CX043316

Overview
NameCX043316
Unique NameCX043316
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length287
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043316 vs. ExPASy Swiss-Prot
Match: GANC_MOUSE (Neutral alpha-glucosidase C OS=Mus musculus GN=Ganc PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 2.995e-12
Identity = 36/94 (38.30%), Postives = 49/94 (52.13%), Query Frame = 3
Query:    9 YAAHWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCNRWIEVGAFYPFSWDHANYYSPRQELYQW-ESVAESARNALGMR 287
            Y A WTGDNK  W  LK SI  +L   + G+   G+D+ GF   P  EL  RW + GA+ PF   HA   + R+E + + E   +  R A+  R
Sbjct:  564 YGAVWTGDNKAEWSYLKISIPMLLTLSVSGISFCGADVGGFIGNPEAELLVRWYQAGAYQPFFRGHATMNTKRREPWLFGEEYTQLIREAIRQR 657          
BLAST of CX043316 vs. ExPASy Swiss-Prot
Match: GANC_HUMAN (Neutral alpha-glucosidase C OS=Homo sapiens GN=GANC PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.673e-12
Identity = 33/75 (44.00%), Postives = 41/75 (54.67%), Query Frame = 3
Query:    9 YAAHWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCNRWIEVGAFYPFSWDHANYYSPRQE 233
            Y A WTGDN   W +LK SI  +L   I G+   G+DI GF   P  EL  RW + GA+ PF   HA   + R+E
Sbjct:  580 YGAVWTGDNTAEWSNLKISIPMLLTLSITGISFCGADIGGFIGNPETELLVRWYQAGAYQPFFRGHATMNTKRRE 654          
BLAST of CX043316 vs. ExPASy Swiss-Prot
Match: AGL2_BACTQ (Alpha-glucosidase 2 OS=Bacillus thermoamyloliquefaciens PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.673e-12
Identity = 33/75 (44.00%), Postives = 43/75 (57.33%), Query Frame = 3
Query:    9 YAAHWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCNRWIEVGAFYPFSWDHANYYSPRQE 233
            YAA WTGDN+  WE L+ S+   +N G+ GV   G D+ GF      EL  RW++VGAF P+  +H      RQE
Sbjct:  477 YAAVWTGDNRSFWEHLQMSLPMCMNLGLSGVAFCGPDVGGFAHNTNGELLTRWMQVGAFTPYFRNHCAIGFRRQE 551          
BLAST of CX043316 vs. ExPASy Swiss-Prot
Match: GANAB_MACFA (Neutral alpha-glucosidase AB OS=Macaca fascicularis GN=GANAB PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.716e-12
Identity = 36/94 (38.30%), Postives = 53/94 (56.38%), Query Frame = 3
Query:    9 YAAHWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCNRWIEVGAFYPFSWDHANYYSPRQELYQWESV-AESARNALGMR 287
            + A WTGDN   W+ LK SI   L+ G+ G+   G+D+ GF+  P  EL  RW ++GA+ PF   HA+  + R+  +   S   +  R+ALG R
Sbjct:  611 FGAVWTGDNTAEWDHLKISIPMCLSLGLVGLSFCGADVGGFFKNPEPELLVRWYQMGAYQPFFRAHAHLDTGRRGPWLLPSQHNDIIRDALGQR 704          
BLAST of CX043316 vs. ExPASy Swiss-Prot
Match: GANAB_MOUSE (Neutral alpha-glucosidase AB OS=Mus musculus GN=Ganab PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.138e-11
Identity = 36/94 (38.30%), Postives = 53/94 (56.38%), Query Frame = 3
Query:    9 YAAHWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCNRWIEVGAFYPFSWDHANYYSPRQELYQWESVAESA-RNALGMR 287
            + A WTGDN   W+ LK SI   L+  + G+   G+D+ GF+  P  EL  RW ++GA+ PF   HA+  + R+E +   S  + A R+AL  R
Sbjct:  611 FGAVWTGDNTAEWDHLKISIPMCLSLALVGLSFCGADVGGFFKNPEPELLVRWYQMGAYQPFFRAHAHLDTGRREPWLLASQYQDAIRDALFQR 704          
BLAST of CX043316 vs. ExPASy Swiss-Prot
Match: GANC_MACFA (Neutral alpha-glucosidase C (Fragment) OS=Macaca fascicularis GN=GANC PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 1.942e-11
Identity = 33/75 (44.00%), Postives = 40/75 (53.33%), Query Frame = 3
Query:    9 YAAHWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCNRWIEVGAFYPFSWDHANYYSPRQE 233
            Y A WTGDN   W  LK SI  +L   I G+   G+DI GF   P  EL  RW + GA+ PF   HA   + R+E
Sbjct:  435 YGAVWTGDNTAEWSYLKISIPMLLTLSITGISFCGADIGGFIGNPETELLVRWYQAGAYQPFFRGHATMNAKRRE 509          
BLAST of CX043316 vs. ExPASy Swiss-Prot
Match: GANAB_DICDI (Neutral alpha-glucosidase AB OS=Dictyostelium discoideum GN=modA PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.636e-11
Identity = 30/73 (41.10%), Postives = 41/73 (56.16%), Query Frame = 3
Query:   15 AHWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCNRWIEVGAFYPFSWDHANYYSPRQE 233
            A WTGDN   W  L+ S   +L+  + G+   G+D+ GF+  P  EL  RW + GAF PF   HA+  S R+E
Sbjct:  612 AIWTGDNSAQWSHLEISNPMLLSMNLAGITFSGADVGGFFGNPDAELLTRWYQAGAFQPFFRGHAHLDSRRRE 684          
The following BLAST results are available for this feature:
BLAST of CX043316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
GANC_MOUSE2.995e-1238.30Neutral alpha-glucosidase C OS=Mus musculus GN=Gan... [more]
GANC_HUMAN6.673e-1244.00Neutral alpha-glucosidase C OS=Homo sapiens GN=GAN... [more]
AGL2_BACTQ6.673e-1244.00Alpha-glucosidase 2 OS=Bacillus thermoamyloliquefa... [more]
GANAB_MACFA8.716e-1238.30Neutral alpha-glucosidase AB OS=Macaca fasciculari... [more]
GANAB_MOUSE1.138e-1138.30Neutral alpha-glucosidase AB OS=Mus musculus GN=Ga... [more]
GANC_MACFA1.942e-1144.00Neutral alpha-glucosidase C (Fragment) OS=Macaca f... [more]
GANAB_DICDI9.636e-1141.10Neutral alpha-glucosidase AB OS=Dictyostelium disc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10C06_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10C06-F12-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043316 ID=CX043316; Name=CX043316; organism=Citrus sinensis; type=EST; length=287bp
CTGGTCATTATGCTGCACACTGGACGGGTGATAATAAGGGAACATGGGAA
GATCTAAAGTATTCTATTTCAACCATGCTGAACTTCGGCATATTTGGGGT
TCCAATGGTTGGTTCCGATATATGTGGGTTCTATCCTGCCCCAACAGAAG
AGCTTTGTAACCGATGGATAGAAGTAGGTGCATTCTATCCGTTCTCATGG
GATCATGCAAACTACTACTCCCCAAGACAGGAGCTTTATCAGTGGGAGTC
AGTAGCAGAGTCCGCCCGAAATGCTCTGGGTATGAGG
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