CV887372
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_CLOBK (Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Okra / Type B1) GN=pth PE=3 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 5.672e-20 Identity = 37/113 (32.74%), Postives = 59/113 (52.21%), Query Frame = 2 Query: 473 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTAL 811 +G+ ++L KP TYMNLSGES A +YK+ ++V +DDM + G K+++ + + F R+R+GIG+P + ++L KF+ RE ID L Sbjct: 51 IGNEKIILLKPSTYMNLSGESVIEAANFYKIDKENIIVIYDDMSIDIGKLRVRGKGSAGGHNGIKNIIQHLNSD-IFPRVRVGIGQPDENV--VNYVLGKFSKDQREIIDKVL 160 HSP 2 Score: 54.6842 bits (130), Expect = 5.672e-20 Identity = 23/48 (47.92%), Postives = 33/48 (68.75%), Query Frame = 3 Query: 327 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQG 470 +L VGLGN G +YK TRHN+GF+++D AE I +N K ++G+G Sbjct: 2 YLVVGLGNIGKEYKKTRHNIGFDVVDIIAEKYNIEINRQKFKGSYGEG 49
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_SYNJB (Peptidyl-tRNA hydrolase OS=Synechococcus sp. GN=pth PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 7.332e-20 Identity = 43/121 (35.54%), Postives = 62/121 (51.24%), Query Frame = 2 Query: 494 LAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856 L KP+TYMN SG+S + +YKL L VLV +DDM LP G KS++ + G+ F RLR+G+G+P G D +L F +E ++ L VE ++ +GL Sbjct: 72 LLKPETYMNRSGQSVRAVLDWYKLDLASVLVVYDDMDLPLGRLRLRGSGSAGGHNGMKSIIQHL-GSEAFPRLRLGVGKPKGSQDVVGHVLGGFAPAEQEVLERVLDVAVEAVECCWQEGL 191 HSP 2 Score: 44.669 bits (104), Expect = 7.332e-20 Identity = 19/35 (54.29%), Postives = 24/35 (68.57%), Query Frame = 3 Query: 330 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISM 434 L VGLGNPG +Y TRHN GF ++D A+ GI + Sbjct: 16 LVVGLGNPGPQYANTRHNCGFMVVDRLAQRWGIPL 50
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_DESVV (Peptidyl-tRNA hydrolase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=pth PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 7.360e-20 Identity = 41/126 (32.54%), Postives = 69/126 (54.76%), Query Frame = 2 Query: 476 GDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKG 853 G AP LLAKPQT+MNLSGE+ +A++Y++ ++V HD++ LP G KS+ G +F RLR+GIG+PP + ++L +F+ +D L+ ++ ++ ++G Sbjct: 64 GQAPWLLAKPQTFMNLSGEAVLAIASFYRVKPAAMVVAHDELDLPLGRMRFKMGGGNAGHNGLKSI-TQCLGTPDFHRLRLGIGKPPAGGETTGWVLGRFSQSDTAMVDAVLEAAIQGIRTFATEG 188 HSP 2 Score: 41.5874 bits (96), Expect = 7.360e-20 Identity = 18/29 (62.07%), Postives = 20/29 (68.97%), Query Frame = 3 Query: 330 LFVGLGNPGDKYKGTRHNVGFEMIDAFAE 416 L +GLGNPG +Y TRHN GF IDA E Sbjct: 6 LIIGLGNPGREYDRTRHNFGFMFIDALLE 34
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_DESVH (Peptidyl-tRNA hydrolase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=pth PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 7.360e-20 Identity = 41/126 (32.54%), Postives = 69/126 (54.76%), Query Frame = 2 Query: 476 GDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKG 853 G AP LLAKPQT+MNLSGE+ +A++Y++ ++V HD++ LP G KS+ G +F RLR+GIG+PP + ++L +F+ +D L+ ++ ++ ++G Sbjct: 64 GQAPWLLAKPQTFMNLSGEAVLAIASFYRVKPAAMVVAHDELDLPLGRMRFKMGGGNAGHNGLKSI-TQCLGTPDFHRLRLGIGKPPAGGETTGWVLGRFSQSDTAMVDAVLEAAIQGIRTFATEG 188 HSP 2 Score: 41.5874 bits (96), Expect = 7.360e-20 Identity = 18/29 (62.07%), Postives = 20/29 (68.97%), Query Frame = 3 Query: 330 LFVGLGNPGDKYKGTRHNVGFEMIDAFAE 416 L +GLGNPG +Y TRHN GF IDA E Sbjct: 6 LIIGLGNPGREYDRTRHNFGFMFIDALLE 34
