CV887372

Overview
NameCV887372
Unique NameCV887372
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_CLOBK (Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Okra / Type B1) GN=pth PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 5.672e-20
Identity = 37/113 (32.74%), Postives = 59/113 (52.21%), Query Frame = 2
Query:  473 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTAL 811
            +G+  ++L KP TYMNLSGES    A +YK+    ++V +DDM +  G                K+++ +   +  F R+R+GIG+P   +    ++L KF+   RE ID  L
Sbjct:   51 IGNEKIILLKPSTYMNLSGESVIEAANFYKIDKENIIVIYDDMSIDIGKLRVRGKGSAGGHNGIKNIIQHLNSD-IFPRVRVGIGQPDENV--VNYVLGKFSKDQREIIDKVL 160          

HSP 2 Score: 54.6842 bits (130), Expect = 5.672e-20
Identity = 23/48 (47.92%), Postives = 33/48 (68.75%), Query Frame = 3
Query:  327 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQG 470
            +L VGLGN G +YK TRHN+GF+++D  AE   I +N    K ++G+G
Sbjct:    2 YLVVGLGNIGKEYKKTRHNIGFDVVDIIAEKYNIEINRQKFKGSYGEG 49          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_SYNJB (Peptidyl-tRNA hydrolase OS=Synechococcus sp. GN=pth PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.332e-20
Identity = 43/121 (35.54%), Postives = 62/121 (51.24%), Query Frame = 2
Query:  494 LAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856
            L KP+TYMN SG+S   +  +YKL L  VLV +DDM LP G                KS++ +  G+  F RLR+G+G+P G  D    +L  F    +E ++  L   VE ++    +GL
Sbjct:   72 LLKPETYMNRSGQSVRAVLDWYKLDLASVLVVYDDMDLPLGRLRLRGSGSAGGHNGMKSIIQHL-GSEAFPRLRLGVGKPKGSQDVVGHVLGGFAPAEQEVLERVLDVAVEAVECCWQEGL 191          

HSP 2 Score: 44.669 bits (104), Expect = 7.332e-20
Identity = 19/35 (54.29%), Postives = 24/35 (68.57%), Query Frame = 3
Query:  330 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISM 434
            L VGLGNPG +Y  TRHN GF ++D  A+  GI +
Sbjct:   16 LVVGLGNPGPQYANTRHNCGFMVVDRLAQRWGIPL 50          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_DESVV (Peptidyl-tRNA hydrolase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=pth PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.360e-20
Identity = 41/126 (32.54%), Postives = 69/126 (54.76%), Query Frame = 2
Query:  476 GDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKG 853
            G AP LLAKPQT+MNLSGE+   +A++Y++    ++V HD++ LP G                KS+     G  +F RLR+GIG+PP   +   ++L +F+      +D  L+  ++ ++   ++G
Sbjct:   64 GQAPWLLAKPQTFMNLSGEAVLAIASFYRVKPAAMVVAHDELDLPLGRMRFKMGGGNAGHNGLKSI-TQCLGTPDFHRLRLGIGKPPAGGETTGWVLGRFSQSDTAMVDAVLEAAIQGIRTFATEG 188          

HSP 2 Score: 41.5874 bits (96), Expect = 7.360e-20
Identity = 18/29 (62.07%), Postives = 20/29 (68.97%), Query Frame = 3
Query:  330 LFVGLGNPGDKYKGTRHNVGFEMIDAFAE 416
            L +GLGNPG +Y  TRHN GF  IDA  E
Sbjct:    6 LIIGLGNPGREYDRTRHNFGFMFIDALLE 34          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_DESVH (Peptidyl-tRNA hydrolase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=pth PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.360e-20
Identity = 41/126 (32.54%), Postives = 69/126 (54.76%), Query Frame = 2
Query:  476 GDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKG 853
            G AP LLAKPQT+MNLSGE+   +A++Y++    ++V HD++ LP G                KS+     G  +F RLR+GIG+PP   +   ++L +F+      +D  L+  ++ ++   ++G
Sbjct:   64 GQAPWLLAKPQTFMNLSGEAVLAIASFYRVKPAAMVVAHDELDLPLGRMRFKMGGGNAGHNGLKSI-TQCLGTPDFHRLRLGIGKPPAGGETTGWVLGRFSQSDTAMVDAVLEAAIQGIRTFATEG 188          

