +L KFN   RE +    +   +  + ++ KG
Sbjct:   51 IANEKVILLKPLTYMNLSGESIKEVTDFYKIPKENVIVIYDDISLEVGRMRIREKGSAGGHNGIKNIIAHF-GSDVFPRIKVGVGQPV-QRDLVSHVLGKFNKDDREILSKVFEAASDAAENIIEKG 175          

HSP 2 Score: 56.225 bits (134), Expect = 3.827e-22
Identity = 24/50 (48.00%), Postives = 33/50 (66.00%), Query Frame = 3
Query:  327 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGLL 476
            +L VGLGNPG +Y+ TRHNVGF++ID  +E   I +N    K  +G G +
Sbjct:    2 FLIVGLGNPGKEYEHTRHNVGFDIIDVISEKYNIDLNKKKFKGMYGDGTI 51          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_HERA2 (Peptidyl-tRNA hydrolase OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=pth PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.964e-22
Identity = 47/124 (37.90%), Postives = 66/124 (53.23%), Query Frame = 2
Query:  488 VLLAKPQTYMNLSGESTGPLAAYYKL-PLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856
            V LA+PQT+MN SG+S   L  +YK+ P + +LV +DD+ LP G                 S++    G ++FARLR GIGRPP   +   F+L  +NA  RE +       VE  +L LS G+
Sbjct:   56 VALARPQTFMNDSGKSVVGLVNWYKIDPASELLVVYDDLDLPFGTIKLRNQGSSGGQRGMNSIIQ-LLGTQKFARLRFGIGRPPEGWEVINFVLGNWNAAERETLPKLYDRAVEACELCLSDGV 178          

HSP 2 Score: 49.2914 bits (116), Expect = 4.964e-22
Identity = 22/50 (44.00%), Postives = 30/50 (60.00%), Query Frame = 3
Query:  327 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGLL 476
            +L VGLGNPG+KY   RHNVGF+ +  FA    +S +     A   +GL+
Sbjct:    2 FLIVGLGNPGEKYLNNRHNVGFQCVAEFARRHHLSFDGKRSDARIAEGLV 51          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_NITOC (Peptidyl-tRNA hydrolase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=pth PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.977e-22
Identity = 40/118 (33.90%), Postives = 65/118 (55.08%), Query Frame = 2
Query:  494 LAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLS 847
            L KP T+MN SG++   L  YY++PL  +L+ HDD+ LP GV               + ++N   G R+F RLR+G+G P    D  +++L + +   R+ I+ A+   +EVL  +L+
Sbjct:   63 LLKPATFMNRSGQAVLALLNYYQIPLEHLLIAHDDLDLPPGVAKLKRAGGHGGHNGLRDIINRL-GRRDFLRLRLGVGHPGSGQDVVSYVLNRPSREDRQAIEAAIGAGLEVLPEVLA 179          

HSP 2 Score: 50.8322 bits (120), Expect = 4.977e-22
Identity = 21/35 (60.00%), Postives = 25/35 (71.43%), Query Frame = 3
Query:  327 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGIS 431
            WL +GLGNPG +Y  TRHN GF  +DAFA   GI+
Sbjct:    6 WLLIGLGNPGTEYAQTRHNAGFWWLDAFASELGIN 40          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_ANASK (Peptidyl-tRNA hydrolase OS=Anaeromyxobacter sp. (strain K) GN=pth PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.424e-22
Identity = 46/127 (36.22%), Postives = 69/127 (54.33%), Query Frame = 2
Query:  473 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKG 853
            +G   V + KPQTYMN SGE+ G    ++KL L+ ++V HDD+ L                   KSV N   G+ E+AR+R+G+GRPP +MDP  ++L KF       +D  +++ VE  +L +  G
Sbjct:   51 LGPERVWIMKPQTYMNHSGEAVGAALRFWKLGLDDLVVVHDDLELDPYRVQLKVGGGHGGHNGVKSV-NAHVGSPEYARVRVGVGRPPPRMDPADYVLGKFAKGEDAELDLCVEQAVEATRLAVELG 176          

