CX069602

Overview
NameCX069602
Unique NameCX069602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length524
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069602 vs. ExPASy Swiss-Prot
Match: ADH1_GEOKN (Alcohol dehydrogenase 1 OS=Geomys knoxjonesi GN=ADH1 PE=2 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 2.809e-24
Identity = 54/121 (44.63%), Postives = 78/121 (64.46%), Query Frame = 3
Query:    3 QVIAEMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 365
            QV+ EMT+GGVD S E  G +  M+SA  C  +  GV+V+VGVP    +    PM LL+ R+ KG  FG YK + D+P +V  +M K+  LE  IT+  PF++IN+ FDL+ +G+SIR ++
Sbjct:  253 QVLQEMTDGGVDFSFEVIGRLDTMVSALMCCQESHGVSVIVGVPPNAQSLTMDPMVLLSGRSWKGAVFGGYKGKDDVPKLVADFMAKKFPLEPLITNVFPFAKINEGFDLLRAGKSIRTVL 373          
BLAST of CX069602 vs. ExPASy Swiss-Prot
Match: ADH1_GEOBU (Alcohol dehydrogenase 1 OS=Geomys bursarius GN=ADH1 PE=2 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 2.809e-24
Identity = 54/121 (44.63%), Postives = 78/121 (64.46%), Query Frame = 3
Query:    3 QVIAEMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 365
            QV+ EMT+GGVD S E  G +  M+SA  C  +  GV+V+VGVP    +    PM LL+ R+ KG  FG YK + D+P +V  +M K+  LE  IT+  PF++IN+ FDL+ +G+SIR ++
Sbjct:  253 QVLQEMTDGGVDFSFEVIGRLDTMVSALMCCQESHGVSVIVGVPPNAQSLTMDPMVLLSGRSWKGAVFGGYKGKDDVPKLVADFMAKKFPLEPLITNVFPFAKINEGFDLLRAGKSIRTVL 373          
BLAST of CX069602 vs. ExPASy Swiss-Prot
Match: ADH1_ALLMI (Alcohol dehydrogenase 1 OS=Alligator mississippiensis PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.809e-24
Identity = 50/121 (41.32%), Postives = 77/121 (63.64%), Query Frame = 3
Query:    3 QVIAEMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 365
            +V++EMT GGVD S E  G +  M +A  C  D +G +V+VGVP   +    +PM L   RT KG+ FG +K +  +P +V  YM K++ L+  ITH +PF +IN+ F+L+ +G+SIR ++
Sbjct:  252 EVLSEMTGGGVDYSFEVIGRIDTMTAALACCQDNYGTSVIVGVPPASEKITFNPMMLFTGRTWKGSVFGGWKSKESVPKLVADYMEKKINLDGLITHTLPFDKINEGFELLRTGKSIRSVL 372          
BLAST of CX069602 vs. ExPASy Swiss-Prot
Match: FADH_PARDE (S-(hydroxymethyl)glutathione dehydrogenase OS=Paracoccus denitrificans GN=flhA PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.669e-24
Identity = 49/113 (43.36%), Postives = 72/113 (63.72%), Query Frame = 3
Query:   27 GGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 365
            GG D S +CTG+V+ M  A EC H GWG ++++GV        T P  L+  R  KGT FG  + R+D+P +V+ YM+ ++E++  ITH +   +INK FDLM +GESIR ++
Sbjct:  261 GGADYSFDCTGNVKVMRDALECTHRGWGQSIIIGVAPAGAEISTRPFQLVTGRVWKGTAFGGARGRTDVPQIVDWYMDGKIEIDPMITHTLSLDDINKGFDLMHAGESIRSVV 373          
BLAST of CX069602 vs. ExPASy Swiss-Prot
Match: ADH1_RAT (Alcohol dehydrogenase 1 OS=Rattus norvegicus GN=Adh1 PE=1 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 4.792e-24
Identity = 54/121 (44.63%), Postives = 77/121 (63.64%), Query Frame = 3
Query:    3 QVIAEMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCII 365
            +V+ EMT+GGVD S E  G +  M SA    H   GV+V+VGVP    +   +PM+LL  RT KG  FG +K +  +P +V  +M K+  LE  ITH +PF +IN+AFDL+ +G+SIR ++
Sbjct:  254 EVLQEMTDGGVDFSFEVIGRLDTMTSALLSCHSACGVSVIVGVPPSAQSLSVNPMSLLLGRTWKGAIFGGFKSKDAVPKLVADFMAKKFPLEPLITHVLPFEKINEAFDLLRAGKSIRTVL 374          
BLAST of CX069602 vs. ExPASy Swiss-Prot
Match: FRMA_SHISS (S-(hydroxymethyl)glutathione dehydrogenase OS=Shigella sonnei (strain Ss046) GN=frmA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 6.258e-24
Identity = 52/121 (42.98%), Postives = 72/121 (59.50%), Query Frame = 3
Query:    6 VIAEMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCIIR 368
            V+ ++   G+D + EC G+V  M +A E  H GWG +V++GV        T P  L+  R  KG+ FG  K RS LP +VE  M  +++LE F+TH +   EIN AFDLM  G+SIR +IR
Sbjct:  248 VLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLVTGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVIR 368          
BLAST of CX069602 vs. ExPASy Swiss-Prot
Match: FRMA_ECOUT (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 6.258e-24
