EY665699

Overview
NameEY665699
Unique NameEY665699
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length875
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9274 contig Csv1_Contig9274:84..954. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY665699 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 337.806 bits (865), Expect = 4.825e-92
Identity = 181/254 (71.26%), Postives = 202/254 (79.53%), Query Frame = 2
Query:  113 GAATSVPSSSFFGTSLKKVSSRIPPSKVPSAS---FKITA-EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREATDIIRKGKMCCLMINDLDAGTGRMGG--HHPVNS*QTKWLNAPLLKHCWKTPLWAQLP 856
            GA  S P++ F G  LKK  +        S++   FK+ A E+DE KQT QDRWKGLAYD SDDQQDITRGKG VDSLFQAP G GTH AV+SSY+Y+SQGLRTY+ DNT+ G YIAPAFMDKLVVHI+KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA DII+KGKMCCL INDLDAG GRMGG   + VN+   + +NA L+ +    P   QLP
Sbjct:   10 GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSNINRFKVMAKELDEGKQTDQDRWKGLAYDISDDQQDITRGKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNN---QMVNATLM-NIADNPTNVQLP 258          
BLAST of EY665699 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 329.331 bits (843), Expect = 1.716e-89
Identity = 178/258 (68.99%), Postives = 201/258 (77.91%), Query Frame = 2
Query:  113 GAATSVPS-SSFFGTSLKK--VSSRIP---PSKVPSASFKITA--EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREATDIIRKGKMCCLMINDLDAGTGRMGG--HHPVNS*QTKWLNAPLLKHCWKTPLWAQLP 856
            GA  S P+ SSF G  L K  VS+ +     S   ++ FK  A  EVDE KQT +DRWKGLAYD SDDQQDITRGKG VD+LFQAPMG GTH AV+SSYDYISQG ++YN DN +DG YIA  FMDKLVVH++KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI PIMMSAGELESGNAGEPAKLIRQRYREA+D+I+KGKM CL INDLDAG GRMGG   + VN+   + +NA L+ +    P   QLP
Sbjct:   10 GAPASTPTRSSFLGKKLNKPQVSAAVTYHGKSSSSNSRFKAMAAKEVDETKQTDEDRWKGLAYDISDDQQDITRGKGLVDNLFQAPMGDGTHVAVLSSYDYISQGQKSYNFDNMMDGFYIAKGFMDKLVVHLSKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGITPIMMSAGELESGNAGEPAKLIRQRYREASDLIKKGKMSCLFINDLDAGAGRMGGTTQYTVNN---QMVNATLM-NIADNPTNVQLP 263          
BLAST of EY665699 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 325.865 bits (834), Expect = 1.897e-88
Identity = 175/253 (69.17%), Postives = 197/253 (77.87%), Query Frame = 2
Query:  113 GAATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITA---EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREATDIIRKGKMCCLMINDLDAGTGRMGG--HHPVNS*QTKWLNAPLLKHCWKTPLWAQLP 856
            GA  S P+  F G  +K        +K+ S   ++ A   E+D+ KQT  DRWKGLAYD SDDQQDITRGKG VDSLFQAPMG GTH A++SSY+YISQGLR Y+ DNT+DGLYIAPAFMDKL+VH+ KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN GEPAKLIRQRYREA DII KGKMCCL INDLDAG GRMGG   + VN+   + +NA L+ +    P   QLP
Sbjct:   10 GAPASTPTI-FLGKKVKNYYHG--GNKMKSRVVRVMAAKKELDQGKQTDADRWKGLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTMDGLYIAPAFMDKLIVHLAKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN-GEPAKLIRQRYREAADIINKGKMCCLFINDLDAGAGRMGGTTQYTVNN---QMVNATLM-NIADAPTNVQLP 254          
BLAST of EY665699 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 322.783 bits (826), Expect = 1.606e-87
Identity = 172/253 (67.98%), Postives = 197/253 (77.87%), Query Frame = 2
Query:  113 GAATSVPSSSFFGTSLKK-VSSRIPPSKVPSASFKITAEVDENKQTKQ--DRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREATDIIRKGKMCCLMINDLDAGTGRMGG--HHPVNS*QTKWLNAPLLKHCWKTPLWAQLP 856
