CX674727
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX674727 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1) HSP 1 Score: 173.711 bits (439), Expect = 6.583e-43 Identity = 85/116 (73.28%), Postives = 94/116 (81.03%), Query Frame = -2 Query: 167 NLIHAQSIWAIWPCQVVLMGFVEGYRIXXXXXXXXXXXXXXXGAFDPLGLADDPDQFAELKVKELKNGRRAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 514 +L+HAQSI AIW CQVVLMG VEGYRI G+FDPLGLA+DP+ FAELKVKE+KNGR AMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAW+YATNFVPGK Sbjct: 1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 116
BLAST of CX674727 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1) HSP 1 Score: 173.326 bits (438), Expect = 8.597e-43 Identity = 85/116 (73.28%), Postives = 94/116 (81.03%), Query Frame = -2 Query: 167 NLIHAQSIWAIWPCQVVLMGFVEGYRIXXXXXXXXXXXXXXXGAFDPLGLADDPDQFAELKVKELKNGRRAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 514 +L+HAQSI AIW CQVVLMG VEGYRI G+FDPLGLA+DP+ FAELKVKE+KNGR AMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK Sbjct: 150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265
BLAST of CX674727 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1) HSP 1 Score: 173.326 bits (438), Expect = 8.597e-43 Identity = 85/116 (73.28%), Postives = 94/116 (81.03%), Query Frame = -2 Query: 167 NLIHAQSIWAIWPCQVVLMGFVEGYRIXXXXXXXXXXXXXXXGAFDPLGLADDPDQFAELKVKELKNGRRAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 514 +L+HAQSI AIW CQVVLMG VEGYRI G+FDPLGLA+DP+ FAELKVKE+KNGR AMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK Sbjct: 150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265
BLAST of CX674727 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1) HSP 1 Score: 171.785 bits (434), Expect = 2.501e-42 Identity = 86/124 (69.35%), Postives = 96/124 (77.42%), Query Frame = -2 Query: 167 LDYLGNPNLIHAQSIWAIWPCQVVLMGFVEGYRIXXXXXXXXXXXXXXXG-AFDPLGLADDPDQFAELKVKELKNGRRAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 535 LDYLGNP+L+HAQSI AIW QV+LMG VEGYR+ G +FDPL DP+ FAELKVKE+KNGR AMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK Sbjct: 1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 124
BLAST of CX674727 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2) HSP 1 Score: 135.961 bits (341), Expect = 1.521e-31 Identity = 65/92 (70.65%), Postives = 72/92 (78.26%), Query Frame = -2 Query: 344 PEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSIWAIWPCQVVLMGFVEGYRIXXXXXXXXXXXXXXXGAFDPLGLADDPDQF 619 PE+L+KNGVKFGEAVWFKAG+QIF EGGLDYLGNPNL+HAQSI AIW CQVVLMG VEGYR+ GAFDPLGLA+DP+ F Sbjct: 114 PELLAKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWACQVVLMGAVEGYRVGGGPLGEGLDQLYPGGAFDPLGLAEDPEAF 205
BLAST of CX674727 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 9.550e-26 Identity = 69/140 (49.29%), Postives = 84/140 (60.00%), Query Frame = -2 Query: 203 PEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSIWAIWPCQVVLMGFVEGYRIXXXXXXXXXXXXXXXGAFDPLGLADDPDQFAELKVKELKNGRRAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 619 PE L+K G G EAVWFK GA + L+Y G I + A+ +VVL+G E YRI FDPLGLA DP+Q A LKVKE+KNGR AMF+M GFF+QA VTG+GP+ENL H++DP NN Sbjct: 131 PEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVLAV-VAEVVLLGGAEYYRITNGLDFEDKLHPGGP--FDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNN 265
BLAST of CX674727 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 3.072e-24 Identity = 63/117 (53.85%), Postives = 72/117 (61.54%), Query Frame = -2 Query: 173 LIHAQSIWAIWPCQVVLMGFVEGYRIXXXXXXXXXXXXXXXGA---FDPLGLADDPDQFAELKVKELKNGRRAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNA-WAYATNFVP 511 LIHA+S+ AI QV+LMG VEGYR FDPLGLADDPD F ELKVKE+KNGR AM M GF+ QAIVTG+GP+EN H+ DP A+N A T F P Sbjct: 5 LIHAKSLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTALVTQFAP 121
BLAST of CX674727 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 7.584e-15 Identity = 54/158 (34.18%), Postives = 74/158 (46.84%), Query Frame = -2 Query: 203 PEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSIWAIWPCQVVLMGFVEGYR-----------------IXXXXXXXXXXXXXXXGAFDPLGLADDPDQFAELKVKELKNGRRAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 619 PEIL K G+ E WF+ G I G +Y + + ++ ++ LMGF E R + F+PLG D ELK+KE+KNGR AM ++ G+F+QA+VTG GP +NL DH+ADPV NN Sbjct: 117 PEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 265
BLAST of CX674727 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 2.882e-14 Identity = 34/60 (56.67%), Postives = 44/60 (73.33%), Query Frame = -2 Query: 203 FDPLGLADDPDQFAELKVKELKNGRRAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 382 F+PLG D ELK+KE+KNGR AM ++ G+F+Q +VTG GP +NL DH+ADPV NN Sbjct: 208 FNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNN 267
BLAST of CX674727 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 4.162e-13 Identity = 52/141 (36.88%), Postives = 69/141 (48.94%), Query Frame = -2 Query: 203 PEILSKNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPNLIHAQSIWAIWPCQVVLMGFVEGYRIXXXXXXXXXXXXXXXGAFDPLGLADDPDQFAELKVKELKNGRRAMFSMFGFFV-QAIVTGKGPIENLYDHIADPVANN 619 P +L + G W KA +G YLGNP + ++ I + + + F E R AFDPLG + DP +F ELK+KE+KNGR AM + GF V Q+ G GP+ENL H+ADP NN Sbjct: 99 PGVLVPEALGLGN--WVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGG---AFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 232 The following BLAST results are available for this feature:
BLAST of CX674727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 73
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Sequences
The
following sequences are available for this feature:
EST sequence >CX674727 ID=CX674727; Name=CX674727; organism=Citrus sinensis; type=EST; length=620bpback to top |