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_DESVM (Peptidyl-tRNA hydrolase OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=pth PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 7.360e-20 Identity = 41/123 (33.33%), Postives = 67/123 (54.47%), Query Frame = 2 Query: 485 PVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKG 853 P L+AKPQT+MNLSGE+ +A+YY++ + +LV HD++ +P G KS+ G +F RLR+GIGR P + ++L + + + +DT L V+ + + S+G Sbjct: 67 PWLVAKPQTFMNLSGEAVLAIASYYRIKPDAILVVHDELDIPLGRMKFKTGGGNAGHNGLKSI-TQLLGTPDFHRLRLGIGRSPHGGETTNWVLGRLSGPEQTLLDTLLPAAVQAMTIFASQG 188 HSP 2 Score: 43.5134 bits (101), Expect = 7.360e-20 Identity = 18/30 (60.00%), Postives = 23/30 (76.67%), Query Frame = 3 Query: 330 LFVGLGNPGDKYKGTRHNVGFEMIDAFAES 419 L VGLGNPG +Y+ TRHN+GF +DA E+ Sbjct: 6 LIVGLGNPGKEYERTRHNLGFMAVDALMEA 35
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_MYXXD (Peptidyl-tRNA hydrolase OS=Myxococcus xanthus (strain DK 1622) GN=pth PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 7.373e-20 Identity = 43/129 (33.33%), Postives = 68/129 (52.71%), Query Frame = 2 Query: 488 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKA------FLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856 VL +PQT+MNLSG S A ++K+P+ VLV HD++ LP G KS++++ G+ F RLR GIG+P G P A ++L F+ R +D + +++ +L + +GL Sbjct: 56 VLFVEPQTFMNLSGRSVAEAARFFKVPVADVLVIHDELDLPLGRLQLKAGGGSGGHNGLKSIVSSL-GDESFIRLRFGIGKPEG---PNARERVSDYVLSNFDDGERREMDALIDRAMDMTELWIREGL 180 HSP 2 Score: 45.0542 bits (105), Expect = 7.373e-20 Identity = 21/49 (42.86%), Postives = 28/49 (57.14%), Query Frame = 3 Query: 330 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGLL 476 L VGLGNPG +Y+ RHN+GF +++A +N A GQG L Sbjct: 3 LIVGLGNPGREYERHRHNIGFMVVEALLSRARAQLNQEKFAAKVGQGTL 51
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_EUBR3 (Peptidyl-tRNA hydrolase OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=pth PE=3 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 7.382e-20 Identity = 38/120 (31.67%), Postives = 63/120 (52.50%), Query Frame = 2 Query: 488 VLLAKPQTYMNLSGESTGPLAAYYKL-PLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLL 844 VLL KPQTYMNLSGES + +YKL P ++V DD+ L G KS++ G + F+R+++G+G P D +L +F++ R +++ A+ ++ L++ Sbjct: 56 VLLVKPQTYMNLSGESVAEVMNFYKLDPDEEMIVIFDDISLEPGRIRIRKKGSAGGHNGIKSII-AMTGTQGFSRIKVGVGEKPQGWDLADHVLGRFSSEDRAKVEEAIGHAMDAAVLMM 174 HSP 2 Score: 54.299 bits (129), Expect = 7.382e-20 Identity = 24/50 (48.00%), Postives = 34/50 (68.00%), Query Frame = 3 Query: 327 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGLL 476 ++ VGLGNP KY+ TRHN+GF++IDA A+ IS+ KA G G++ Sbjct: 2 YVIVGLGNPDKKYEHTRHNIGFDVIDALADKYNISVTDKKHKALCGSGVI 51