HSP 2 Score: 41.5874 bits (96), Expect = 7.360e-20
Identity = 18/29 (62.07%), Postives = 20/29 (68.97%), Query Frame = 3
Query:  330 LFVGLGNPGDKYKGTRHNVGFEMIDAFAE 416
            L +GLGNPG +Y  TRHN GF  IDA  E
Sbjct:    6 LIIGLGNPGREYDRTRHNFGFMFIDALLE 34          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_DESVM (Peptidyl-tRNA hydrolase OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=pth PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 7.360e-20
Identity = 41/123 (33.33%), Postives = 67/123 (54.47%), Query Frame = 2
Query:  485 PVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKG 853
            P L+AKPQT+MNLSGE+   +A+YY++  + +LV HD++ +P G                KS+     G  +F RLR+GIGR P   +   ++L + +   +  +DT L   V+ + +  S+G
Sbjct:   67 PWLVAKPQTFMNLSGEAVLAIASYYRIKPDAILVVHDELDIPLGRMKFKTGGGNAGHNGLKSI-TQLLGTPDFHRLRLGIGRSPHGGETTNWVLGRLSGPEQTLLDTLLPAAVQAMTIFASQG 188          

HSP 2 Score: 43.5134 bits (101), Expect = 7.360e-20
Identity = 18/30 (60.00%), Postives = 23/30 (76.67%), Query Frame = 3
Query:  330 LFVGLGNPGDKYKGTRHNVGFEMIDAFAES 419
            L VGLGNPG +Y+ TRHN+GF  +DA  E+
Sbjct:    6 LIVGLGNPGKEYERTRHNLGFMAVDALMEA 35          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_MYXXD (Peptidyl-tRNA hydrolase OS=Myxococcus xanthus (strain DK 1622) GN=pth PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.373e-20
Identity = 43/129 (33.33%), Postives = 68/129 (52.71%), Query Frame = 2
Query:  488 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKA------FLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856
            VL  +PQT+MNLSG S    A ++K+P+  VLV HD++ LP G                KS++++  G+  F RLR GIG+P G   P A      ++L  F+   R  +D  +   +++ +L + +GL
Sbjct:   56 VLFVEPQTFMNLSGRSVAEAARFFKVPVADVLVIHDELDLPLGRLQLKAGGGSGGHNGLKSIVSSL-GDESFIRLRFGIGKPEG---PNARERVSDYVLSNFDDGERREMDALIDRAMDMTELWIREGL 180          

HSP 2 Score: 45.0542 bits (105), Expect = 7.373e-20
Identity = 21/49 (42.86%), Postives = 28/49 (57.14%), Query Frame = 3
Query:  330 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGLL 476
            L VGLGNPG +Y+  RHN+GF +++A        +N     A  GQG L
Sbjct:    3 LIVGLGNPGREYERHRHNIGFMVVEALLSRARAQLNQEKFAAKVGQGTL 51          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_EUBR3 (Peptidyl-tRNA hydrolase OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=pth PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 7.382e-20
Identity = 38/120 (31.67%), Postives = 63/120 (52.50%), Query Frame = 2
Query:  488 VLLAKPQTYMNLSGESTGPLAAYYKL-PLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLL 844
            VLL KPQTYMNLSGES   +  +YKL P   ++V  DD+ L  G                KS++    G + F+R+++G+G  P   D    +L +F++  R +++ A+   ++   L++
Sbjct:   56 VLLVKPQTYMNLSGESVAEVMNFYKLDPDEEMIVIFDDISLEPGRIRIRKKGSAGGHNGIKSII-AMTGTQGFSRIKVGVGEKPQGWDLADHVLGRFSSEDRAKVEEAIGHAMDAAVLMM 174          

