CV887372

Overview
NameCV887372
Unique NameCV887372
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_BDEBA (Peptidyl-tRNA hydrolase OS=Bdellovibrio bacteriovorus GN=pth PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.434e-22
Identity = 42/129 (32.56%), Postives = 68/129 (52.71%), Query Frame = 2
Query:  473 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDP-KAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856
            + D PV+  KPQTYMNLSGES  PL  +YK+PL R++V HD++  P                  KS+ +   G+ ++ RLR+G+GRP     P   ++L KF      ++   L +  + ++ ++  G+
Sbjct:   51 IKDHPVIFCKPQTYMNLSGESVQPLMGFYKIPLERLIVIHDEIDQPFAQMKIQKNRGHGGHNGIKSI-SGLMGSMDYTRLRLGVGRPANPNIPVPDYVLGKFTKEEFAQMPDFLNKAGDAVESIILDGI 178          

HSP 2 Score: 48.1358 bits (113), Expect = 8.434e-22
Identity = 20/33 (60.61%), Postives = 23/33 (69.70%), Query Frame = 3
Query:  327 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQG 425
            WL VGLGNPG +YK TRHN+GF  +D   E  G
Sbjct:    2 WLIVGLGNPGGEYKLTRHNIGFMAVDFLMEGLG 34          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_DESRM (Peptidyl-tRNA hydrolase OS=Desulfotomaculum reducens (strain MI-1) GN=pth PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.093e-21
Identity = 49/128 (38.28%), Postives = 71/128 (55.47%), Query Frame = 2
Query:  473 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPP-GQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKG 853
            +G   V+LAKPQTYMNLSG+S   L  +YKL  + + V  DDM LP GV               K+++    G ++F R+R+GIGRP  G +D    +L K +    E I+ A+Q  VE +K+ + +G
Sbjct:   51 IGSEKVILAKPQTYMNLSGQSVVALMNWYKLSPDELFVITDDMDLPPGVLRIRKNGSAGGQRGLKNII-ELLGTQQFPRMRVGIGRPEHGAVD---HVLGKISEAEAELINPAIQTAVEAVKVWVLEG 174          

HSP 2 Score: 45.8246 bits (107), Expect = 1.093e-21
Identity = 22/46 (47.83%), Postives = 27/46 (58.70%), Query Frame = 3
Query:  330 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQ 467
            L VGLGNPG +Y  TRHN+GF +ID  A+   +S      KA   Q
Sbjct:    3 LIVGLGNPGTEYAKTRHNIGFMVIDRLADESRVSTEKNQHKAQICQ 48          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_ANADE (Peptidyl-tRNA hydrolase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=pth PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.096e-21
Identity = 46/127 (36.22%), Postives = 69/127 (54.33%), Query Frame = 2
Query:  473 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKG 853
            +G   V + KPQTYMN SGE+ G    ++KL L+ ++V HDD+ L                   KSV N   G+ E+AR+R+G+GRPP +MDP  ++L KF       +D  +++ VE  +L +  G
Sbjct:   51 LGPERVWILKPQTYMNHSGEAVGAALRFWKLGLDDLVVVHDDLELEPFRVQLKVGGGHGGHNGVKSV-NAHVGSPEYARVRVGVGRPPPRMDPADYVLGKFAKGEDAELDLCVEQAVEATRLAVELG 176          

HSP 2 Score: 45.0542 bits (105), Expect = 1.096e-21
Identity = 22/49 (44.90%), Postives = 27/49 (55.10%), Query Frame = 3
Query:  330 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGLL 476
            L VGLGNPG++Y  TRHNVGF + D  A+  G S       A   +  L
Sbjct:    3 LVVGLGNPGEEYARTRHNVGFVVADRLAQLAGASFTAKKFAAELAEARL 51          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_RENSM (Peptidyl-tRNA hydrolase OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=pth PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.425e-21
Identity = 40/129 (31.01%), Postives = 70/129 (54.26%), Query Frame = 2
Query:  473 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPP-GQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856
            +G   ++LAKPQT+MNLSG  T  LA +Y L  + V+   D++ +P                  + + +   G +E+ R+R+G+GRPP GQ D    +L+ F+   ++ +   +Q+  + ++LL+S GL
Sbjct:   56 MGGPKLVLAKPQTFMNLSGGPTSALAKFYDLGADNVIAVQDEIDIPFNTIKLKIGGGEGGHNGLRDI-SKALGAKEYLRVRVGVGRPPGGQGDAAGHVLKVFSTAEKKELPFLIQDAADAVELLISDGL 183          

