CV887372

Overview
NameCV887372
Unique NameCV887372
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_CLOB8 (Peptidyl-tRNA hydrolase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=pth PE=3 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 1.980e-20
Identity = 40/126 (31.75%), Postives = 64/126 (50.79%), Query Frame = 2
Query:  470 FVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKF----NAIARERIDTALQERVEVLK 835
            F+    V+L KP TYMNLSGES   +  +Y L  + +LV +DD+ L  G                KS++ +   +  F+R+++G+G+P G  D    +L KF     AI  E I+ + +   E++K
Sbjct:   50 FINGKKVMLLKPTTYMNLSGESVREVVDFYNLNNDEILVIYDDISLEVGKLRIREKGSAGGHNGIKSIIAHL-NSEIFSRIKVGVGQPNG--DLVKHVLGKFTKEETAILSESIEASTKAAAEIIK 172          

HSP 2 Score: 56.6102 bits (135), Expect = 1.980e-20
Identity = 23/50 (46.00%), Postives = 35/50 (70.00%), Query Frame = 3
Query:  327 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGLL 476
            +L VGLGNPG++Y+ TRHN+GF++ID  A+   I +N    K  +G+G +
Sbjct:    2 FLIVGLGNPGNEYENTRHNIGFKVIDNIAKEYNIEINRQKFKGMYGEGFI 51          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_GLOVI (Peptidyl-tRNA hydrolase OS=Gloeobacter violaceus GN=pth PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.572e-20
Identity = 45/122 (36.89%), Postives = 68/122 (55.74%), Query Frame = 2
Query:  491 LLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856
            +L KP TYMN SG+S   +A Y++LP  ++LV +D++ LP G                KS++ +  G  +FARLRIGIGR P       ++L KF    +E++   L   VE ++ +L+KGL
Sbjct:   60 ILLKPTTYMNHSGQSVRAVADYFRLPPQQLLVLYDEVALPLGKIRLRPEGSAAGHNGIKSLIEHL-GTNQFARLRIGIGREPPPPVLTNYVLGKFAPEEQEQLPAILDGCVEAVEAVLAKGL 180          

HSP 2 Score: 43.1282 bits (100), Expect = 2.572e-20
Identity = 19/29 (65.52%), Postives = 22/29 (75.86%), Query Frame = 3
Query:  330 LFVGLGNPGDKYKGTRHNVGFEMIDAFAE 416
            LFVGLGNPG +Y  TRHN GF  +DA A+
Sbjct:    5 LFVGLGNPGLQYTQTRHNAGFLAVDALAK 33          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_CLOBB (Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=pth PE=3 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 2.575e-20
Identity = 38/126 (30.16%), Postives = 65/126 (51.59%), Query Frame = 2
Query:  470 FVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFN----AIARERIDTALQERVEVLK 835
            F+ +  V+L KP TYMNLSG+S   +A +YK+    ++V +DD+ L  G                KS++ N      F R+++G+G+P   +D   ++L KF+     + +E I+ A     E++K
Sbjct:   50 FIANNKVILLKPTTYMNLSGDSVREVANFYKISNENIIVIYDDISLDIGRLRIREKGSAGGHNGIKSIIANL-STDVFPRIKVGVGQP--NIDLVNYVLGKFSKEEKEVLKESIEVATNSVEEIIK 172          