Identity = 52/121 (42.98%), Postives = 72/121 (59.50%), Query Frame = 3
Query:    6 VIAEMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCIIR 368
            V+ ++   G+D + EC G+V  M +A E  H GWG +V++GV        T P  L+  R  KG+ FG  K RS LP +VE  M  +++LE F+TH +   EIN AFDLM  G+SIR +IR
Sbjct:  248 VLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLVTGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVIR 368          
BLAST of CX069602 vs. ExPASy Swiss-Prot
Match: FRMA_ECOSM (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 6.258e-24
Identity = 52/121 (42.98%), Postives = 72/121 (59.50%), Query Frame = 3
Query:    6 VIAEMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCIIR 368
            V+ ++   G+D + EC G+V  M +A E  H GWG +V++GV        T P  L+  R  KG+ FG  K RS LP +VE  M  +++LE F+TH +   EIN AFDLM  G+SIR +IR
Sbjct:  248 VLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLVTGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVIR 368          
BLAST of CX069602 vs. ExPASy Swiss-Prot
Match: FRMA_ECOLC (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=frmA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 6.258e-24
Identity = 52/121 (42.98%), Postives = 72/121 (59.50%), Query Frame = 3
Query:    6 VIAEMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCIIR 368
            V+ ++   G+D + EC G+V  M +A E  H GWG +V++GV        T P  L+  R  KG+ FG  K RS LP +VE  M  +++LE F+TH +   EIN AFDLM  G+SIR +IR
Sbjct:  248 VLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLVTGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVIR 368          
BLAST of CX069602 vs. ExPASy Swiss-Prot
Match: FRMA_ECOL6 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O6 GN=frmA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 6.258e-24
Identity = 52/121 (42.98%), Postives = 72/121 (59.50%), Query Frame = 3
Query:    6 VIAEMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKEMELEKFITHAVPFSEINKAFDLMLSGESIRCIIR 368
            V+ ++   G+D + EC G+V  M +A E  H GWG +V++GV        T P  L+  R  KG+ FG  K RS LP +VE  M  +++LE F+TH +   EIN AFDLM  G+SIR +IR
Sbjct:  248 VLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLVTGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVIR 368          
The following BLAST results are available for this feature:
BLAST of CX069602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
ADH1_GEOKN2.809e-2444.63Alcohol dehydrogenase 1 OS=Geomys knoxjonesi GN=AD... [more]
ADH1_GEOBU2.809e-2444.63Alcohol dehydrogenase 1 OS=Geomys bursarius GN=ADH... [more]
ADH1_ALLMI2.809e-2441.32Alcohol dehydrogenase 1 OS=Alligator mississippien... [more]
FADH_PARDE3.669e-2443.36S-(hydroxymethyl)glutathione dehydrogenase OS=Para... [more]
ADH1_RAT4.792e-2444.63Alcohol dehydrogenase 1 OS=Rattus norvegicus GN=Ad... [more]
FRMA_SHISS6.258e-2442.98S-(hydroxymethyl)glutathione dehydrogenase OS=Shig... [more]
FRMA_ECOUT6.258e-2442.98S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECOSM6.258e-2442.98S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECOLC6.258e-2442.98S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECOL66.258e-2442.98S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11F04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11F04-L7-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069602 ID=CX069602; Name=CX069602; organism=Citrus sinensis; type=EST; length=524bp
AACAGGTGATTGCTGAAATGACCAATGGTGGAGTGGATAGAAGTGTTGAA
TGTACTGGAAGCGTCCAGGCCATGATCTCAGCATTTGAATGCGTTCACGA
TGGTTGGGGTGTTGCTGTGCTTGTGGGTGTGCCAAACAAAGATGATGCAT
TCAAGACTCATCCCATGAATCTGCTTAATGAGAGGACTCTTAAGGGTACC
TTCTTTGGCAACTACAAACCTCGCTCTGATCTTCCTTCAGTTGTTGAAAA
ATACATGAACAAGGAGATGGAGCTTGAGAAATTCATCACTCATGCTGTGC
CCTTCTCGGAGATAAACAAGGCATTTGACCTCATGCTTTCGGGAGAAAGC
ATTAGGTGCATCATTCGCATGGATGGTTAGATGTGTCTGCTGTTGCTGAT
CAATCTAATGGAGGCAGAATGAAGATGATCACATAATTTTCCAAGTTATA
TATTACCCCGAGAATAAGTAATTTATGCTGTATGTTTGATGACTTGCTGC
GAATGGCTTTCAAAGAGTTGTCCT
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