CV887372
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_RHOSR (Peptidyl-tRNA hydrolase OS=Rhodococcus sp. (strain RHA1) GN=pth PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 4.657e-23 Identity = 43/130 (33.08%), Postives = 77/130 (59.23%), Query Frame = 2 Query: 467 RFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856 RF G P +LAKP+++MNLSG + LA ++ + ++V HD++ L G +S+ + G +++ R R+GIGRPPG+MDP +++L+ F+++ R+ +D +E + ++L+L GL Sbjct: 55 RFEG-RPTILAKPRSFMNLSGSAVAGLARFFSVDPGNIVVIHDELDLDFGTIRLKQGGGEGGHNGLRSISSAL-GTKDYLRTRVGIGRPPGRMDPASYVLKPFSSVERKELDLVCEESADAVELVLRVGL 182 HSP 2 Score: 39.2762 bits (90), Expect = 4.657e-23 Identity = 17/32 (53.12%), Postives = 21/32 (65.62%), Query Frame = 3 Query: 330 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQG 425 L VGLGNPG +Y+ TRHNVGF + + G Sbjct: 7 LVVGLGNPGPQYEKTRHNVGFMVAGVLSARMG 38
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_RHOOB (Peptidyl-tRNA hydrolase OS=Rhodococcus opacus (strain B4) GN=pth PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 4.657e-23 Identity = 40/124 (32.26%), Postives = 74/124 (59.68%), Query Frame = 2 Query: 485 PVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856 P +LAKP+++MNLSG + LA ++ + ++V HD++ L G +S+ + G +++ R R+GIGRPPG+MDP +++L+ F+++ R+ +D +E + ++L+L GL Sbjct: 60 PTILAKPRSFMNLSGSAVAGLARFFSVDPGNIVVIHDELDLDFGTIRLKQGGGEGGHNGLRSISQSL-GTKDYLRTRVGIGRPPGRMDPASYVLKPFSSVERKELDLVCEESADAVELVLRLGL 182 HSP 2 Score: 39.2762 bits (90), Expect = 4.657e-23 Identity = 17/32 (53.12%), Postives = 21/32 (65.62%), Query Frame = 3 Query: 330 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQG 425 L VGLGNPG +Y+ TRHNVGF + + G Sbjct: 7 LVVGLGNPGPQYEKTRHNVGFMVAGVLSARMG 38
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_DEHSC (Peptidyl-tRNA hydrolase OS=Dehalococcoides sp. (strain CBDB1) GN=pth PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.026e-22 Identity = 45/131 (34.35%), Postives = 66/131 (50.38%), Query Frame = 2 Query: 473 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQ---MDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856 + D ++LAKPQTYMNLSG++ L Y L ++V DD+ LP G S++ + G +EF RL+IGIG+P + + +L F RE I+TA+ E L L++ GL Sbjct: 51 INDEEIVLAKPQTYMNLSGKAVNQLLRRYNLKATDIIVVQDDLDLPAGKLRLRLGGSAGGHNGVSSIITDI-GTKEFIRLKIGIGKPDARNNGAEVVDHVLGNFGGEEREIIETAIARAAEALACLITSGL 180 HSP 2 Score: 51.2174 bits (121), Expect = 1.026e-22 Identity = 22/47 (46.81%), Postives = 29/47 (61.70%), Query Frame = 3 Query: 330 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQG 470 L +GLGNPG +Y G RHNVGF+ + FA+ IS + C + G G Sbjct: 3 LIIGLGNPGKEYSGNRHNVGFQCLSRFAKENHISFDKKCCLSRTGSG 49
