EY665710

Overview
NameEY665710
Unique NameEY665710
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665710_ssr269 microsatellite EY665710_ssr269:269..280. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY665710 vs. ExPASy Swiss-Prot
Match: EF1A_PIRIN (Elongation factor 1-alpha OS=Piriformospora indica GN=TEF1 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.447e-31
Identity = 67/124 (54.03%), Postives = 88/124 (70.97%), Query Frame = 2
Query:  347 IEAERLPGYMKNMITGACLDDCLALIINSTAAEYDAGISTDGQTSENALLAFALGEKQMICCCNTMDTTTPIDSEARYNEIGKEVSSYLKKVGYNPQKIPFMPISGFEGGNLIDKATNLDWYKG 718
            I+A     ++KNMITG    DC  LII     E++AGIS DGQT E+ALLAF LG +Q+I   N MDTT    SEAR+NEI KE S+++KKVGYNP+ + F+PISG+ G N+++ +TN+ WYKG
Sbjct:   90 IDAPGHRDFIKNMITGTSQADCAILIIAGGTGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDTTNW--SEARFNEIVKETSNFIKKVGYNPKTVAFVPISGWHGDNMLEPSTNMPWYKG 211          
BLAST of EY665710 vs. ExPASy Swiss-Prot
Match: EF1A_ENTHI (Elongation factor 1-alpha OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 7.113e-31
Identity = 68/133 (51.13%), Postives = 90/133 (67.67%), Query Frame = 2
Query:  335 YCSEIEAERLPGYMKNMITGACLDDCLALIINSTAAEYDAGISTDGQTSENALLAFALGEKQMICCCNTMDTTTPIDSEARYNEIGKEVSSYLKKVGYNPQKIPFMPISGFEGGNLIDKATNLDWYKGPTLEG 733
            Y + I+A     ++KNMITG    D   LI+ +   E++AGIS +GQT E+ LL++ LG KQMI   N MD       + RY EI KE+S++LKK GYNP KIPF+PISGF+G N+I+ +TN+ WYKGPTL G
Sbjct:   86 YFTIIDAPGHRDFIKNMITGTSQADVAILIVAAGTGEFEAGISKNGQTREHILLSYTLGVKQMIVGVNKMDAIQY--KQERYEEIKKEISAFLKKTGYNPDKIPFVPISGFQGDNMIEPSTNMPWYKGPTLIG 216          
BLAST of EY665710 vs. ExPASy Swiss-Prot
Match: EF1A1_SCHPO (Elongation factor 1-alpha-A OS=Schizosaccharomyces pombe GN=tef1a PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 7.113e-31
Identity = 65/124 (52.42%), Postives = 88/124 (70.97%), Query Frame = 2
Query:  347 IEAERLPGYMKNMITGACLDDCLALIINSTAAEYDAGISTDGQTSENALLAFALGEKQMICCCNTMDTTTPIDSEARYNEIGKEVSSYLKKVGYNPQKIPFMPISGFEGGNLIDKATNLDWYKG 718
            I+A     ++KNMITG    DC  LII     E++AGIS DGQT E+ALLA+ LG KQ+I   N MDTT    S+AR+ EI KE S+++KKVG+NP+ +PF+P+SGF+G N+I+  TN+ WY+G
Sbjct:   90 IDAPGHRDFIKNMITGTSQADCAVLIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTTGW--SQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQG 211          
BLAST of EY665710 vs. ExPASy Swiss-Prot
Match: EF1A_CHICK (Elongation factor 1-alpha 1 OS=Gallus gallus GN=EEF1A PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 9.290e-31
Identity = 63/128 (49.22%), Postives = 90/128 (70.31%), Query Frame = 2
Query:  335 YCSEIEAERLPGYMKNMITGACLDDCLALIINSTAAEYDAGISTDGQTSENALLAFALGEKQMICCCNTMDTTTPIDSEARYNEIGKEVSSYLKKVGYNPQKIPFMPISGFEGGNLIDKATNLDWYKG 718
            Y + I+A     ++KNMITG    DC  LI+ +   E++AGIS +GQT E+ALLA+ LG KQ+I   N MD+T P  S+ RY EI KEVS+Y+KK+GYNP  + F+PISG+ G N+++ ++N+ W+KG
Sbjct:   86 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSSNMPWFKG 213          
BLAST of EY665710 vs. ExPASy Swiss-Prot
