CX674727

Overview
NameCX674727
Unique NameCX674727
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length620
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674727 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 2.406e-61
Identity = 113/151 (74.83%), Postives = 126/151 (83.44%), Query Frame = -2
Query:  167 PEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSIWAIWPCQVVLMGFVEGYRIXXXXXXXXXXXXXXXGAFDPLGLADDPDQFAELKVKELKNGRRAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 619
            PE+L++NGVKFGEAVWFK G+QIFSEGGL YLGNP+L+HAQSI AIW CQVVLMG VEGYR+               G+FDPLGLADD + FAELKVKE+KNGR AMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  114 PELLARNGVKFGEAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDAEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264          
BLAST of CX674727 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 5.360e-61
Identity = 112/151 (74.17%), Postives = 128/151 (84.77%), Query Frame = -2
Query:  167 PEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSIWAIWPCQVVLMGFVEGYRIXXXXXXXXXXXXXXXGAFDPLGLADDPDQFAELKVKELKNGRRAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 619
            PE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSI +IW  QV+LMG VEGYR+               G+FDPLGLA+DP++ AELKVKELKNGR AMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  114 PELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264          
BLAST of CX674727 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 7.000e-61
Identity = 114/151 (75.50%), Postives = 126/151 (83.44%), Query Frame = -2
Query:  167 PEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSIWAIWPCQVVLMGFVEGYRIXXXXXXXXXXXXXXXGAFDPLGLADDPDQFAELKVKELKNGRRAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 619
            PE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSI AIW  QV+LMG VEGYRI               G+FDPLGLA+ P+ FAELKVKELKNGR AMFSMFGFFV AIVTGKGP+ENL DH+ADPV NNAW+YATNFVPGK
Sbjct:   78 PELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 228          
BLAST of CX674727 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.560e-60
Identity = 114/151 (75.50%), Postives = 124/151 (82.12%), Query Frame = -2
Query:  167 PEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSIWAIWPCQVVLMGFVEGYRIXXXXXXXXXXXXXXXGAFDPLGLADDPDQFAELKVKELKNGRRAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 619
            PE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSI AIW  QV+LMG VEGYRI               G+FDPLGLADDP+  AELKVKELKNGR AMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYAT   PGK
Sbjct:  106 PELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATKLCPGK 256          
BLAST of CX674727 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.037e-60
Identity = 111/151 (73.51%), Postives = 124/151 (82.12%), Query Frame = -2
Query:  167 PEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSIWAIWPCQVVLMGFVEGYRIXXXXXXXXXXXXXXXGAFDPLGLADDPDQFAELKVKELKNGRRAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 619
            PE+L++NGVKFGE VWFKAG+QIFSEGGL + GNP+L+HAQSI AIW CQVVLMG VEGY +               G+FDPLGL DDP++FAELKVKE+KNGR AMFSMFGFFVQAIVTGKGPIENL DH+ DPV NNAWAYATNFVPGK
Sbjct:  114 PELLARNGVKFGEGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAGGRLGEVVDPLYLGGSFDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNNAWAYATNFVPGK 264          
BLAST of CX674727 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 3.474e-60
Identity = 114/152 (75.00%), Postives = 127/152 (83.55%), Query Frame = -2
Query:  167 PEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSIWAIWPCQVVLMGFVEGYRIXXXXXXXXXXXXXXXG-AFDPLGLADDPDQFAELKVKELKNGRRAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 619
            PE+L++NGVKFGEAVWFKAG+QIFS+GGLDYLGNP+L+HAQSI AIW  QV+LMG VEGYR+               G +FDPLGLA DP+ FAELKVKELKNGR AMFSMFGFFVQAIVTGKGPIENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  116 PELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267          
BLAST of CX674727 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 3.474e-60
Identity = 113/151 (74.83%), Postives = 125/151 (82.78%), Query Frame = -2
