EL492485

Overview
NameEL492485
Unique NameEL492485
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length195
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EL492485 vs. ExPASy Swiss-Prot
Match: UBC5_YEAST (Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharomyces cerevisiae GN=UBC5 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.623e-21
Identity = 43/55 (78.18%), Postives = 51/55 (92.73%), Query Frame = 1
Query:   16 STIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 180
            ++IMGPSDSPYAGGVF ++IHFP DYPFKPPKV F TK++HPNINS+G+ICLDIL
Sbjct:   36 ASIMGPSDSPYAGGVFFLSIHFPTDYPFKPPKVNFTTKIYHPNINSSGNICLDIL 90          
BLAST of EL492485 vs. ExPASy Swiss-Prot
Match: UBC4_CANAL (Ubiquitin-conjugating enzyme E2 4 OS=Candida albicans GN=UBC4 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.052e-20
Identity = 41/55 (74.55%), Postives = 49/55 (89.09%), Query Frame = 1
Query:   16 STIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 180
            ++IMGP DSPYAGGVF ++IHFP DYP KPPK+A  TK++HPNINSNG+ICLDIL
Sbjct:   35 ASIMGPPDSPYAGGVFFLSIHFPTDYPLKPPKIALTTKIYHPNINSNGNICLDIL 89          
BLAST of EL492485 vs. ExPASy Swiss-Prot
Match: U2D2B_RAT (Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norvegicus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.998e-20
Identity = 40/55 (72.73%), Postives = 48/55 (87.27%), Query Frame = 1
Query:   16 STIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 180
            +TIMGP+DSPY GG F +TI FP +YPFKPPKV F T+++HPN+NSNGSICLDIL
Sbjct:   35 ATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDIL 89          
BLAST of EL492485 vs. ExPASy Swiss-Prot
Match: U2D2B_MOUSE (Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.998e-20
Identity = 40/55 (72.73%), Postives = 48/55 (87.27%), Query Frame = 1
Query:   16 STIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 180
            +TIMGP+DSPY GG F +TI FP +YPFKPPKV F T+++HPN+NSNGSICLDIL
Sbjct:   35 ATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDIL 89          
BLAST of EL492485 vs. ExPASy Swiss-Prot
Match: UBC12_ARATH (Probable ubiquitin-conjugating enzyme E2 12 OS=Arabidopsis thaliana GN=UBC12 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.984e-19
Identity = 42/55 (76.36%), Postives = 48/55 (87.27%), Query Frame = 1
Query:   16 STIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 180
            +TIMGP DSPY+GGVF V+I F  DYPFKPPKV F+TKV+HPNI+S GSICLDIL
Sbjct:   36 ATIMGPHDSPYSGGVFTVSIDFSSDYPFKPPKVNFKTKVYHPNIDSKGSICLDIL 90          
BLAST of EL492485 vs. ExPASy Swiss-Prot
Match: UBCD2_DROME (Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophila melanogaster GN=UbcD2 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.168e-17
Identity = 38/55 (69.09%), Postives = 44/55 (80.00%), Query Frame = 1
Query:   16 STIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 180
            STI+GP  S Y GGVF + IHF P+YPFKPPKV FRT+++H NINS G ICLDIL
Sbjct:  120 STILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDIL 174          
BLAST of EL492485 vs. ExPASy Swiss-Prot
Match: UB2E2_MOUSE (Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus GN=Ube2e2 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.572e-16
Identity = 38/55 (69.09%), Postives = 43/55 (78.18%), Query Frame = 1
Query:   16 STIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 180
            STI+GP  S Y GGVF + I F PDYPFKPPKV FRT+++H NINS G ICLDIL
Sbjct:   89 STILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDIL 143          
BLAST of EL492485 vs. ExPASy Swiss-Prot
Match: UB2E2_HUMAN (Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens GN=UBE2E2 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.572e-16
Identity = 38/55 (69.09%), Postives = 43/55 (78.18%), Query Frame = 1
Query:   16 STIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 180
            STI+GP  S Y GGVF + I F PDYPFKPPKV FRT+++H NINS G ICLDIL
Sbjct:   89 STILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDIL 143          
BLAST of EL492485 vs. ExPASy Swiss-Prot
Match: UB2E1_MOUSE (Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus GN=Ube2e1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.575e-16
Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = 1
Query:   16 STIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 180
            STI+GP  S Y GGVF + I F P+YPFKPPKV FRT+++H NINS G ICLDIL
Sbjct:   81 STILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDIL 135          
BLAST of EL492485 vs. ExPASy Swiss-Prot
Match: UB2E1_HUMAN (Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens GN=UBE2E1 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.575e-16
Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = 1
Query:   16 STIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 180
            STI+GP  S Y GGVF + I F P+YPFKPPKV FRT+++H NINS G ICLDIL
Sbjct:   81 STILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDIL 135          
The following BLAST results are available for this feature:
BLAST of EL492485 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
UBC5_YEAST1.623e-2178.18Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharo... [more]
UBC4_CANAL1.052e-2074.55Ubiquitin-conjugating enzyme E2 4 OS=Candida albic... [more]
U2D2B_RAT3.998e-2072.73Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norv... [more]
U2D2B_MOUSE3.998e-2072.73Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculu... [more]
UBC12_ARATH1.984e-1976.36Probable ubiquitin-conjugating enzyme E2 12 OS=Ara... [more]
UBCD2_DROME3.168e-1769.09Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophi... [more]
UB2E2_MOUSE1.572e-1669.09Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus... [more]
UB2E2_HUMAN1.572e-1669.09Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens... [more]
UB2E1_MOUSE4.575e-1667.27Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus... [more]
UB2E1_HUMAN4.575e-1667.27Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionC1180 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC1180, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492485 ID=EL492485; Name=EL492485; organism=Citrus sinensis; type=EST; length=195bp
CATGTTCCACTGGCAAGCACAATTATGGGCCCTTCTGATAGCCCATATGC
AGGAGGTGTATTTTTGGTTACCATTCATTTTCCTCCTGATTATCCNTTCA
AGCCCCCAAAGGTTGCTTTTAGGACCAAGGTCTTCCACCCGAACATCAAC
AGCAATGGAAGCATCTGTCTTGATATCCTTACTNCAGGACTCATC
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