HSP 2 Score: 56.225 bits (134), Expect = 2.575e-20
Identity = 23/50 (46.00%), Postives = 32/50 (64.00%), Query Frame = 3
Query:  327 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGLL 476
            +L VGLGNPG KY  TRHN+GFE+ID  +    I +N    +  +G+G +
Sbjct:    2 FLIVGLGNPGSKYDNTRHNIGFEVIDNISNEYNIDINRQKFRGVYGEGFI 51          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_CLOPE (Peptidyl-tRNA hydrolase OS=Clostridium perfringens GN=pth PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.352e-20
Identity = 39/114 (34.21%), Postives = 62/114 (54.39%), Query Frame = 2
Query:  470 FVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTAL 811
            F+ +  V+L KP TYMNLSGES   LA +YKL  + ++V +DD+ L  G                KS++ N  G++ F R+++G+G+P   +     +L KF+   RE I+  +
Sbjct:   50 FIENKKVILLKPLTYMNLSGESIRELANFYKLEDDEIIVVYDDISLDIGRLRIREKGSAGGHNGIKSIIQNLGGDK-FPRVKVGVGQPKDNL--VNHVLGKFSKEDREHIEKVI 160          

HSP 2 Score: 52.7582 bits (125), Expect = 3.352e-20
Identity = 23/49 (46.94%), Postives = 31/49 (63.27%), Query Frame = 3
Query:  330 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGLL 476
            L VGLGNPG +Y+ TRHN+GF++ID  A    I +N    K   G+G +
Sbjct:    3 LIVGLGNPGKQYEQTRHNIGFDVIDYMANKYNIDVNREKFKGICGEGFI 51          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_CLOP1 (Peptidyl-tRNA hydrolase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=pth PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.352e-20
Identity = 39/114 (34.21%), Postives = 62/114 (54.39%), Query Frame = 2
Query:  470 FVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTAL 811
            F+ +  V+L KP TYMNLSGES   LA +YKL  + ++V +DD+ L  G                KS++ N  G++ F R+++G+G+P   +     +L KF+   RE I+  +
Sbjct:   50 FIENKKVILLKPLTYMNLSGESIRELANFYKLEDDEIIVVYDDISLDIGRLRIREKGSAGGHNGIKSIIQNLGGDK-FPRVKVGVGQPKDNL--VNHVLGKFSKEDREHIEKVI 160          

HSP 2 Score: 52.7582 bits (125), Expect = 3.352e-20
Identity = 23/49 (46.94%), Postives = 31/49 (63.27%), Query Frame = 3
Query:  330 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGLL 476
            L VGLGNPG +Y+ TRHN+GF++ID  A    I +N    K   G+G +
Sbjct:    3 LIVGLGNPGKQYEQTRHNIGFDVIDYMANKYNIDVNREKFKGICGEGFI 51          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH1_CORJK (Peptidyl-tRNA hydrolase 1 OS=Corynebacterium jeikeium (strain K411) GN=pth1 PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.358e-20
Identity = 36/96 (37.50%), Postives = 57/96 (59.38%), Query Frame = 2
Query:  488 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKF 775
            V+LA+P+T+MN+SG     LAA++K+P   ++V +DD+    G                KS+  +  G +++ RL  GIGRPPG+MDP A++L+ F
Sbjct:   72 VVLAQPRTFMNVSGGPVQQLAAFFKIPAENIIVAYDDLEGDPGAVKLRQSGGDKGHNGLKSITKSL-GTKDYWRLSCGIGRPPGRMDPAAYVLKPF 166          

HSP 2 Score: 47.3654 bits (111), Expect = 4.358e-20
Identity = 23/40 (57.50%), Postives = 26/40 (65.00%), Query Frame = 3
Query:  327 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQ--GISMNT 440
            WL VGLGNPGDKY  TRHNVG  +I    + Q    S+NT
Sbjct:   15 WLIVGLGNPGDKYANTRHNVGRMVIGELLDRQVPAASLNT 54          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_CLOBA (Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=pth PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 4.358e-20
Identity = 37/126 (29.37%), Postives = 64/126 (50.79%), Query Frame = 2
Query:  470 FVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFN----AIARERIDTALQERVEVLK 835
            F+ +  V+L KP TYMNLSG+S   +A +YK+    ++V +DD+ L  G                KS++ N      F R+++G+G+P   +    ++L KF+     + +E I+ A     E++K
Sbjct:   50 FIANNKVILLKPTTYMNLSGDSVREVANFYKISNENIIVIYDDISLDIGRLRIREKGSAGGHNGIKSIIANL-STDVFPRIKVGVGQPNDNL--VDYVLGKFSKEEKEVLKESIEAATNSVEEIIK 172          

