CX674727
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX674727 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1) HSP 1 Score: 228.024 bits (580), Expect = 2.941e-59 Identity = 111/151 (73.51%), Postives = 124/151 (82.12%), Query Frame = -2 Query: 167 PEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSIWAIWPCQVVLMGFVEGYRIXXXXXXXXXXXXXXXGAFDPLGLADDPDQFAELKVKELKNGRRAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 619 PE+L++NGVKFGEA WFKAG+QIFS+GGLDYLGNP+L+HAQS+ AIW CQVVLMG VEGYRI G+FDPLGLA+ P FAELKVKE+KNGR AMFSMFGFFVQAIVTGKGP+E+L DHIADPV NNAW ATNFVPGK Sbjct: 116 PELLARNGVKFGEAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAGGPLGEIVDPLYPGGSFDPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVNNNAWLIATNFVPGK 266
BLAST of CX674727 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1) HSP 1 Score: 211.846 bits (538), Expect = 2.181e-54 Identity = 101/149 (67.79%), Postives = 118/149 (79.19%), Query Frame = -2 Query: 173 PEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSIWAIWPCQVVLMGFVEGYRIXXXXXXXXXXXXXXXGAFDPLGLADDPDQFAELKVKELKNGRRAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 619 PE+L+K+G KFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQ+I A QV+LMG +EGYR+ +FDPLGLADDPD FAELKVKE+KNGR A FSMFGFFVQAIVTGKGP++NL DH+A+P NNA+A+AT F P Sbjct: 103 PELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAFAFATKFTP 251
BLAST of CX674727 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1) HSP 1 Score: 206.453 bits (524), Expect = 9.164e-53 Identity = 106/152 (69.74%), Postives = 118/152 (77.63%), Query Frame = -2 Query: 170 PEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSIWAIWPCQVVLMGFVEGYRIXXXXXXXXXXXXXXXGA-FDPLGLADDPDQFAELKVKELKNGRRAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG 619 PE+L K GV+F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSI A+ QV+LMG VEG+RI G FDPLGLADDP FAELKVKE+KNGR AMFSMFGFFVQAIVTGKGP+ENL+DH+ DPVANNAW +AT F PG Sbjct: 116 PEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANNAWVFATKFAPG 267
BLAST of CX674727 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1) HSP 1 Score: 202.986 bits (515), Expect = 1.013e-51 Identity = 106/152 (69.74%), Postives = 116/152 (76.32%), Query Frame = -2 Query: 170 PEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSIWAIWPCQVVLMGFVEGYRIXXXXXXXXXXXXXXXGA-FDPLGLADDPDQFAELKVKELKNGRRAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG 619 PE+L K V F E VWFKAG+QIFS+GGLDYLGNPNL+HAQSI A+ QVVLMG VEG+RI G FDPLGLADDP FAELKVKE+KNGR AMFSMFGFFVQAIVTGKGP+ENL DH+ +PVANNAW YAT FVPG Sbjct: 113 PEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPG 264
BLAST of CX674727 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1) HSP 1 Score: 202.216 bits (513), Expect = 1.728e-51 Identity = 104/150 (69.33%), Postives = 114/150 (76.00%), Query Frame = -2 Query: 173 PEILSKN-GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSIWAIWPCQVVLMGFVEGYRIXXXXXXXXXXXXXXXGAFDPLGLADDPDQFAELKVKELKNGRRAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 619 PE+LS GVKFGE VWFKAGAQIFSEGGLDYLG+P LIHAQ+I A QVVLMG +EGYR+ +FDPLGLADDPD FAELKVKE+KNGR AMFS FGFFVQAIVTGKGPI+NL DH+ADP NNA+A AT F P Sbjct: 105 PELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNNAFAAATKFTP 254
BLAST of CX674727 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1) HSP 1 Score: 196.052 bits (497), Expect = 1.239e-49 Identity = 99/151 (65.56%), Postives = 116/151 (76.82%), Query Frame = -2 Query: 173 PEILS-KNGVKFGEA-VWFKAGAQIFSEGGLDYLGNPNLIHAQSIWAIWPCQVVLMGFVEGYRIXXXXXXXXXXXXXXXGAFDPLGLADDPDQFAELKVKELKNGRRAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 619 PE+L+ ++G+KFG+A +WFKAGA IF +GGL+YLGNP+LIHAQ+I A QVVLMG VEGYR+ AFDPLGLADDPD FAELKVKE+KNGR AMF+ GFFVQAIVTGKGPIENL DH+A+P NNA+AYAT F P Sbjct: 122 PELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENNAFAYATKFTP 272
BLAST of CX674727 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1) HSP 1 Score: 187.578 bits (475), Expect = 4.405e-47 Identity = 100/150 (66.67%), Postives = 112/150 (74.67%), Query Frame = -2 Query: 170 PEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSIWAIWPCQVVLMGFVEGYRIXXXXXXXXXXXXXXXGAFDPLGLADDPDQFAELKVKELKNGRRAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG 619 PE+LS G FGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSI AIW +V+LMG VEGYRI G+FD LGLA+D + FAELKVKELKNGR AMFSMFGFFVQAIV+ K +ENL DH+ V NNA + TNFVPG Sbjct: 119 PELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRI-ARGPLGEVTDPLYPGSFDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVTNFVPG 267
BLAST of CX674727 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1) HSP 1 Score: 186.422 bits (472), Expect = 9.814e-47 Identity = 98/153 (64.05%), Postives = 110/153 (71.90%), Query Frame = -2 Query: 170 PEILSKN-GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSIWAIWPCQVVLMGFVEGYRIXXXXXXXXXXXXXXXGA--FDPLGLADDPDQFAELKVKELKNGRRAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG 619 PE+LS+ GV+FGE VWFKAGAQIF++GGL+YLGN +LIHAQSI A QVVLMG E YR FDPLGLADDPD FAELKVKE+KNGR AMFS GFFVQAIVTGKGP++NL DH+ADP N A+A AT F PG Sbjct: 100 PELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFASATKFTPG 252
BLAST of CX674727 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1) HSP 1 Score: 174.096 bits (440), Expect = 5.040e-43 Identity = 86/116 (74.14%), Postives = 94/116 (81.03%), Query Frame = -2 Query: 167 NLIHAQSIWAIWPCQVVLMGFVEGYRIXXXXXXXXXXXXXXXGAFDPLGLADDPDQFAELKVKELKNGRRAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 514 +L+HAQSI AIW CQVVLMG VEGYRI G+FDPLGLA+DP+ FAELKVKE+KNGR AMFSMFGFFVQAIVTGKGP+ENL DHIADPV NNAWA+ATNFVPGK Sbjct: 152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267
BLAST of CX674727 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1) HSP 1 Score: 174.096 bits (440), Expect = 5.040e-43 Identity = 86/116 (74.14%), Postives = 94/116 (81.03%), Query Frame = -2 Query: 167 NLIHAQSIWAIWPCQVVLMGFVEGYRIXXXXXXXXXXXXXXXGAFDPLGLADDPDQFAELKVKELKNGRRAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 514 +L+HAQSI AIW CQVVLMG VEGYRI G+FDPLGLA+DP+ FAELKVKE+KNGR AMFSMFGFFVQAIVTGKGP+ENL DHIADPV NNAWA+ATNFVPGK Sbjct: 152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267 The following BLAST results are available for this feature:
BLAST of CX674727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 73
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Sequences
The
following sequences are available for this feature:
EST sequence >CX674727 ID=CX674727; Name=CX674727; organism=Citrus sinensis; type=EST; length=620bpback to top |