Match: EF1A_ARXAD (Elongation factor 1-alpha OS=Arxula adeninivorans GN=TEF PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 9.290e-31
Identity = 70/137 (51.09%), Postives = 91/137 (66.42%), Query Frame = 2
Query:  335 YCSEIEAERLPGYMKNMITGACLDDCLALIINSTAAEYDAGISTDGQTSENALLAFALGEKQMICCCNTMDTTTPIDSEARYNEIGKEVSSYLKKVGYNPQKIPFMPISGFEGGNLIDKATNLDWYKG---PTLEGR 736
            Y + I+A     ++KNMITG    DC  LII     E++AGIS DGQT E+ALLAF LG +Q+I   N MD+     SE RYNEI KE S+++KKVG+NP+ +PF+PISG+ G N+I+  TN  WYKG    T EG+
Sbjct:   86 YVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGTGEFEAGISKDGQTREHALLAFTLGVRQLIVAINKMDSVNW--SEDRYNEIVKETSNFIKKVGFNPKAVPFVPISGWNGDNMIEATTNASWYKGWHKETKEGK 220          
BLAST of EY665710 vs. ExPASy Swiss-Prot
Match: EF1A2_SCHPO (Elongation factor 1-alpha-B/C OS=Schizosaccharomyces pombe GN=tef1b PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 9.290e-31
Identity = 65/124 (52.42%), Postives = 88/124 (70.97%), Query Frame = 2
Query:  347 IEAERLPGYMKNMITGACLDDCLALIINSTAAEYDAGISTDGQTSENALLAFALGEKQMICCCNTMDTTTPIDSEARYNEIGKEVSSYLKKVGYNPQKIPFMPISGFEGGNLIDKATNLDWYKG 718
            I+A     ++KNMITG    DC  LII     E++AGIS DGQT E+ALLA+ LG KQ+I   N MDTT    S+AR+ EI KE S+++KKVG+NP+ +PF+P+SGF+G N+I+  TN+ WY+G
Sbjct:   90 IDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTTGW--SQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQG 211          
BLAST of EY665710 vs. ExPASy Swiss-Prot
Match: EF1A_ORYLA (Elongation factor 1-alpha OS=Oryzias latipes GN=eef1a PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.213e-30
Identity = 64/132 (48.48%), Postives = 91/132 (68.94%), Query Frame = 2
Query:  335 YCSEIEAERLPGYMKNMITGACLDDCLALIINSTAAEYDAGISTDGQTSENALLAFALGEKQMICCCNTMDTTTPIDSEARYNEIGKEVSSYLKKVGYNPQKIPFMPISGFEGGNLIDKATNLDWYKGPTLE 730
            Y + I+A     ++KNMITG    DC  LI+ +   E++AGIS +GQT E+ALLAF LG KQ+I   N MD+T P  S+AR+ EI KEVS+Y+KK+GYNP  + F+PISG+ G N+++ +  + W+KG  +E
Sbjct:   86 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSQARFEEIQKEVSTYIKKIGYNPAAVAFVPISGWHGDNMLEASDKMSWFKGWKIE 217          
BLAST of EY665710 vs. ExPASy Swiss-Prot
Match: EF1A3_HUMAN (Putative elongation factor 1-alpha-like 3 OS=Homo sapiens GN=EEF1AL3 PE=5 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.213e-30
Identity = 63/128 (49.22%), Postives = 89/128 (69.53%), Query Frame = 2
Query:  335 YCSEIEAERLPGYMKNMITGACLDDCLALIINSTAAEYDAGISTDGQTSENALLAFALGEKQMICCCNTMDTTTPIDSEARYNEIGKEVSSYLKKVGYNPQKIPFMPISGFEGGNLIDKATNLDWYKG 718
            Y + I+A     ++KNMITG    DC  LI+ +   E++AGIS +GQT E+ALLA+ LG KQ+I   N MD+T P  S+ RY EI KEVS+Y+KK+GYNP  + F+PISG+ G N+++ + N+ W+KG
Sbjct:   86 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWFKG 213          
BLAST of EY665710 vs. ExPASy Swiss-Prot
Match: EF1A1_RAT (Elongation factor 1-alpha 1 OS=Rattus norvegicus GN=Eef1a1 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.213e-30
Identity = 63/128 (49.22%), Postives = 89/128 (69.53%), Query Frame = 2
Query:  335 YCSEIEAERLPGYMKNMITGACLDDCLALIINSTAAEYDAGISTDGQTSENALLAFALGEKQMICCCNTMDTTTPIDSEARYNEIGKEVSSYLKKVGYNPQKIPFMPISGFEGGNLIDKATNLDWYKG 718