            GA  S P++ F G  LKK V+S +      S + + T    EN   K+  D+WKGLAYD SDDQQDITRGKG VDSLFQAP G GTH AV+SSY+Y+SQGLR Y+ DNT+ G YIAPAFMDKLVVH++KNFM+LPNIK+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA D+I+KGKMCCL INDLDAG GRMGG   + VN+   + +NA L+ +    P   QLP
Sbjct:   10 GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNN---QMVNATLM-NIADAPTNVQLP 257          
BLAST of EY665699 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 313.923 bits (803), Expect = 7.461e-85
Identity = 165/262 (62.98%), Postives = 195/262 (74.43%), Query Frame = 2
Query:   80 AAAVPLSFNGSGAATSVPSSSFFGTSLKKVSS-RIPPSKVPSASFKITAEVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREATDIIRKGKMCCLMINDLDAGTGRMGG--HHPVNS*QTKWLNAPLLKHCWKTPLWAQLP 856
            A   PL+ NGS A  SVP+S F G+SLKK ++ R P S   S +  +T +  EN++   D+W  LA D SDDQ DI RGKG VDSLFQAP   GTH  + SS++Y SQGLR Y++DN +   YIAPAFMDKLVVHITKNF++LPNIK+PLILG+WGGKGQGKSFQCELVFAK+GINPIMMSAGELESGNAGEPAKLIRQRYREA D+I KGKMC L INDL+ G GRMGG   + VN+   + +NA L+ +    P   QLP
Sbjct:   11 ATRAPLNLNGSSAGASVPTSGFLGSSLKKHTNVRFPSS---SRTTSMTVKAAENEEKNTDKWAHLAKDFSDDQLDIRRGKGMVDSLFQAPADAGTHVPIQSSFEYESQGLRKYDIDNMLGDFYIAPAFMDKLVVHITKNFLNLPNIKIPLILGVWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLEPGAGRMGGTTQYTVNN---QMVNATLM-NIADNPTNVQLP 265          
BLAST of EY665699 vs. ExPASy Swiss-Prot
Match: RCA_CHLRE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 5.203e-62
Identity = 130/233 (55.79%), Postives = 161/233 (69.10%), Query Frame = 2
Query:  173 SRIPPSKVPSASFKITAEVDENKQTKQDRWKGL--AYDESDDQQDITRGKGAVDSLFQAPMGTG-THYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREATDIIRKGKMCCLMINDLDAGTGRMGG--HHPVNS*QTKWLNAPLLKHCWKTPLWAQLP 856
            +R+    V  A  ++ A      + +  RW+ +    D SDDQQDITRG+  VD LFQ   G G TH AV+SS +Y+SQ   ++N  N  DG YI+PAF+DK+ +HI KNFM LP IKVPLILGIWGGKGQGK+FQC L + K+GI PI+MSAGELESGNAGEPAKLIR RYREA+DII+KG+MC L INDLDAG GRMG    + VN+   + +NA L+ +    P   QLP
Sbjct:   18 ARVATRSVRRAQLQVVAP----SRKQMGRWRSIDAGVDASDDQQDITRGREMVDDLFQGGFGAGGTHNAVLSSQEYLSQSRASFN--NIEDGFYISPAFLDKMTIHIAKNFMDLPKIKVPLILGIWGGKGQGKTFQCALAYKKLGIAPIVMSAGELESGNAGEPAKLIRTRYREASDIIKKGRMCSLFINDLDAGAGRMGDTTQYTVNN---QMVNATLM-NIADNPTNVQLP 240          
BLAST of EY665699 vs. ExPASy Swiss-Prot
Match: RCA_ANASC (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 7.566e-37
Identity = 82/141 (58.16%), Postives = 104/141 (73.76%), Query Frame = 2
Query:  443 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREATDIIR-KGKMCCLMINDLDAGTGRM--GGHHPVNS*QTKWLNAPLLKHCWKTPLWAQLP 856
            YIAP F+DKL VHITKNF++LP ++VPLILGI G KG+GK+FQCEL F KMG+   ++S GELES +AG+PA+LIR RYRE  ++I+ +GKMC LMINDLDAG GR   G  + VN   T+ +NA L+ +    P   QLP
Sbjct:    4 YIAPRFLDKLAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGVEVTLISGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVN---TQLVNATLM-NIADNPTDVQLP 140          
BLAST of EY665699 vs. ExPASy Swiss-Prot
Match: RCA_ANASP (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain PCC 7120) GN=rca PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 9.881e-37
Identity = 82/141 (58.16%), Postives = 104/141 (73.76%), Query Frame = 2
Query:  443 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREATDIIR-KGKMCCLMINDLDAGTGRM--GGHHPVNS*QTKWLNAPLLKHCWKTPLWAQLP 856
            YIAP F+DKL VHITKNF+++P ++VPLILGI G KG+GK+FQCEL F KMGI   ++S GELES +AG+PA+LIR RYRE  ++I+ +GKMC LMINDLDAG GR   G  + VN   T+ +NA L+ +    P   QLP