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_DESDA (Peptidyl-tRNA hydrolase OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=pth PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 9.532e-20 Identity = 43/122 (35.25%), Postives = 63/122 (51.64%), Query Frame = 2 Query: 491 LLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856 L AKPQT+MNLSG+ PL +++KL ++V HD++ +P G KS+ G +F RLR+GIGRPP + D ++L + E +D L ++VL KGL Sbjct: 67 LAAKPQTFMNLSGQCVQPLLSWHKLKAADLVVAHDELDIPPGELRFKFGGGNAGHNGLKSI-TELLGTPDFYRLRMGIGRPPHKGDVTNWVLGRPQGEDAENLDHILPLALDVLFAFADKGL 187 HSP 2 Score: 47.7506 bits (112), Expect = 9.532e-20 Identity = 19/29 (65.52%), Postives = 24/29 (82.76%), Query Frame = 3 Query: 330 LFVGLGNPGDKYKGTRHNVGFEMIDAFAE 416 + VGLGNPG +Y+GTRHN GF +IDAF + Sbjct: 6 VLVGLGNPGARYEGTRHNCGFALIDAFVD 34
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_ARTAT (Peptidyl-tRNA hydrolase OS=Arthrobacter aurescens (strain TC1) GN=pth PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 1.247e-19 Identity = 34/128 (26.56%), Postives = 66/128 (51.56%), Query Frame = 2 Query: 473 VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSKGL 856 +G V+LAKP TYMN+SG L ++ + + V+ HD++ +P + + +++ R+R+G+GRPPG+M+ ++L+ F ++ + L E + ++LL+ +GL Sbjct: 56 IGGPRVVLAKPMTYMNVSGGPVAGLCNFFDIAPDHVIAVHDEIDIPFNTVKLKMGGGEGGHNGLRDISKAL-ATKDYLRVRVGVGRPPGRMETADYVLRDFATAEKKELPFLLDEAADAVELLMDQGL 182 HSP 2 Score: 45.4394 bits (106), Expect = 1.247e-19 Identity = 21/50 (42.00%), Postives = 26/50 (52.00%), Query Frame = 3 Query: 327 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGLL 476 WL VGLGNPG +Y RHNVG ++D A G +A +G L Sbjct: 5 WLIVGLGNPGSEYSNNRHNVGQMVLDELASRMGGKFKVHKARAQVVEGRL 54
BLAST of CV887372 vs. ExPASy Swiss-Prot
Match: PTH_STRSY (Peptidyl-tRNA hydrolase OS=Streptococcus suis (strain 05ZYH33) GN=pth PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.248e-19 Identity = 42/134 (31.34%), Postives = 66/134 (49.25%), Query Frame = 2 Query: 449 QSYFRTRFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQERVEVLKLLLSK 850 Q+ T F+ + L KP T+MN SG++ L YY L +LV +DD+ + G KS++ + G +EF R++IGIGRP G+M +L F+ R ID AL + + + + L + Sbjct: 45 QADIATTFIDGEKIYLVKPTTFMNESGKAVHALMTYYGLDATDILVAYDDLDMAVGKIRFRQKGSAGGHNGIKSIVKHI-GTQEFDRIKIGIGRPKGKMSVVNHVLSGFDIEDRIEIDLALDKLDKAVNVYLEE 177 HSP 2 Score: 47.7506 bits (112), Expect = 1.248e-19 Identity = 18/36 (50.00%), Postives = 27/36 (75.00%), Query Frame = 3 Query: 330 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMN 437 L +GLGNPGD+Y T+HNVGF ++D A+ + ++ N Sbjct: 4 LIIGLGNPGDRYFETKHNVGFMLLDKIAKRENVTFN 39 The following BLAST results are available for this feature:
BLAST of CV887372 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CV887372 ID=CV887372; Name=CV887372; organism=Citrus sinensis; type=EST; length=857bpback to top |