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_DEHSB (Peptidyl-tRNA hydrolase OS=Dehalococcoides sp. (strain BAV1) GN=pth PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.737e-22 Identity = 45/131 (34.35%), Postives = 66/131 (50.38%), Query Frame = 2 Query: 473 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQ---MDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856 + D ++LAKPQTYMNLSG++ L Y L ++V DD+ LP G S++ + G +EF RL+IGIG+P + + +L F RE I+TA+ E L L++ GL Sbjct: 51 INDEEIVLAKPQTYMNLSGKAVNQLLRRYNLKAADIIVVQDDLDLPAGKLRLRLGGSAGGHNGVSSIITDI-GTKEFIRLKIGIGKPDARNNGAEVVDHVLGNFGGEEREIIETAIARAAEALACLITSGL 180 HSP 2 Score: 51.2174 bits (121), Expect = 1.737e-22 Identity = 22/47 (46.81%), Postives = 29/47 (61.70%), Query Frame = 3 Query: 330 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQG 470 L +GLGNPG +Y G RHNVGF+ + FA+ IS + C + G G Sbjct: 3 LIIGLGNPGKEYSGNRHNVGFQCLSRFAKENHISFDKKCCLSRTGSG 49
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_RHOE4 (Peptidyl-tRNA hydrolase OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=pth PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 3.827e-22 Identity = 40/123 (32.52%), Postives = 71/123 (57.72%), Query Frame = 2 Query: 488 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856 V+L KP++YMNLSG + LA ++ + ++V HD++ L G +S+ ++ +++ R R+GIGRPPG+MDP ++L+ F++ R+ +D +E + ++LLL GL Sbjct: 61 VILGKPRSYMNLSGGAVAGLARFFSVDAANIIVVHDELDLDFGTIRLKLGGGEGGHNGLRSISSSLT-TKDYLRTRVGIGRPPGRMDPADYVLKPFSSTERKELDLVCEEAADAVELLLELGL 182 HSP 2 Score: 41.5874 bits (96), Expect = 3.827e-22 Identity = 21/42 (50.00%), Postives = 26/42 (61.90%), Query Frame = 3 Query: 330 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKA 455 L +GLGNPG +Y+ TRHNVGF + A G N VH K+ Sbjct: 7 LVIGLGNPGPQYEKTRHNVGFMVAGTLAGRMGGKFN-VHKKS 47
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_CLONN (Peptidyl-tRNA hydrolase OS=Clostridium novyi (strain NT) GN=pth PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 3.827e-22 Identity = 40/127 (31.50%), Postives = 67/127 (52.76%), Query Frame = 2 Query: 473 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKG 853 + + V+L KP TYMNLSGES + +YK+P V+V +DD+ L G K+++ +F G+ F R+++G+G+P Q D + +L KFN RE + + + + ++ KG Sbjct: 51 IANEKVILLKPLTYMNLSGESIKEVTDFYKIPKENVIVIYDDISLEVGRMRIREKGSAGGHNGIKNIIAHF-GSDVFPRIKVGVGQPV-QRDLVSHVLGKFNKDDREILSKVFEAASDAAENIIEKG 175 HSP 2 Score: 56.225 bits (134), Expect = 3.827e-22 Identity = 24/50 (48.00%), Postives = 33/50 (66.00%), Query Frame = 3 Query: 327 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGLL 476 +L VGLGNPG +Y+ TRHNVGF++ID +E I +N K +G G + Sbjct: 2 FLIVGLGNPGKEYEHTRHNVGFDIIDVISEKYNIDLNKKKFKGMYGDGTI 51
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_HERA2 (Peptidyl-tRNA hydrolase OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=pth PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 4.964e-22 Identity = 47/124 (37.90%), Postives = 66/124 (53.23%), Query Frame = 2 Query: 488 VLLAKPQTYMNLSGESTGPLAAYYKL-PLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856 V LA+PQT+MN SG+S L +YK+ P + +LV +DD+ LP G S++ G ++FARLR GIGRPP + F+L +NA RE + VE +L LS G+ Sbjct: 56 VALARPQTFMNDSGKSVVGLVNWYKIDPASELLVVYDDLDLPFGTIKLRNQGSSGGQRGMNSIIQ-LLGTQKFARLRFGIGRPPEGWEVINFVLGNWNAAERETLPKLYDRAVEACELCLSDGV 178 HSP 2 Score: 49.2914 bits (116), Expect = 4.964e-22 Identity = 22/50 (44.00%), Postives = 30/50 (60.00%), Query Frame = 3 Query: 327 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGLL 476 +L VGLGNPG+KY RHNVGF+ + FA +S + A +GL+ Sbjct: 2 FLIVGLGNPGEKYLNNRHNVGFQCVAEFARRHHLSFDGKRSDARIAEGLV 51