HSP 2 Score: 45.4394 bits (106), Expect = 8.424e-22
Identity = 22/49 (44.90%), Postives = 28/49 (57.14%), Query Frame = 3
Query:  330 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGLL 476
            L VGLGNPG++Y  TRHNVGF + D  A+  G S +     A   +  L
Sbjct:    3 LVVGLGNPGEEYARTRHNVGFVVADRLAQLAGASFSAKKFAAELAEARL 51          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_ANAD2 (Peptidyl-tRNA hydrolase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=pth PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.424e-22
Identity = 46/127 (36.22%), Postives = 69/127 (54.33%), Query Frame = 2
Query:  473 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKG 853
            +G   V + KPQTYMN SGE+ G    ++KL L+ ++V HDD+ L                   KSV N   G+ E+AR+R+G+GRPP +MDP  ++L KF       +D  +++ VE  +L +  G
Sbjct:   51 LGPERVWIMKPQTYMNHSGEAVGAALRFWKLGLDDLVVVHDDLELDPYRVQLKVGGGHGGHNGVKSV-NAHVGSPEYARVRVGVGRPPPRMDPADYVLGKFAKGEDAELDLCVEQAVEATRLAVELG 176          

HSP 2 Score: 45.4394 bits (106), Expect = 8.424e-22
Identity = 22/49 (44.90%), Postives = 28/49 (57.14%), Query Frame = 3
Query:  330 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGLL 476
            L VGLGNPG++Y  TRHNVGF + D  A+  G S +     A   +  L
Sbjct:    3 LVVGLGNPGEEYARTRHNVGFVVADRLAQLAGASFSAKKFAAELAEARL 51          
The following BLAST results are available for this feature:
BLAST of CV887372 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PTH_RHOSR4.657e-2333.08Peptidyl-tRNA hydrolase OS=Rhodococcus sp. (strain... [more]
PTH_RHOOB4.657e-2332.26Peptidyl-tRNA hydrolase OS=Rhodococcus opacus (str... [more]
PTH_DEHSC1.026e-2234.35Peptidyl-tRNA hydrolase OS=Dehalococcoides sp. (st... [more]
PTH_DEHSB1.737e-2234.35Peptidyl-tRNA hydrolase OS=Dehalococcoides sp. (st... [more]
PTH_RHOE43.827e-2232.52Peptidyl-tRNA hydrolase OS=Rhodococcus erythropoli... [more]
PTH_CLONN3.827e-2231.50Peptidyl-tRNA hydrolase OS=Clostridium novyi (stra... [more]
PTH_HERA24.964e-2237.90Peptidyl-tRNA hydrolase OS=Herpetosiphon aurantiac... [more]
PTH_NITOC4.977e-2233.90Peptidyl-tRNA hydrolase OS=Nitrosococcus oceani (s... [more]
PTH_ANASK8.424e-2236.22Peptidyl-tRNA hydrolase OS=Anaeromyxobacter sp. (s... [more]
PTH_ANAD28.424e-2236.22Peptidyl-tRNA hydrolase OS=Anaeromyxobacter dehalo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_030H06_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T3_H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887372 ID=CV887372; Name=CV887372; organism=Citrus sinensis; type=EST; length=857bp
AGAGAACGACACATTCACTCACACACGTCCTCTCTGCAGCCACAGCCGCC
GCTTACAAACGCCCCTCTAACCCTAAGCTGACAAACGCCCACGCCCACGC
CCACGCTGCCGGCGCTGTCACTTTGGTTCAAGTGTGCCGACGCTGCAGCT
TCTAGCCGTTCTCGATTTGCTTCCTCGTTCCAGCTGCTGCGCTGCCTCCG
GCTTCGTTCGCCGTCGTCAGCCGTCGTCAGCCGCACAAGTGAAGTGGAAG
GAAACTGAGAACATTTGAGGAGATGCTTATTAACAGGTTTCTGAGGCGTG
GTTTCTGCACTGCTGTTGCTCGGCCATGGCTTTTTGTGGGGTTGGGTAAC
CCGGGAGATAAATACAAAGGAACTAGACACAATGTGGGGTTTGAGATGAT
CGACGCATTTGCTGAATCACAAGGGATTTCTATGAACACGGTTCATTGCA
AAGCTACTTTCGGACAAGGTTTGTTGGTGATGCCCCTGTACTCCTTGCAA
AGCCACAGACTTACATGAATCTGAGCGGTGAATCTACTGGACCACTTGCA
GCTTATTATAAGTTACCTCTTAATCGTGTTCTTGTGTTTCATGATGACAT
GGGCTTACCTTGTGGAGTGCTTCGTCTGCGCCACAATGGAGGTCATGGAG
GCCACAATGGGCTGAAGAGTGTGATGAACAACTTTCGAGGTAACCGAGAA
TTTGCTCGGCTAAGAATTGGTATTGGGAGGCCTCCTGGTCAAATGGATCC
TAAAGCTTTCTTGCTGCAGAAGTTTAATGCAATAGCTCGAGAGCGAATTG
ATACTGCTTTGCAAGAAAGGGTTGAGGTTCTGAAGCTGCTTTTATCTAAA
GGCTTGA
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