CX674727

Overview
NameCX674727
Unique NameCX674727
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length620
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX674727 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.099e-13
Identity = 51/126 (40.48%), Postives = 66/126 (52.38%), Query Frame = -2 
Query:  203 WFKAGAQIFSEGG-LDYLGNPNLIHAQSIWAIWPCQVVLMGFVEGYRIXXXXXXXXXXXXXXXGAFDPLGLADDPDQFAELKVKELKNGRRAMFSMFGFFV-QAIVTGKGPIENLYDHIADPVANN 574
            W KA       GG   YLG P  +   ++  I   + + + FVE  R                GAFDPLG + DP +F ELKVKE+KNGR A+ ++ GF V Q+   G GP+ENL  H+ADP  NN
Sbjct:  113 WVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR---SMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNN 233
[Close]
BLAST of CX674727 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.523e-12
Identity = 44/121 (36.36%), Postives = 65/121 (53.72%), Query Frame = -2 
Query:  212 WFKAGAQIFSEGGLDYLGNPNLIHAQSIWAIWPCQVVLMGFVEGYRIXXXXXXXXXXXXXXXGAFDPLGLADDPDQFAELKVKELKNGRRAMFSMFGFFVQAIVTGKGPIENLYDHIADPV 574
            W  AG     +G   YLG P      ++  IW  +V+++G++E  R                  FDPLGLA DP++ A+L++ E+K+ R AM +  GF VQA  TGKGP+ N   H++DP+
Sbjct:  165 WQDAGKVELVDGS-SYLGQPLPFSISTL--IW-IEVLVIGYIEFQR--NAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPL 279
[Close]
BLAST of CX674727 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.339e-11
Identity = 44/121 (36.36%), Postives = 63/121 (52.07%), Query Frame = -2 
Query:  212 WFKAGAQIFSEGGLDYLGNPNLIHAQSIWAIWPCQVVLMGFVEGYRIXXXXXXXXXXXXXXXGAFDPLGLADDPDQFAELKVKELKNGRRAMFSMFGFFVQAIVTGKGPIENLYDHIADPV 574
            W  AG     +G   YLG P      ++  IW  +V+++G++E  R                  FDPLGLA DP + A+L++ E+K+ R AM    GF VQA  TGKGP+ N   H++DP+
Sbjct:  162 WQDAGKVELVDGS-SYLGQPLPFSISTL--IW-IEVLVIGYIEFQR--NAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPL 276
The following BLAST results are available for this feature:
BLAST of CX674727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
CB11_SOLLC7.099e-1340.48Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB4A_ARATH3.523e-1236.36Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4B_ARATH1.339e-1136.36Chlorophyll a-b binding protein CP29.2, chloroplas... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_8C11_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-8C11-F22-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674727 ID=CX674727; Name=CX674727; organism=Citrus sinensis; type=EST; length=620bp
TTTTTTTTTTTTTTTTTGGAAATAAAAGATCAGGAGCATAGCATTTCTAA
TGGTAACATTACAGAGCTACTAATAAGTCCATGACAGAGTTTTCCACAAA
AGCACATACGATACATAGAATAATGTTACAGCTGAAAAAGACACCATCAA
GTCATGAGTTTCTTTACTTTCCGGGAACAAAGTTAGTGGCATAAGCCCAG
GCATTGTTGGCCACAGGATCAGCAATGTGGTCGTAGAGGTTCTCAATTGG
ACCCTTCCCAGTGACAATAGCCTGAACAAAGAATCCAAACATGGAGAACA
TAGCCCGACGGCCATTCTTGAGCTCCTTGACCTTCAACTCAGCAAATTGA
TCGGGGTCATCAGCCAAACCAAGTGGGTCAAAAGCACCACCAGGGTAAAG
TGGGTCAAGTCCTTCACCAAGAGGACCGCCACCAATTCTGTATCCTTCAA
CAAAACCCATAAGCACAACCTGGCAGGGCCAGATAGCCCAAATGCTCTGA
GCATGAATGAGGTTGGGGTTGCCAAGATAGTCAAGGCCACCTTCAGAGAA
TATTTGAGCGCCAGCCTTGAACCAAACTGCTTCGCCGAACTTCACTCCAT
TCTTGGAGAGGATTTCAGGG
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