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_NITOC (Peptidyl-tRNA hydrolase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=pth PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.977e-22 Identity = 40/118 (33.90%), Postives = 65/118 (55.08%), Query Frame = 2 Query: 494 LAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLS 847 L KP T+MN SG++ L YY++PL +L+ HDD+ LP GV + ++N G R+F RLR+G+G P D +++L + + R+ I+ A+ +EVL +L+ Sbjct: 63 LLKPATFMNRSGQAVLALLNYYQIPLEHLLIAHDDLDLPPGVAKLKRAGGHGGHNGLRDIINRL-GRRDFLRLRLGVGHPGSGQDVVSYVLNRPSREDRQAIEAAIGAGLEVLPEVLA 179 HSP 2 Score: 50.8322 bits (120), Expect = 4.977e-22 Identity = 21/35 (60.00%), Postives = 25/35 (71.43%), Query Frame = 3 Query: 327 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGIS 431 WL +GLGNPG +Y TRHN GF +DAFA GI+ Sbjct: 6 WLLIGLGNPGTEYAQTRHNAGFWWLDAFASELGIN 40
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_ANASK (Peptidyl-tRNA hydrolase OS=Anaeromyxobacter sp. (strain K) GN=pth PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 8.424e-22 Identity = 46/127 (36.22%), Postives = 69/127 (54.33%), Query Frame = 2 Query: 473 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKG 853 +G V + KPQTYMN SGE+ G ++KL L+ ++V HDD+ L KSV N G+ E+AR+R+G+GRPP +MDP ++L KF +D +++ VE +L + G Sbjct: 51 LGPERVWIMKPQTYMNHSGEAVGAALRFWKLGLDDLVVVHDDLELDPYRVQLKVGGGHGGHNGVKSV-NAHVGSPEYARVRVGVGRPPPRMDPADYVLGKFAKGEDAELDLCVEQAVEATRLAVELG 176 HSP 2 Score: 45.4394 bits (106), Expect = 8.424e-22 Identity = 22/49 (44.90%), Postives = 28/49 (57.14%), Query Frame = 3 Query: 330 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGLL 476 L VGLGNPG++Y TRHNVGF + D A+ G S + A + L Sbjct: 3 LVVGLGNPGEEYARTRHNVGFVVADRLAQLAGASFSAKKFAAELAEARL 51
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_ANAD2 (Peptidyl-tRNA hydrolase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=pth PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 8.424e-22 Identity = 46/127 (36.22%), Postives = 69/127 (54.33%), Query Frame = 2 Query: 473 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKG 853 +G V + KPQTYMN SGE+ G ++KL L+ ++V HDD+ L KSV N G+ E+AR+R+G+GRPP +MDP ++L KF +D +++ VE +L + G Sbjct: 51 LGPERVWIMKPQTYMNHSGEAVGAALRFWKLGLDDLVVVHDDLELDPYRVQLKVGGGHGGHNGVKSV-NAHVGSPEYARVRVGVGRPPPRMDPADYVLGKFAKGEDAELDLCVEQAVEATRLAVELG 176 HSP 2 Score: 45.4394 bits (106), Expect = 8.424e-22 Identity = 22/49 (44.90%), Postives = 28/49 (57.14%), Query Frame = 3 Query: 330 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGLL 476 L VGLGNPG++Y TRHNVGF + D A+ G S + A + L Sbjct: 3 LVVGLGNPGEEYARTRHNVGFVVADRLAQLAGASFSAKKFAAELAEARL 51 The following BLAST results are available for this feature:
BLAST of CV887372 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CV887372 ID=CV887372; Name=CV887372; organism=Citrus sinensis; type=EST; length=857bpback to top |