HSP 2 Score: 49.2914 bits (116), Expect = 1.425e-21
Identity = 23/56 (41.07%), Postives = 31/56 (55.36%), Query Frame = 3
Query:  315 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGLLVM 482
            ++  WL VGLGNPG  Y  TRHN+GF + +  A   G S  +   +A   +G L M
Sbjct:    1 MSNTWLVVGLGNPGPDYSHTRHNIGFMVAEELASRIGASFKSNKSRALVAEGRLGM 56          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_DEHE1 (Peptidyl-tRNA hydrolase OS=Dehalococcoides ethenogenes (strain 195) GN=pth PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.427e-21
Identity = 45/131 (34.35%), Postives = 65/131 (49.62%), Query Frame = 2
Query:  473 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQ---MDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856
            + D  ++LAKPQTYMNLSG++   L   Y L    ++V  DD+ LP G                 S++ +  G +EF RL+IGIG+P  +    +    +L  F    RE +D A+    E L  LL+ GL
Sbjct:   51 INDEEIVLAKPQTYMNLSGKAASQLLRRYNLKAADIIVVQDDLDLPAGKIRLRLGGSAGGHNGISSIITDI-GTKEFIRLKIGIGKPDSRNNGTEVVDHVLGNFGGEEREIMDKAITRASEALTCLLTFGL 180          

HSP 2 Score: 51.2174 bits (121), Expect = 1.427e-21
Identity = 22/47 (46.81%), Postives = 29/47 (61.70%), Query Frame = 3
Query:  330 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQG 470
            L +GLGNPG +Y G RHNVGF+ +  FA+   IS +   C +  G G
Sbjct:    3 LIIGLGNPGKEYSGNRHNVGFQCLSRFAKDNHISFDKKCCLSRTGSG 49          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_STRCO (Peptidyl-tRNA hydrolase OS=Streptomyces coelicolor GN=pth PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.852e-21
Identity = 42/148 (28.38%), Postives = 75/148 (50.68%), Query Frame = 2
Query:  428 FYEHGSLQSYFRTRFVG-----DAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856
            F  HG  Q+      +G     +  V+LAKP ++MN+SG     L  +YK+P+  ++  HD++ +  GV               KS+  +     ++ R+R GIGRPPG+M    F+L+ F++  R+ +D  +    + ++ L+ +GL
Sbjct:   46 FKRHGKAQAQVVEGRIGPPGPANRRVILAKPMSFMNVSGGPVTALRDFYKVPVGNIVAVHDELDIDYGVLRLKLGGGDNGHNGLKSITKSL--GADYHRVRFGIGRPPGRMPVADFVLRDFSSTERKELDYFVDRAADAVEALVIEGL 191          

HSP 2 Score: 48.1358 bits (113), Expect = 1.852e-21
Identity = 21/39 (53.85%), Postives = 23/39 (58.97%), Query Frame = 3
Query:  309 TAVARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQG 425
            T    PWL  GLGNPG +Y   RHNVGF + D  AE  G
Sbjct:    5 TDAGAPWLVAGLGNPGPEYASNRHNVGFMVADLLAERIG 43          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_ARTCA (Peptidyl-tRNA hydrolase OS=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=pth PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.854e-21
Identity = 38/128 (29.69%), Postives = 66/128 (51.56%), Query Frame = 2
Query:  473 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856
            +G   V+LAKP TYMN+SG     LA +Y +  + V+  HD++ +P                  + +       +++ R+R+G+GRPPG+MD   ++L+ F     + +   L E  + ++LLL +GL
Sbjct:   56 IGGPRVVLAKPMTYMNVSGGPVSALANFYGISPDHVVAVHDEIDIPFNTVKLKIGGGEGGHNGLRDISKAL-ATKDYLRVRVGVGRPPGRMDTADYVLRDFGTAELKELPFLLDEAADAVELLLQEGL 182          

