CX674728

Overview
NameCX674728
Unique NameCX674728
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX674728 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.963e-11
Identity = 69/189 (36.51%), Postives = 92/189 (48.68%), Query Frame = 3 
Query:   39 MATSAIQQSA---FAGQTALRQS---NEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHSRWAMLGALGCVFPEILSKNGVKFGEA--VWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 563
            MAT A+  S+   FA + A+RQS         VG +  G +    T    P     G DRP +    S+Q+ SYL G  PGDYG+D  GLS DPE    F + R L   EVI+ R+AMLGA+G + PE L K G+   E    WF+ G  I   G  +Y  +           ++  ++ LMGF E  R
Sbjct:    1 MATQALVSSSSLTFAAE-AVRQSFRARSLPSSVGCSRKGLVRAAAT----PPVKQGGVDRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRR 172
[Close]
BLAST of CX674728 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.963e-11
Identity = 36/66 (54.55%), Postives = 41/66 (62.12%), Query Frame = 3 
Query:  465 LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI-XXXXXXXXXXXXXXXXAFDPLGLADDPHQFA 659
            LDYLGNP+L+HAQSILAIWA QV+LMG VEGYR+                 +FDPL    DP  FA
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFA 66
The following BLAST results are available for this feature:
BLAST of CX674728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB23_PEA1.963e-1136.51Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB21_RAPSA1.963e-1154.55Chlorophyll a-b binding of LHCII type 1 protein (F... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_8C11_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-8C11-F22-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674728 ID=CX674728; Name=CX674728; organism=Citrus sinensis; type=EST; length=661bp
CTTCAGCAACAAAAGGAAAAGCTTTCGCATAAGAACATATGGCAACCTCT
GCTATCCAACAATCAGCATTTGCTGGCCAGACCGCCTTGAGGCAATCCAA
TGAGTTTGTCCGCAAGGTTGGAGTTGCTGACGGTGGCCGTATCACCATGA
GGAGGACTGTCAAATCCGCTCCCCAGAGCATCTGGTACGGCCCAGACCGC
CCAAAGTACTTGGGACCATTCTCTGAGCAAACACCATCATACTTGACTGG
TGAGTTCCCTGGTGACTATGGCTGGGATACCGCTGGTTTATCAGCAGACC
CCGAGACATTTGCTAAGAACCGTGAGCTAGAGGTGATCCACAGCAGATGG
GCAATGCTTGGAGCTCTTGGCTGCGTCTTCCCTGAAATCCTCTCCAAGAA
TGGAGTGAAGTTCGGCGAAGCAGTTTGGTTCAAGGCTGGCGCTCAAATAT
TCTCTGAAGGTGGCCTTGACTATCTTGGCAACCCCAACCTCATTCATGCT
CAGAGCATTTTGGCTATCTGGGCCTGCCAGGTTGTGCTTATGGGTTTTGT
TGAAGGATACAGAATTGGTGGCGGTCCTCTTGGTGAAGGACTTGACCCAC
TTTACCCTGGTGGTGCTTTTGACCCACTTGGTTTGGCTGATGACCCCCAT
CAATTTGCTGA
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