CX043297

Overview
NameCX043297
Unique NameCX043297
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043297 vs. ExPASy Swiss-Prot
Match: FER1_MAIZE (Ferredoxin-1, chloroplastic OS=Zea mays GN=FDX1 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.476e-31
Identity = 64/98 (65.31%), Postives = 80/98 (81.63%), Query Frame = 3
Query:  234 SMAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 527
            + A Y +KLI P+GE  E +  +D YILD AEE G+DLPYSCRAG+CS+CAGK+VSGSVDQSD S+LDD Q+  G++LTC +YPTSD VI++HKEEEL
Sbjct:   51 AQATYNVKLITPEGEV-ELQVPDDVYILDQAEEDGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSYLDDGQIADGWVLTCHAYPTSDVVIETHKEEEL 147          
BLAST of CX043297 vs. ExPASy Swiss-Prot
Match: FER_PANGI (Ferredoxin OS=Panax ginseng PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.540e-31
Identity = 62/94 (65.96%), Postives = 79/94 (84.04%), Query Frame = 3
Query:  246 YKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 527
            YK+KL+ P+GE+ EFE  +D YILD AEE G+DLPYSCRAG+CS+CAGK+VSG VD SD SFL+D+ M+AGY+LTC +Y  SD VI++HKEEE+
Sbjct:    4 YKVKLLTPEGEK-EFECPDDVYILDNAEEIGIDLPYSCRAGSCSSCAGKVVSGKVDNSDNSFLNDDNMDAGYVLTCHAYANSDVVIETHKEEEV 96          
BLAST of CX043297 vs. ExPASy Swiss-Prot
Match: FER1_SPIOL (Ferredoxin-1, chloroplastic OS=Spinacia oleracea GN=PETF PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 4.540e-31
Identity = 71/149 (47.65%), Postives = 96/149 (64.43%), Query Frame = 3
Query:   84 STVTLSAPCMVKAAPRNQLSRNLIKSPTSLGSVKGISKTFGLKC-SPNFQASMAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 527
            +T T          P+ Q    +   P++ G        FGLK  S   + +MA YK+ L+ P G   EF+  +D YILDAAEE G+DLPYSCRAG+CS+CAGKL +GS++Q D SFLDD+Q++ G++LTC +YP SD  I++HKEEEL
Sbjct:    3 ATTTTMMGMATTFVPKPQAPPMMAALPSNTGR-----SLFGLKTGSRGGRMTMAAYKVTLVTPTGNV-EFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAAYPVSDVTIETHKEEEL 145          
BLAST of CX043297 vs. ExPASy Swiss-Prot
Match: FER_PORPU (Ferredoxin OS=Porphyra purpurea GN=petF PE=3 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 5.930e-31
Identity = 65/98 (66.33%), Postives = 77/98 (78.57%), Query Frame = 3
Query:  237 MAVYKIKLIGP-KGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 527
            MA YKI L+   +G +  F+  ED YILDAAEEAG++LPYSCRAGACSTCAGK+  GSVDQSD SFLDD Q+  GY+LTCI+YP SDC I +H E+EL
Sbjct:    1 MADYKIHLLSEDEGIDVTFDCSEDTYILDAAEEAGIELPYSCRAGACSTCAGKVTEGSVDQSDQSFLDDEQLLKGYVLTCIAYPESDCTILTHVEQEL 98          
BLAST of CX043297 vs. ExPASy Swiss-Prot
Match: FER_CHLRE (Ferredoxin, chloroplastic OS=Chlamydomonas reinhardtii GN=PETF PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 5.930e-31
Identity = 64/103 (62.14%), Postives = 79/103 (76.70%), Query Frame = 3
Query:  219 PNFQASMAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 527
            P  + S   YK+ L  P G++   E   D YILDAAEEAG+DLPYSCRAGACS+CAGK+ +G+VDQSD SFLDD QM  G++LTC++YPTSDC IQ+H+EE L
Sbjct:   24 PASRMSCMAYKVTLKTPSGDK-TIECPADTYILDAAEEAGLDLPYSCRAGACSSCAGKVAAGTVDQSDQSFLDDAQMGNGFVLTCVAYPTSDCTIQTHQEEAL 125          
BLAST of CX043297 vs. ExPASy Swiss-Prot
Match: FER_TOBAC (Ferredoxin OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.744e-31
Identity = 62/96 (64.58%), Postives = 79/96 (82.29%), Query Frame = 3
Query:  240 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 527
            A YK+KLI P+G   EF+  +D YILD AEE G DLPYSCRAG+CS+CAGK+ +G+VDQSDG+FLDD+QM  G++LTC++YP SD  I++HKEEEL
Sbjct:    1 ASYKVKLITPEGAV-EFDCPDDVYILDQAEEMGHDLPYSCRAGSCSSCAGKVTAGNVDQSDGNFLDDDQMADGFVLTCVAYPQSDVTIETHKEEEL 95          
BLAST of CX043297 vs. ExPASy Swiss-Prot
Match: FER_EUGVI (Ferredoxin OS=Euglena viridis PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.011e-30
Identity = 62/96 (64.58%), Postives = 76/96 (79.17%), Query Frame = 3