Sbjct:    4 YIAPRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIEVTLISGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVN---TQLVNATLM-NIADNPTDVQLP 140          
BLAST of EY665699 vs. ExPASy Swiss-Prot
Match: RCA_ARAHY (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Fragments) OS=Arachis hypogaea GN=RCA PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.519e-32
Identity = 88/165 (53.33%), Postives = 90/165 (54.55%), Query Frame = 2
Query:  266 GLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREATDIIRKGKMCCLMINDLDAGTGRM 760
            GLAYD SDDQQDITRG   VDSLFQAPM  GTHYAVMSSY+YISQGLR                                    VPLILGIWGGK              MGINPIMMSAGELESGNAGEPA                 KMCCL INDLDAG GR+
Sbjct:    1 GLAYDISDDQQDITRGM--VDSLFQAPMNDGTHYAVMSSYEYISQGLR------------------------------------VPLILGIWGGK--------------MGINPIMMSAGELESGNAGEPA-----------------KMCCLFINDLDAGAGRV 96          
BLAST of EY665699 vs. ExPASy Swiss-Prot
Match: RCA_VITSX (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Fragments) OS=Vitis sp. PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.100e-11
Identity = 37/58 (63.79%), Postives = 39/58 (67.24%), Query Frame = 2
Query:  590 KMGINPIMMSAGELESGNAGEPAKLIRQRYREATDIIRKGKMCCLMINDLDAGTGRMG 763
            +MGINPIMMSAGELESGNAGEPA                 KMCCL INDLDAG GR+G
Sbjct:   15 RMGINPIMMSAGELESGNAGEPA-----------------KMCCLFINDLDAGAGRIG 55          
The following BLAST results are available for this feature:
BLAST of EY665699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RCA_ORYSJ4.825e-9271.26Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MAIZE1.716e-8968.99Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU1.897e-8869.17Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU1.606e-8767.98Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL7.461e-8562.98Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CHLRE5.203e-6255.79Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASC7.566e-3758.16Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASP9.881e-3758.16Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARAHY2.519e-3253.33Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_VITSX1.100e-1163.79Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-092-F02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665699 ID=EY665699; Name=EY665699; organism=Citrus sinensis; type=EST; length=875bp
GTACGGTCGGGATTCCGGGTCGACCCACGCGTCCGCCCACGCGTCCGAAT
CCAGCCGTCCAATTCTCGCTAGCCTAATGGCTGCTGCTGTACCGTTGAGC
TTCAATGGCTCTGGTGCTGCAACCTCTGTCCCAAGCTCATCTTTCTTTGG
CACCAGCTTGAAGAAGGTAAGCTCAAGGATCCCCCCATCCAAGGTCCCTT
CTGCGAGCTTCAAGATTACTGCTGAAGTCGATGAGAACAAGCAGACCAAG
CAGGACAGATGGAAGGGCCTTGCCTACGACGAATCTGATGACCAACAAGA
CATCACCAGAGGAAAAGGTGCTGTGGACTCTCTGTTCCAAGCCCCCATGG
GAACCGGAACTCACTATGCTGTCATGAGTTCTTATGACTACATCAGCCAA
GGTCTCCGCACATACAACTTGGACAACACGATCGACGGTCTCTACATTGC
CCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCATGT
CCCTGCCCAACATCAAGGTTCCTCTCATCTTGGGTATTTGGGGAGGCAAA
GGACAAGGAAAATCATTCCAATGTGAGCTTGTTTTCGCCAAGATGGGCAT
CAACCCAATTATGATGAGTGCCGGAGAATTGGAAAGTGGCAATGCTGGAG
AACCCGCTAAGTTGATCAGGCAGAGGTACCGTGAGGCAACTGACATTATC
AGGAAGGGAAAAATGTGCTGCCTCATGATCAATGATCTTGATGCAGGAAC
TGGTCGTATGGGTGGGCACCACCCAGTAAACAGTTAACAAACCAAATGGT
TAAACGCCCCACTCTTGAAACATTGCTGGAAAACCCCACTTTGGGCCCAA
CTCCCCTGGGAATGAACAACAAAGG
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