HSP 2 Score: 54.299 bits (129), Expect = 7.382e-20
Identity = 24/50 (48.00%), Postives = 34/50 (68.00%), Query Frame = 3
Query:  327 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGLL 476
            ++ VGLGNP  KY+ TRHN+GF++IDA A+   IS+     KA  G G++
Sbjct:    2 YVIVGLGNPDKKYEHTRHNIGFDVIDALADKYNISVTDKKHKALCGSGVI 51          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_DESDA (Peptidyl-tRNA hydrolase OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=pth PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.532e-20
Identity = 43/122 (35.25%), Postives = 63/122 (51.64%), Query Frame = 2
Query:  491 LLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856
            L AKPQT+MNLSG+   PL +++KL    ++V HD++ +P G                KS+     G  +F RLR+GIGRPP + D   ++L +      E +D  L   ++VL     KGL
Sbjct:   67 LAAKPQTFMNLSGQCVQPLLSWHKLKAADLVVAHDELDIPPGELRFKFGGGNAGHNGLKSI-TELLGTPDFYRLRMGIGRPPHKGDVTNWVLGRPQGEDAENLDHILPLALDVLFAFADKGL 187          

HSP 2 Score: 47.7506 bits (112), Expect = 9.532e-20
Identity = 19/29 (65.52%), Postives = 24/29 (82.76%), Query Frame = 3
Query:  330 LFVGLGNPGDKYKGTRHNVGFEMIDAFAE 416
            + VGLGNPG +Y+GTRHN GF +IDAF +
Sbjct:    6 VLVGLGNPGARYEGTRHNCGFALIDAFVD 34          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_ARTAT (Peptidyl-tRNA hydrolase OS=Arthrobacter aurescens (strain TC1) GN=pth PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.247e-19
Identity = 34/128 (26.56%), Postives = 66/128 (51.56%), Query Frame = 2
Query:  473 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856
            +G   V+LAKP TYMN+SG     L  ++ +  + V+  HD++ +P                  + +       +++ R+R+G+GRPPG+M+   ++L+ F    ++ +   L E  + ++LL+ +GL
Sbjct:   56 IGGPRVVLAKPMTYMNVSGGPVAGLCNFFDIAPDHVIAVHDEIDIPFNTVKLKMGGGEGGHNGLRDISKAL-ATKDYLRVRVGVGRPPGRMETADYVLRDFATAEKKELPFLLDEAADAVELLMDQGL 182          

HSP 2 Score: 45.4394 bits (106), Expect = 1.247e-19
Identity = 21/50 (42.00%), Postives = 26/50 (52.00%), Query Frame = 3
Query:  327 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGLL 476
            WL VGLGNPG +Y   RHNVG  ++D  A   G        +A   +G L
Sbjct:    5 WLIVGLGNPGSEYSNNRHNVGQMVLDELASRMGGKFKVHKARAQVVEGRL 54          
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_STRSY (Peptidyl-tRNA hydrolase OS=Streptococcus suis (strain 05ZYH33) GN=pth PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.248e-19
Identity = 42/134 (31.34%), Postives = 66/134 (49.25%), Query Frame = 2
Query:  449 QSYFRTRFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSK 850
            Q+   T F+    + L KP T+MN SG++   L  YY L    +LV +DD+ +  G                KS++ +  G +EF R++IGIGRP G+M     +L  F+   R  ID AL +  + + + L +
Sbjct:   45 QADIATTFIDGEKIYLVKPTTFMNESGKAVHALMTYYGLDATDILVAYDDLDMAVGKIRFRQKGSAGGHNGIKSIVKHI-GTQEFDRIKIGIGRPKGKMSVVNHVLSGFDIEDRIEIDLALDKLDKAVNVYLEE 177          

