EL492485

Overview
NameEL492485
Unique NameEL492485
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length195
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EL492485 vs. ExPASy Swiss-Prot
Match: UBE2K_BOVIN (Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN=UBE2K PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 4.008e-12
Identity = 33/58 (56.90%), Postives = 40/58 (68.97%), Query Frame = 1
Query:   10 LASTIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDIL 180
            L   I GP D+PY GG + + I  P  YPF PPKV F TK++HPNI+S  G+ICLDIL
Sbjct:   39 LRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDIL 96          
BLAST of EL492485 vs. ExPASy Swiss-Prot
Match: UBCD6_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=UbcD6 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 4.008e-12
Identity = 30/55 (54.55%), Postives = 39/55 (70.91%), Query Frame = 1
Query:   16 STIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 180
            + I GP D+P+  G F +TI F  +YP KPP V F +KVFHPN+ ++G ICLDIL
Sbjct:   38 AVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKVFHPNVYADGGICLDIL 92          
BLAST of EL492485 vs. ExPASy Swiss-Prot
Match: UBC13_YEAST (Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyces cerevisiae GN=UBC13 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.008e-12
Identity = 29/54 (53.70%), Postives = 38/54 (70.37%), Query Frame = 1
Query:   19 TIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 180
            TI GP  SPY  G+F + ++ P DYP + PKV F TK++HPNI+  G ICLD+L
Sbjct:   38 TIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVL 91          
BLAST of EL492485 vs. ExPASy Swiss-Prot
Match: UB2G1_RAT (Ubiquitin-conjugating enzyme E2 G1 OS=Rattus norvegicus GN=Ube2g1 PE=2 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 4.008e-12
Identity = 27/53 (50.94%), Postives = 39/53 (73.58%), Query Frame = 1
Query:   22 IMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 180
            I+GP D+ Y GGVF   + FP DYP +PPK+ F T+++HPN++ NG +C+ IL
Sbjct:   42 IIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISIL 94          
BLAST of EL492485 vs. ExPASy Swiss-Prot
Match: UB2G1_MOUSE (Ubiquitin-conjugating enzyme E2 G1 OS=Mus musculus GN=Ube2g1 PE=2 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 4.008e-12
Identity = 27/53 (50.94%), Postives = 39/53 (73.58%), Query Frame = 1
Query:   22 IMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 180
            I+GP D+ Y GGVF   + FP DYP +PPK+ F T+++HPN++ NG +C+ IL
Sbjct:   42 IIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISIL 94          
BLAST of EL492485 vs. ExPASy Swiss-Prot
Match: UB2G1_MACFA (Ubiquitin-conjugating enzyme E2 G1 OS=Macaca fascicularis GN=UBE2G1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.008e-12
Identity = 27/53 (50.94%), Postives = 39/53 (73.58%), Query Frame = 1
Query:   22 IMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 180
            I+GP D+ Y GGVF   + FP DYP +PPK+ F T+++HPN++ NG +C+ IL
Sbjct:   42 IIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISIL 94          
BLAST of EL492485 vs. ExPASy Swiss-Prot
Match: UB2G1_HUMAN (Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens GN=UBE2G1 PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 4.008e-12
Identity = 27/53 (50.94%), Postives = 39/53 (73.58%), Query Frame = 1
Query:   22 IMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 180
            I+GP D+ Y GGVF   + FP DYP +PPK+ F T+++HPN++ NG +C+ IL
Sbjct:   42 IIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISIL 94          
BLAST of EL492485 vs. ExPASy Swiss-Prot
Match: UBC7_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC7 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.234e-12
Identity = 28/53 (52.83%), Postives = 34/53 (64.15%), Query Frame = 1
Query:   22 IMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 180
            I GP D+PYA GVF   + FP DYP  PPK+ F   + HPNI  NG +C+ IL
Sbjct:   41 IQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISIL 93          
BLAST of EL492485 vs. ExPASy Swiss-Prot
Match: UBE2C_DICDI (Probable ubiquitin-conjugating enzyme E2 C OS=Dictyostelium discoideum GN=ube2c PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.836e-12
Identity = 29/54 (53.70%), Postives = 39/54 (72.22%), Query Frame = 1
Query:   19 TIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 180
            TI G  D+ Y    F +++ FP DYP+KPP V F T+ FHPN+++NG+ICLDIL
Sbjct:   41 TIQGAKDTVYEQMEFKMSLKFPTDYPYKPPTVKFETQCFHPNVDNNGNICLDIL 94          
BLAST of EL492485 vs. ExPASy Swiss-Prot
Match: UBC37_ARATH (Probable ubiquitin carrier protein E2 37 OS=Arabidopsis thaliana GN=UBC37 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.928e-12
Identity = 29/53 (54.72%), Postives = 39/53 (73.58%), Query Frame = 1
Query:   22 IMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 180
            I GP D+ YA G+F + I  P  YPF+PP V+F T ++HPNI+++G ICLDIL
Sbjct:   51 IEGPEDTVYANGIFNLKIQIPERYPFQPPIVSFATPIYHPNIDNSGRICLDIL 103          
The following BLAST results are available for this feature:
BLAST of EL492485 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
UBE2K_BOVIN4.008e-1256.90Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN... [more]
UBCD6_DROME4.008e-1254.55Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBC13_YEAST4.008e-1253.70Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyce... [more]
UB2G1_RAT4.008e-1250.94Ubiquitin-conjugating enzyme E2 G1 OS=Rattus norve... [more]
UB2G1_MOUSE4.008e-1250.94Ubiquitin-conjugating enzyme E2 G1 OS=Mus musculus... [more]
UB2G1_MACFA4.008e-1250.94Ubiquitin-conjugating enzyme E2 G1 OS=Macaca fasci... [more]
UB2G1_HUMAN4.008e-1250.94Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens... [more]
UBC7_YEAST5.234e-1252.83Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UBE2C_DICDI6.836e-1253.70Probable ubiquitin-conjugating enzyme E2 C OS=Dict... [more]
UBC37_ARATH8.928e-1254.72Probable ubiquitin carrier protein E2 37 OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionC1180 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC1180, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492485 ID=EL492485; Name=EL492485; organism=Citrus sinensis; type=EST; length=195bp
CATGTTCCACTGGCAAGCACAATTATGGGCCCTTCTGATAGCCCATATGC
AGGAGGTGTATTTTTGGTTACCATTCATTTTCCTCCTGATTATCCNTTCA
AGCCCCCAAAGGTTGCTTTTAGGACCAAGGTCTTCCACCCGAACATCAAC
AGCAATGGAAGCATCTGTCTTGATATCCTTACTNCAGGACTCATC
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