HSP 2 Score: 47.3654 bits (111), Expect = 1.854e-21
Identity = 22/50 (44.00%), Postives = 29/50 (58.00%), Query Frame = 3
Query:  327 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGLL 476
            WL VGLGNPG +Y+G RHNVG  ++D  A   G    +   +A   +G L
Sbjct:    5 WLIVGLGNPGAQYQGNRHNVGQMVLDELAGRVGAGFKSHKARAQVVEGRL 54          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_SYNAS (Peptidyl-tRNA hydrolase OS=Syntrophus aciditrophicus (strain SB) GN=pth PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.854e-21
Identity = 39/96 (40.62%), Postives = 57/96 (59.38%), Query Frame = 2
Query:  488 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKF 775
            VLLAKPQT+MNLSG+S   LA ++K+ +  VLV HDD+ LP GV                S+ ++  G  EF R+R+GIG+P  +   + ++L+ F
Sbjct:   56 VLLAKPQTFMNLSGKSVRKLADFFKIVVEDVLVVHDDLDLPFGVIRLKAGGGQGGHKGLISICDSL-GGPEFQRVRLGIGKPAQRSAVERYVLEPF 150          

HSP 2 Score: 52.7582 bits (125), Expect = 1.854e-21
Identity = 24/49 (48.98%), Postives = 33/49 (67.35%), Query Frame = 3
Query:  330 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGLL 476
            L VGLGNPG +Y+ TRHN GF ++D  AE Q I M+     A +G+G++
Sbjct:    3 LIVGLGNPGARYRFTRHNFGFFVLDQLAEDQDIMMSQTGFDALWGKGVI 51          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_MOOTA (Peptidyl-tRNA hydrolase OS=Moorella thermoacetica (strain ATCC 39073) GN=pth PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.856e-21
Identity = 45/127 (35.43%), Postives = 63/127 (49.61%), Query Frame = 2
Query:  473 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKG 853
            VG+  VLL KPQTYMN SG++  PLA +Y +    +LV HDD+ L  G                +S++ +  G     RL+IGIGRPP   +   ++L+ F+    E I   L E     + LL  G
Sbjct:   54 VGNNRVLLVKPQTYMNNSGQAVAPLARWYGIAPEAILVIHDDLDLAPGRLRLRRGGSSGGHRGLQSIITHL-GTTAVPRLKIGIGRPPLGQNVIDYVLKPFSEGDWELIRPVLLEAARAARFLLEGG 179          

HSP 2 Score: 52.7582 bits (125), Expect = 1.856e-21
Identity = 23/49 (46.94%), Postives = 33/49 (67.35%), Query Frame = 3
Query:  330 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGLL 476
            + VGLGNPG +Y  TRHN GF ++D  A+  GI+++    +A  GQGL+
Sbjct:    6 MVVGLGNPGPRYATTRHNAGFMVVDLLADDLGITLDRTREQALTGQGLV 54          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_MANSM (Peptidyl-tRNA hydrolase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=pth PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.412e-21
Identity = 45/128 (35.16%), Postives = 65/128 (50.78%), Query Frame = 2
Query:  473 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856
            +G   V    P T+MNLSG++ G LA +Y++    +LV HD++ LP GV               K  +     N+ F RLRIGIG P  +    A++L K + I R  ID AL E    +++LL  G+
Sbjct:   55 IGGEEVRFLIPTTFMNLSGKAVGALATFYRIKPEEILVIHDELDLPPGVAKIKQGGGHGGHNGLKDTIAQLANNKNFYRLRIGIGHPGDKNLVSAYVLSKPSPIDRSAIDKALDEAASCMEILLKDGI 182          