Query:  240 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 527
            A Y +KLI P GE    E  EDQYILDAAE+AG+DLPYSCRAGACS+C G +  G+VDQSD SFLDD+QM  G+ LTC +YPTS+C I++HKE++L
Sbjct:    1 ATYSVKLINPDGEV-TIECGEDQYILDAAEDAGIDLPYSCRAGACSSCTGIVKEGTVDQSDQSFLDDDQMAKGFCLTCTTYPTSNCTIETHKEDDL 95          
BLAST of CX043297 vs. ExPASy Swiss-Prot
Match: FER_APHSA (Ferredoxin-1 OS=Aphanothece sacrum PE=1 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 1.011e-30
Identity = 62/97 (63.92%), Postives = 76/97 (78.35%), Query Frame = 3
Query:  237 MAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 527
            MA YK+ L  P G+ +     +D+YILD AEE G+DLPYSCRAGACSTCAGKLVSG     D SFLDD+Q++AGY+LTC++YPT DCVI++HKEE L
Sbjct:    1 MASYKVTLKTPDGD-NVITVPDDEYILDVAEEEGLDLPYSCRAGACSTCAGKLVSGPAPDEDQSFLDDDQIQAGYILTCVAYPTGDCVIETHKEEAL 96          
BLAST of CX043297 vs. ExPASy Swiss-Prot
Match: FER_DATME (Ferredoxin OS=Datura metel PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.725e-30
Identity = 60/96 (62.50%), Postives = 78/96 (81.25%), Query Frame = 3
Query:  240 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 527
            A YK+KL+ P G   EF+  +D YILD AEE G DLPYSCRAG+CS+CAGK+ +G+VDQSDG++LDD+QM  G++LTC++YP SD  I++HKEEEL
Sbjct:    1 ATYKVKLVTPDGPV-EFDCPDDVYILDRAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMAEGFVLTCVAYPQSDVTIETHKEEEL 95          
BLAST of CX043297 vs. ExPASy Swiss-Prot
Match: FER_DATIN (Ferredoxin OS=Datura inoxia PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.725e-30
Identity = 60/96 (62.50%), Postives = 78/96 (81.25%), Query Frame = 3
Query:  240 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 527
            A YK+KL+ P G   EF+  +D YILD AEE G DLPYSCRAG+CS+CAGK+ +G+VDQSDG++LDD+QM  G++LTC++YP SD  I++HKEEEL
Sbjct:    1 ATYKVKLVTPDGPV-EFDCPDDVYILDRAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMAEGFVLTCVAYPQSDVTIETHKEEEL 95          
The following BLAST results are available for this feature:
BLAST of CX043297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER1_MAIZE3.476e-3165.31Ferredoxin-1, chloroplastic OS=Zea mays GN=FDX1 PE... [more]
FER_PANGI4.540e-3165.96Ferredoxin OS=Panax ginseng PE=1 SV=1[more]
FER1_SPIOL4.540e-3147.65Ferredoxin-1, chloroplastic OS=Spinacia oleracea G... [more]
FER_PORPU5.930e-3166.33Ferredoxin OS=Porphyra purpurea GN=petF PE=3 SV=2[more]
FER_CHLRE5.930e-3162.14Ferredoxin, chloroplastic OS=Chlamydomonas reinhar... [more]
FER_TOBAC7.744e-3164.58Ferredoxin OS=Nicotiana tabacum PE=1 SV=1[more]
FER_EUGVI1.011e-3064.58Ferredoxin OS=Euglena viridis PE=1 SV=1[more]
FER_APHSA1.011e-3063.92Ferredoxin-1 OS=Aphanothece sacrum PE=1 SV=2[more]
FER_DATME1.725e-3062.50Ferredoxin OS=Datura metel PE=1 SV=1[more]
FER_DATIN1.725e-3062.50Ferredoxin OS=Datura inoxia PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10B06_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10B06-D12-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043297 ID=CX043297; Name=CX043297; organism=Citrus sinensis; type=EST; length=727bp
ATTTCACTTGACCGCCACCCACCAACCCACTCGCCACCTCGCGCGCTCCG
CCGCTCGATCTCTTGCTTTTCTGGGTAAAGATGTCGACTGTGACACTTAG
CGCCCCGTGCATGGTTAAAGCTGCACCCAGAAATCAACTATCAAGGAACT
TAATCAAGAGCCCAACCTCACTTGGATCTGTTAAGGGCATCTCCAAGACC
TTTGGCCTGAAATGCTCTCCCAATTTCCAAGCATCAATGGCTGTCTACAA
GATTAAGCTGATTGGACCTAAGGGTGAAGAGCATGAGTTTGAGGCCCAGG
AAGACCAGTACATCCTCGATGCAGCTGAGGAAGCAGGAGTCGACCTGCCC
TATTCCTGCCGCGCTGGTGCTTGCTCGACGTGTGCTGGGAAGTTGGTGTC
TGGTTCAGTTGACCAGTCAGATGGTTCCTTCCTCGATGACAATCAAATGG
AGGCTGGTTATCTGCTGACTTGCATTTCATACCCGACTTCAGATTGCGTG
ATTCAGTCTCACAAGGAAGAAGAGCTTTGCTGAGTGCCTTTGCTGTCAGT
TGGTTTAGGGTTTTTCAAGTATGAACTGTGATCAAGTGCCTGAGTATGCT
GATAAGGTTTCTCATGGGCCTACAATATTTTTTAGATTTCAGCGTGTTGT
CTGGTGCAATGGAATCTGTAATTTTTCATTTAGTTATACTATTACTGGCA
TTTTGGGATTTAAAAAAAAAAAAAAAA
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