HSP 2 Score: 47.7506 bits (112), Expect = 1.248e-19
Identity = 18/36 (50.00%), Postives = 27/36 (75.00%), Query Frame = 3
Query:  330 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMN 437
            L +GLGNPGD+Y  T+HNVGF ++D  A+ + ++ N
Sbjct:    4 LIIGLGNPGDRYFETKHNVGFMLLDKIAKRENVTFN 39          
The following BLAST results are available for this feature:
BLAST of CV887372 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PTH_CLOBK5.672e-2032.74Peptidyl-tRNA hydrolase OS=Clostridium botulinum (... [more]
PTH_SYNJB7.332e-2035.54Peptidyl-tRNA hydrolase OS=Synechococcus sp. GN=pt... [more]
PTH_DESVV7.360e-2032.54Peptidyl-tRNA hydrolase OS=Desulfovibrio vulgaris ... [more]
PTH_DESVH7.360e-2032.54Peptidyl-tRNA hydrolase OS=Desulfovibrio vulgaris ... [more]
PTH_DESVM7.360e-2033.33Peptidyl-tRNA hydrolase OS=Desulfovibrio vulgaris ... [more]
PTH_MYXXD7.373e-2033.33Peptidyl-tRNA hydrolase OS=Myxococcus xanthus (str... [more]
PTH_EUBR37.382e-2031.67Peptidyl-tRNA hydrolase OS=Eubacterium rectale (st... [more]
PTH_DESDA9.532e-2035.25Peptidyl-tRNA hydrolase OS=Desulfovibrio desulfuri... [more]
PTH_ARTAT1.247e-1926.56Peptidyl-tRNA hydrolase OS=Arthrobacter aurescens ... [more]
PTH_STRSY1.248e-1931.34Peptidyl-tRNA hydrolase OS=Streptococcus suis (str... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_030H06_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T3_H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887372 ID=CV887372; Name=CV887372; organism=Citrus sinensis; type=EST; length=857bp
AGAGAACGACACATTCACTCACACACGTCCTCTCTGCAGCCACAGCCGCC
GCTTACAAACGCCCCTCTAACCCTAAGCTGACAAACGCCCACGCCCACGC
CCACGCTGCCGGCGCTGTCACTTTGGTTCAAGTGTGCCGACGCTGCAGCT
TCTAGCCGTTCTCGATTTGCTTCCTCGTTCCAGCTGCTGCGCTGCCTCCG
GCTTCGTTCGCCGTCGTCAGCCGTCGTCAGCCGCACAAGTGAAGTGGAAG
GAAACTGAGAACATTTGAGGAGATGCTTATTAACAGGTTTCTGAGGCGTG
GTTTCTGCACTGCTGTTGCTCGGCCATGGCTTTTTGTGGGGTTGGGTAAC
CCGGGAGATAAATACAAAGGAACTAGACACAATGTGGGGTTTGAGATGAT
CGACGCATTTGCTGAATCACAAGGGATTTCTATGAACACGGTTCATTGCA
AAGCTACTTTCGGACAAGGTTTGTTGGTGATGCCCCTGTACTCCTTGCAA
AGCCACAGACTTACATGAATCTGAGCGGTGAATCTACTGGACCACTTGCA
GCTTATTATAAGTTACCTCTTAATCGTGTTCTTGTGTTTCATGATGACAT
GGGCTTACCTTGTGGAGTGCTTCGTCTGCGCCACAATGGAGGTCATGGAG
GCCACAATGGGCTGAAGAGTGTGATGAACAACTTTCGAGGTAACCGAGAA
TTTGCTCGGCTAAGAATTGGTATTGGGAGGCCTCCTGGTCAAATGGATCC
TAAAGCTTTCTTGCTGCAGAAGTTTAATGCAATAGCTCGAGAGCGAATTG
ATACTGCTTTGCAAGAAAGGGTTGAGGTTCTGAAGCTGCTTTTATCTAAA
GGCTTGA
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