HSP 2 Score: 40.4318 bits (93), Expect = 2.412e-21
Identity = 17/28 (60.71%), Postives = 20/28 (71.43%), Query Frame = 3
Query:  330 LFVGLGNPGDKYKGTRHNVGFEMIDAFA 413
            L VGLGNPGDKY  TRHN G  +++  A
Sbjct:    6 LIVGLGNPGDKYADTRHNAGEWLVERLA 33          
The following BLAST results are available for this feature:
BLAST of CV887372 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PTH_BDEBA8.434e-2232.56Peptidyl-tRNA hydrolase OS=Bdellovibrio bacteriovo... [more]
PTH_DESRM1.093e-2138.28Peptidyl-tRNA hydrolase OS=Desulfotomaculum reduce... [more]
PTH_ANADE1.096e-2136.22Peptidyl-tRNA hydrolase OS=Anaeromyxobacter dehalo... [more]
PTH_RENSM1.425e-2131.01Peptidyl-tRNA hydrolase OS=Renibacterium salmonina... [more]
PTH_DEHE11.427e-2134.35Peptidyl-tRNA hydrolase OS=Dehalococcoides ethenog... [more]
PTH_STRCO1.852e-2128.38Peptidyl-tRNA hydrolase OS=Streptomyces coelicolor... [more]
PTH_ARTCA1.854e-2129.69Peptidyl-tRNA hydrolase OS=Arthrobacter chlorophen... [more]
PTH_SYNAS1.854e-2140.63Peptidyl-tRNA hydrolase OS=Syntrophus aciditrophic... [more]
PTH_MOOTA1.856e-2135.43Peptidyl-tRNA hydrolase OS=Moorella thermoacetica ... [more]
PTH_MANSM2.412e-2135.16Peptidyl-tRNA hydrolase OS=Mannheimia succinicipro... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_030H06_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T3_H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887372 ID=CV887372; Name=CV887372; organism=Citrus sinensis; type=EST; length=857bp
AGAGAACGACACATTCACTCACACACGTCCTCTCTGCAGCCACAGCCGCC
GCTTACAAACGCCCCTCTAACCCTAAGCTGACAAACGCCCACGCCCACGC
CCACGCTGCCGGCGCTGTCACTTTGGTTCAAGTGTGCCGACGCTGCAGCT
TCTAGCCGTTCTCGATTTGCTTCCTCGTTCCAGCTGCTGCGCTGCCTCCG
GCTTCGTTCGCCGTCGTCAGCCGTCGTCAGCCGCACAAGTGAAGTGGAAG
GAAACTGAGAACATTTGAGGAGATGCTTATTAACAGGTTTCTGAGGCGTG
GTTTCTGCACTGCTGTTGCTCGGCCATGGCTTTTTGTGGGGTTGGGTAAC
CCGGGAGATAAATACAAAGGAACTAGACACAATGTGGGGTTTGAGATGAT
CGACGCATTTGCTGAATCACAAGGGATTTCTATGAACACGGTTCATTGCA
AAGCTACTTTCGGACAAGGTTTGTTGGTGATGCCCCTGTACTCCTTGCAA
AGCCACAGACTTACATGAATCTGAGCGGTGAATCTACTGGACCACTTGCA
GCTTATTATAAGTTACCTCTTAATCGTGTTCTTGTGTTTCATGATGACAT
GGGCTTACCTTGTGGAGTGCTTCGTCTGCGCCACAATGGAGGTCATGGAG
GCCACAATGGGCTGAAGAGTGTGATGAACAACTTTCGAGGTAACCGAGAA
TTTGCTCGGCTAAGAATTGGTATTGGGAGGCCTCCTGGTCAAATGGATCC
TAAAGCTTTCTTGCTGCAGAAGTTTAATGCAATAGCTCGAGAGCGAATTG
ATACTGCTTTGCAAGAAAGGGTTGAGGTTCTGAAGCTGCTTTTATCTAAA
GGCTTGA
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