CX674727

Overview
NameCX674727
Unique NameCX674727
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length620
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674727 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 6.583e-43
Identity = 85/116 (73.28%), Postives = 94/116 (81.03%), Query Frame = -2
Query:  167 NLIHAQSIWAIWPCQVVLMGFVEGYRIXXXXXXXXXXXXXXXGAFDPLGLADDPDQFAELKVKELKNGRRAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 514
            +L+HAQSI AIW CQVVLMG VEGYRI               G+FDPLGLA+DP+ FAELKVKE+KNGR AMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAW+YATNFVPGK
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 116          
BLAST of CX674727 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 8.597e-43
Identity = 85/116 (73.28%), Postives = 94/116 (81.03%), Query Frame = -2
Query:  167 NLIHAQSIWAIWPCQVVLMGFVEGYRIXXXXXXXXXXXXXXXGAFDPLGLADDPDQFAELKVKELKNGRRAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 514
            +L+HAQSI AIW CQVVLMG VEGYRI               G+FDPLGLA+DP+ FAELKVKE+KNGR AMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265          
BLAST of CX674727 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 8.597e-43
Identity = 85/116 (73.28%), Postives = 94/116 (81.03%), Query Frame = -2
Query:  167 NLIHAQSIWAIWPCQVVLMGFVEGYRIXXXXXXXXXXXXXXXGAFDPLGLADDPDQFAELKVKELKNGRRAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 514
            +L+HAQSI AIW CQVVLMG VEGYRI               G+FDPLGLA+DP+ FAELKVKE+KNGR AMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265          
BLAST of CX674727 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.501e-42
Identity = 86/124 (69.35%), Postives = 96/124 (77.42%), Query Frame = -2
Query:  167 LDYLGNPNLIHAQSIWAIWPCQVVLMGFVEGYRIXXXXXXXXXXXXXXXG-AFDPLGLADDPDQFAELKVKELKNGRRAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 535
            LDYLGNP+L+HAQSI AIW  QV+LMG VEGYR+               G +FDPL    DP+ FAELKVKE+KNGR AMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 124          
BLAST of CX674727 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 1.521e-31
Identity = 65/92 (70.65%), Postives = 72/92 (78.26%), Query Frame = -2
Query:  344 PEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSIWAIWPCQVVLMGFVEGYRIXXXXXXXXXXXXXXXGAFDPLGLADDPDQF 619
            PE+L+KNGVKFGEAVWFKAG+QIF EGGLDYLGNPNL+HAQSI AIW CQVVLMG VEGYR+               GAFDPLGLA+DP+ F
Sbjct:  114 PELLAKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWACQVVLMGAVEGYRVGGGPLGEGLDQLYPGGAFDPLGLAEDPEAF 205          
BLAST of CX674727 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 9.550e-26
Identity = 69/140 (49.29%), Postives = 84/140 (60.00%), Query Frame = -2
Query:  203 PEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSIWAIWPCQVVLMGFVEGYRIXXXXXXXXXXXXXXXGAFDPLGLADDPDQFAELKVKELKNGRRAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 619
            PE L+K G   G EAVWFK GA +     L+Y G    I    + A+   +VVL+G  E YRI                 FDPLGLA DP+Q A LKVKE+KNGR AMF+M GFF+QA VTG+GP+ENL  H++DP  NN
Sbjct:  131 PEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVLAV-VAEVVLLGGAEYYRITNGLDFEDKLHPGGP--FDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNN 265          
BLAST of CX674727 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.072e-24
Identity = 63/117 (53.85%), Postives = 72/117 (61.54%), Query Frame = -2
Query:  173 LIHAQSIWAIWPCQVVLMGFVEGYRIXXXXXXXXXXXXXXXGA---FDPLGLADDPDQFAELKVKELKNGRRAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNA-WAYATNFVP 511
            LIHA+S+ AI   QV+LMG VEGYR                     FDPLGLADDPD F ELKVKE+KNGR AM  M GF+ QAIVTG+GP+EN   H+ DP A+N   A  T F P