Query:  167 PEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSIWAIWPCQVVLMGFVEGYRIXXXXXXXXXXXXXXXGAFDPLGLADDPDQFAELKVKELKNGRRAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 619
            PE+L++NGVKFGEA WFKAG+QIFSEGGLDYLGN +LIHAQSI AIW  QV+LMG VEGYRI               G+FDPL LADDP+ FAELKVKE+KNGR AMFSMFGFFVQAIVTGKGP+ENL DH+A+PV NNAWAYATNFVPGK
Sbjct:   95 PELLARNGVKFGEASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVNNNAWAYATNFVPGK 245          
BLAST of CX674727 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 3.474e-60
Identity = 114/152 (75.00%), Postives = 127/152 (83.55%), Query Frame = -2
Query:  167 PEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSIWAIWPCQVVLMGFVEGYRIXXXXXXXXXXXXXXXG-AFDPLGLADDPDQFAELKVKELKNGRRAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 619
            PE+L++NGVKFGEAVWFKAG+QIFS+GGLDYLGNP+L+HAQSI AIW  QV+LMG VEGYR+               G +FDPLGLA DP+ FAELKVKELKNGR AMFSMFGFFVQAIVTGKGPIENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  116 PELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267          
BLAST of CX674727 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 4.538e-60
Identity = 113/152 (74.34%), Postives = 127/152 (83.55%), Query Frame = -2
Query:  167 PEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSIWAIWPCQVVLMGFVEGYRIXXXXXXXXXXXXXXXG-AFDPLGLADDPDQFAELKVKELKNGRRAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 619
            PE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSI AIW  QV+LMG VEGYR+               G +FDPLGLA DP+ FAELKVKE+KNGR AMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  115 PELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266          
BLAST of CX674727 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 7.740e-60
Identity = 109/151 (72.19%), Postives = 124/151 (82.12%), Query Frame = -2
Query:  167 PEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSIWAIWPCQVVLMGFVEGYRIXXXXXXXXXXXXXXXGAFDPLGLADDPDQFAELKVKELKNGRRAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 619
            PE+ ++NGVKFGEAVW KAG+QIFSEGGLDYLGNP+L+HAQSI AIW CQV+LMG VEGYR+               G+FDPLGLA+DP+ FAELKVKE KNGR AMFSMFGFF+QAIVTGKGP+ENL DH+ DPV NNAW+YATNFVP K
Sbjct:  117 PELFARNGVKFGEAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRVAGGPLGVVVDPLYPGGSFDPLGLAEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVNNNAWSYATNFVPRK 267          
The following BLAST results are available for this feature:
BLAST of CX674727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
CB22_HORVU2.406e-6174.83Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB23_APIGR5.360e-6174.17Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PEA7.000e-6175.50Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB22_SOYBN1.560e-6075.50Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB48_MAIZE2.037e-6073.51Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB22_ARATH3.474e-6075.00Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_SOYBN3.474e-6074.83Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_ARATH3.474e-6075.00Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB21_SINAL4.538e-6074.34Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB22_PETSP7.740e-6072.19Chlorophyll a-b binding protein 22L, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_8C11_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-8C11-F22-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674727 ID=CX674727; Name=CX674727; organism=Citrus sinensis; type=EST; length=620bp
TTTTTTTTTTTTTTTTTGGAAATAAAAGATCAGGAGCATAGCATTTCTAA
TGGTAACATTACAGAGCTACTAATAAGTCCATGACAGAGTTTTCCACAAA
AGCACATACGATACATAGAATAATGTTACAGCTGAAAAAGACACCATCAA
GTCATGAGTTTCTTTACTTTCCGGGAACAAAGTTAGTGGCATAAGCCCAG
GCATTGTTGGCCACAGGATCAGCAATGTGGTCGTAGAGGTTCTCAATTGG
ACCCTTCCCAGTGACAATAGCCTGAACAAAGAATCCAAACATGGAGAACA
TAGCCCGACGGCCATTCTTGAGCTCCTTGACCTTCAACTCAGCAAATTGA
TCGGGGTCATCAGCCAAACCAAGTGGGTCAAAAGCACCACCAGGGTAAAG
TGGGTCAAGTCCTTCACCAAGAGGACCGCCACCAATTCTGTATCCTTCAA
CAAAACCCATAAGCACAACCTGGCAGGGCCAGATAGCCCAAATGCTCTGA
GCATGAATGAGGTTGGGGTTGCCAAGATAGTCAAGGCCACCTTCAGAGAA
TATTTGAGCGCCAGCCTTGAACCAAACTGCTTCGCCGAACTTCACTCCAT
TCTTGGAGAGGATTTCAGGG
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