HSP 2 Score: 57.3806 bits (137), Expect = 4.358e-20
Identity = 24/50 (48.00%), Postives = 32/50 (64.00%), Query Frame = 3
Query:  327 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGLL 476
            +L VGLGNPG KY  TRHN+GFE+ID  +    I +N    K  +G+G +
Sbjct:    2 FLIVGLGNPGSKYDNTRHNIGFEVIDNISNEYNIDINRQKFKGVYGEGFI 51          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_THETN (Peptidyl-tRNA hydrolase OS=Thermoanaerobacter tengcongensis GN=pth PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 4.363e-20
Identity = 39/123 (31.71%), Postives = 63/123 (51.22%), Query Frame = 2
Query:  488 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856
            V+L KPQT+MNLSGE+      +YK+PL  V+V +DD  L  G                 S++     + +F R+RIGIG+P    D    +L +F+   ++ ID A++   E +  ++  G+
Sbjct:   56 VILLKPQTFMNLSGEALYDAVNFYKIPLENVIVVYDDKDLEVGKIRIRRKGSSGGHNGMNSII-YLLNSEDFPRVRIGIGKPE-DGDLVRHVLGRFSDEEKKVIDEAVERAAEAVIDIMENGI 176          

HSP 2 Score: 56.225 bits (134), Expect = 4.363e-20
Identity = 23/48 (47.92%), Postives = 35/48 (72.92%), Query Frame = 3
Query:  327 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQG 470
            ++  GLGNPG +Y+GTRHNVGF +IDA ++  GI ++ +  K+  G+G
Sbjct:    2 YIIAGLGNPGKEYEGTRHNVGFMVIDALSKKLGIEVSRLKFKSLMGEG 49          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_ALKMQ (Peptidyl-tRNA hydrolase OS=Alkaliphilus metalliredigens (strain QYMF) GN=pth PE=3 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 4.363e-20
Identity = 26/47 (55.32%), Postives = 35/47 (74.47%), Query Frame = 3
Query:  327 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQ 467
            ++ VGLGNPG KY GTRHNVGF++ID  A   GI++N +  KA +G+
Sbjct:    2 YIIVGLGNPGKKYSGTRHNVGFDVIDLLAHRLGITVNKLKHKALYGE 48          

HSP 2 Score: 58.5362 bits (140), Expect = 4.363e-20
Identity = 31/87 (35.63%), Postives = 47/87 (54.02%), Query Frame = 2
Query:  473 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRP 733
            +G   V+LAKPQT+MNLSGES   +  +YK+    ++V +DD+ +  G                KS +   + +  F R+RIG+GRP
Sbjct:   51 IGGEKVILAKPQTFMNLSGESIREMMQFYKIDPENLIVIYDDIDVKVGSLRIRQSGSAGTHNGMKSTIYQLQTD-AFPRIRIGVGRP 136          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_SULSY (Peptidyl-tRNA hydrolase OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=pth PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 5.672e-20
Identity = 42/126 (33.33%), Postives = 64/126 (50.79%), Query Frame = 2
Query:  479 DAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856
            D  V++AKPQTYMNLSG +   +   YK+  + +LV +DD+ LP G                KS++N  +   EF RL+IGIGRP  + +   ++L  F    +  +D  L    E +  +L  G+
Sbjct:   53 DYDVIIAKPQTYMNLSGNAVLNILKDYKIKPSEILVVYDDLDLPLGAVRLRLKGSSGGHNGIKSIINTIK-TEEFPRLKIGIGRPEKKEEVSDYVLSPFTKEEKFLLDKVLAHANECILNVLKYGI 177          

