CX043303

Overview
NameCX043303
Unique NameCX043303
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX043303 vs. ExPASy Swiss-Prot
Match: UBIQ_ACECL (Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.428e-35
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = 3 
Query:   21 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 248
            MQIFVKTLTGKTITLEVESSDT++NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTVENVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX043303 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYCR (Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.089e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 3 
Query:   21 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 248
            MQIFVKTLTGKTI LEVESSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTIALEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX043303 vs. ExPASy Swiss-Prot
Match: UBIQ_ACACA (Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.089e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 3 
Query:   21 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 248
            MQIFVKTLTGKTITLEVESSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX043303 vs. ExPASy Swiss-Prot
Match: UBIQ_GEOCY (Ubiquitin OS=Geodia cydonium PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 9.259e-35
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = 3 
Query:   21 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 248
            MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX043303 vs. ExPASy Swiss-Prot
Match: UBIQ_CAEEL (Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 9.259e-35
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = 3 
Query:   21 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 248
            MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX043303 vs. ExPASy Swiss-Prot
Match: UBIQ_EUPEU (Ubiquitin OS=Euplotes eurystomus PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.209e-34
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 3 
Query:   21 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 248
            MQIFVKTLTGKTITL+VE SDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLDVEQSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX043303 vs. ExPASy Swiss-Prot
Match: UBIQ_AGLNE (Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.209e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3 
Query:   21 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 248
            MQIFVKTLTGKTITLEVESSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX043303 vs. ExPASy Swiss-Prot
Match: UBIQ_XENLA (Ubiquitin OS=Xenopus laevis PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.579e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3 
Query:   21 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 248
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX043303 vs. ExPASy Swiss-Prot
Match: UBIQ_SPOFR (Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.579e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3 
Query:   21 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 248
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX043303 vs. ExPASy Swiss-Prot
Match: UBIQ_RAT (Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.579e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3 
Query:   21 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 248
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of CX043303 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
UBIQ_ACECL5.428e-3596.05Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1[more]
UBIQ_TRYCR7.089e-3597.37Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1[more]
UBIQ_ACACA7.089e-3597.37Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1[more]
UBIQ_GEOCY9.259e-3596.05Ubiquitin OS=Geodia cydonium PE=3 SV=1[more]
UBIQ_CAEEL9.259e-3596.05Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 ... [more]
UBIQ_EUPEU1.209e-3496.05Ubiquitin OS=Euplotes eurystomus PE=3 SV=1[more]
UBIQ_AGLNE1.209e-3496.05Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1[more]
UBIQ_XENLA1.579e-3496.05Ubiquitin OS=Xenopus laevis PE=1 SV=1[more]
UBIQ_SPOFR1.579e-3496.05Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1[more]
UBIQ_RAT1.579e-3496.05Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10B09_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10B09-D18-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043303 ID=CX043303; Name=CX043303; organism=Citrus sinensis; type=EST; length=642bp
GTCTCTCCTCATCTGCAGCCATGCAGATCTTCGTGAAAACCCTAACGGGA
AAGACCATAACCCTAGAGGTCGAATCATCGGACACCATCGACAATGTCAA
GGCCAAGATCCAGGACAAGGAGGGGATTCCACCGGACCAGCAGCGTCTCA
TCTTCGCCGGAAAGCAGCTCGAGGACGGCAGAACCCTAGCCGACTACAAC
ATCCAAAAGGAGTCAACACTCCACCTCGTCCTCCGTCTCCGTGGTGGCGC
GAAGAAGCGTAAGAAGAAGACCTACACCAAGCCGAAAAAGATCAAGCACA
AGAAGAAGAAGGTCAAGCTCGCCGTCTTGCAGTTTTACAAGGTCGATGAT
TCTGGAAAGGTCCAGAGGCTGAGGAAGGAGTGTCCGAATGCTGAGTGTGG
AGCCGGCACCTTCATGGCTAACCACTTTGACAGGCACTACTGCGGCAAGT
GTGGACTCACCTATGTTTACCAGAAGGCTGGCGGTGATTGATCGAGATTA
GGTGGTTGTTTTGCTATTTTTAATTAGTATTAATTACTATGGTTTTTGTG
GTTCAAAAATTATGACTCTTTCGTAATTTTGTTTGACTATATACTTGTTT
GCTGGAGCGTTTTAATTAAATGGTTATCTGTTTTAAATTTTA
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