Sbjct:    5 LIHAKSLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTALVTQFAP 121          
BLAST of CX674727 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.584e-15
Identity = 54/158 (34.18%), Postives = 74/158 (46.84%), Query Frame = -2
Query:  203 PEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSIWAIWPCQVVLMGFVEGYR-----------------IXXXXXXXXXXXXXXXGAFDPLGLADDPDQFAELKVKELKNGRRAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 619
            PEIL K G+   E    WF+ G  I   G  +Y  +         + ++  ++ LMGF E  R                 +                 F+PLG   D     ELK+KE+KNGR AM ++ G+F+QA+VTG GP +NL DH+ADPV NN
Sbjct:  117 PEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 265          
BLAST of CX674727 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.882e-14
Identity = 34/60 (56.67%), Postives = 44/60 (73.33%), Query Frame = -2
Query:  203 FDPLGLADDPDQFAELKVKELKNGRRAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 382
            F+PLG   D     ELK+KE+KNGR AM ++ G+F+Q +VTG GP +NL DH+ADPV NN
Sbjct:  208 FNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNN 267          
BLAST of CX674727 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.162e-13
Identity = 52/141 (36.88%), Postives = 69/141 (48.94%), Query Frame = -2
Query:  203 PEILSKNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPNLIHAQSIWAIWPCQVVLMGFVEGYRIXXXXXXXXXXXXXXXGAFDPLGLADDPDQFAELKVKELKNGRRAMFSMFGFFV-QAIVTGKGPIENLYDHIADPVANN 619
            P +L    +  G   W KA       +G   YLGNP  +   ++  I   + + + F E  R                 AFDPLG + DP +F ELK+KE+KNGR AM +  GF V Q+   G GP+ENL  H+ADP  NN
Sbjct:   99 PGVLVPEALGLGN--WVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGG---AFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 232          
The following BLAST results are available for this feature:
BLAST of CX674727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
CB2D_SOLLC6.583e-4373.28Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC8.597e-4373.28Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC8.597e-4373.28Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB21_RAPSA2.501e-4269.35Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB21_SILPR1.521e-3170.65Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB26_ARATH9.550e-2649.29Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB21_EUGGR3.072e-2453.85Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB13_SOLLC7.584e-1534.18Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA2.882e-1456.67Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB121_HORVU4.162e-1336.88Chlorophyll a-b binding protein 1B-21, chloroplast... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_8C11_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-8C11-F22-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674727 ID=CX674727; Name=CX674727; organism=Citrus sinensis; type=EST; length=620bp
TTTTTTTTTTTTTTTTTGGAAATAAAAGATCAGGAGCATAGCATTTCTAA
TGGTAACATTACAGAGCTACTAATAAGTCCATGACAGAGTTTTCCACAAA
AGCACATACGATACATAGAATAATGTTACAGCTGAAAAAGACACCATCAA
GTCATGAGTTTCTTTACTTTCCGGGAACAAAGTTAGTGGCATAAGCCCAG
GCATTGTTGGCCACAGGATCAGCAATGTGGTCGTAGAGGTTCTCAATTGG
ACCCTTCCCAGTGACAATAGCCTGAACAAAGAATCCAAACATGGAGAACA
TAGCCCGACGGCCATTCTTGAGCTCCTTGACCTTCAACTCAGCAAATTGA
TCGGGGTCATCAGCCAAACCAAGTGGGTCAAAAGCACCACCAGGGTAAAG
TGGGTCAAGTCCTTCACCAAGAGGACCGCCACCAATTCTGTATCCTTCAA
CAAAACCCATAAGCACAACCTGGCAGGGCCAGATAGCCCAAATGCTCTGA
GCATGAATGAGGTTGGGGTTGCCAAGATAGTCAAGGCCACCTTCAGAGAA
TATTTGAGCGCCAGCCTTGAACCAAACTGCTTCGCCGAACTTCACTCCAT
TCTTGGAGAGGATTTCAGGG
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