HSP 2 Score: 46.2098 bits (108), Expect = 5.672e-20
Identity = 19/28 (67.86%), Postives = 23/28 (82.14%), Query Frame = 3
Query:  336 VGLGNPGDKYKGTRHNVGFEMIDAFAES 419
            +GLGNPG+KYK TRHNVGF + D  A+S
Sbjct:    6 IGLGNPGEKYKNTRHNVGFMVADLVAKS 33          
The following BLAST results are available for this feature:
BLAST of CV887372 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PTH_CLOB81.980e-2031.75Peptidyl-tRNA hydrolase OS=Clostridium beijerincki... [more]
PTH_GLOVI2.572e-2036.89Peptidyl-tRNA hydrolase OS=Gloeobacter violaceus G... [more]
PTH_CLOBB2.575e-2030.16Peptidyl-tRNA hydrolase OS=Clostridium botulinum (... [more]
PTH_CLOPE3.352e-2034.21Peptidyl-tRNA hydrolase OS=Clostridium perfringens... [more]
PTH_CLOP13.352e-2034.21Peptidyl-tRNA hydrolase OS=Clostridium perfringens... [more]
PTH1_CORJK4.358e-2037.50Peptidyl-tRNA hydrolase 1 OS=Corynebacterium jeike... [more]
PTH_CLOBA4.358e-2029.37Peptidyl-tRNA hydrolase OS=Clostridium botulinum (... [more]
PTH_THETN4.363e-2031.71Peptidyl-tRNA hydrolase OS=Thermoanaerobacter teng... [more]
PTH_ALKMQ4.363e-2055.32Peptidyl-tRNA hydrolase OS=Alkaliphilus metallired... [more]
PTH_SULSY5.672e-2033.33Peptidyl-tRNA hydrolase OS=Sulfurihydrogenibium sp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_030H06_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T3_H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887372 ID=CV887372; Name=CV887372; organism=Citrus sinensis; type=EST; length=857bp
AGAGAACGACACATTCACTCACACACGTCCTCTCTGCAGCCACAGCCGCC
GCTTACAAACGCCCCTCTAACCCTAAGCTGACAAACGCCCACGCCCACGC
CCACGCTGCCGGCGCTGTCACTTTGGTTCAAGTGTGCCGACGCTGCAGCT
TCTAGCCGTTCTCGATTTGCTTCCTCGTTCCAGCTGCTGCGCTGCCTCCG
GCTTCGTTCGCCGTCGTCAGCCGTCGTCAGCCGCACAAGTGAAGTGGAAG
GAAACTGAGAACATTTGAGGAGATGCTTATTAACAGGTTTCTGAGGCGTG
GTTTCTGCACTGCTGTTGCTCGGCCATGGCTTTTTGTGGGGTTGGGTAAC
CCGGGAGATAAATACAAAGGAACTAGACACAATGTGGGGTTTGAGATGAT
CGACGCATTTGCTGAATCACAAGGGATTTCTATGAACACGGTTCATTGCA
AAGCTACTTTCGGACAAGGTTTGTTGGTGATGCCCCTGTACTCCTTGCAA
AGCCACAGACTTACATGAATCTGAGCGGTGAATCTACTGGACCACTTGCA
GCTTATTATAAGTTACCTCTTAATCGTGTTCTTGTGTTTCATGATGACAT
GGGCTTACCTTGTGGAGTGCTTCGTCTGCGCCACAATGGAGGTCATGGAG
GCCACAATGGGCTGAAGAGTGTGATGAACAACTTTCGAGGTAACCGAGAA
TTTGCTCGGCTAAGAATTGGTATTGGGAGGCCTCCTGGTCAAATGGATCC
TAAAGCTTTCTTGCTGCAGAAGTTTAATGCAATAGCTCGAGAGCGAATTG
ATACTGCTTTGCAAGAAAGGGTTGAGGTTCTGAAGCTGCTTTTATCTAAA
GGCTTGA
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