            Y + I+A     ++KNMITG    DC  LI+ +   E++AGIS +GQT E+ALLA+ LG KQ+I   N MD+T P  S+ RY EI KEVS+Y+KK+GYNP  + F+PISG+ G N+++ + N+ W+KG
Sbjct:   86 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWFKG 213          
BLAST of EY665710 vs. ExPASy Swiss-Prot
Match: EF1A1_RABIT (Elongation factor 1-alpha 1 OS=Oryctolagus cuniculus GN=EEF1A1 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.213e-30
Identity = 63/128 (49.22%), Postives = 89/128 (69.53%), Query Frame = 2
Query:  335 YCSEIEAERLPGYMKNMITGACLDDCLALIINSTAAEYDAGISTDGQTSENALLAFALGEKQMICCCNTMDTTTPIDSEARYNEIGKEVSSYLKKVGYNPQKIPFMPISGFEGGNLIDKATNLDWYKG 718
            Y + I+A     ++KNMITG    DC  LI+ +   E++AGIS +GQT E+ALLA+ LG KQ+I   N MD+T P  S+ RY EI KEVS+Y+KK+GYNP  + F+PISG+ G N+++ + N+ W+KG
Sbjct:   86 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWFKG 213          
The following BLAST results are available for this feature:
BLAST of EY665710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 178
Match NameE-valueIdentityDescription
EF1A_PIRIN5.447e-3154.03Elongation factor 1-alpha OS=Piriformospora indica... [more]
EF1A_ENTHI7.113e-3151.13Elongation factor 1-alpha OS=Entamoeba histolytica... [more]
EF1A1_SCHPO7.113e-3152.42Elongation factor 1-alpha-A OS=Schizosaccharomyces... [more]
EF1A_CHICK9.290e-3149.22Elongation factor 1-alpha 1 OS=Gallus gallus GN=EE... [more]
EF1A_ARXAD9.290e-3151.09Elongation factor 1-alpha OS=Arxula adeninivorans ... [more]
EF1A2_SCHPO9.290e-3152.42Elongation factor 1-alpha-B/C OS=Schizosaccharomyc... [more]
EF1A_ORYLA1.213e-3048.48Elongation factor 1-alpha OS=Oryzias latipes GN=ee... [more]
EF1A3_HUMAN1.213e-3049.22Putative elongation factor 1-alpha-like 3 OS=Homo ... [more]
EF1A1_RAT1.213e-3049.22Elongation factor 1-alpha 1 OS=Rattus norvegicus G... [more]
EF1A1_RABIT1.213e-3049.22Elongation factor 1-alpha 1 OS=Oryctolagus cunicul... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-092-G01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665710 ID=EY665710; Name=EY665710; organism=Citrus sinensis; type=EST; length=806bp
ACTATAAATGGCGGACGCGGTCCACACATCTTCAATCTCATGCTCATCAA
CTAATATCATTTCTCTCAATACTAACACAACGGCTCTAGATTCTCTGCAT
TTACGCTCTCTCTCCGCTTTCCATTGCGACTAATCAACCTGTTACACGTG
TGCACCCCTCCTCTCCAAGAATACTCTCTCTCGATCGACAAGGCTTCATA
AGTCGTAGACGAAACAAGGGGGGAGGACCAGATCTGGGTCGCCGATGTCC
GCCGGGTCCAATCATTCCATGATGATGATGACCACTCTATTGGCGTTGCA
ATCGATTAGGATAATAACAAGCACCTTGGACGACTACTGCTCCGAAATTG
AGGCTGAACGACTTCCAGGATATATGAAAAACATGATAACGGGTGCTTGC
CTCGATGACTGTCTTGCTCTGATCATTAACTCTACCGCTGCTGAATATGA
TGCTGGTATCTCCACTGATGGACAGACATCAGAGAATGCTTTGCTTGCTT
TCGCCCTTGGTGAGAAGCAGATGATTTGCTGCTGTAACACGATGGACACC
ACCACCCCCATTGATTCGGAGGCTAGGTACAATGAAATTGGGAAGGAGGT
CTCTTCCTACCTGAAGAAAGTTGGATACAACCCCCAAAAAATCCCTTTCA
TGCCCATCTCTGGTTTCGAGGGGGGGAACTTGATTGATAAGGCTACCAAC
CTTGACTGGTACAAGGGACCCACCCTGGAGGGGCGCCCTTGAAAATTTCA
TTAACCCTAAAAGGGCCTCAAAAAAAACCCTTTCGGGTGGCTCCTCAAAG
AAGGGT
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