CX043302

Overview
NameCX043302
Unique NameCX043302
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043302 vs. ExPASy Swiss-Prot
Match: NEDD8_RAT (NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.080e-12
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = -2
Query:  411 SDTIDNVKAKIQDTEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 581
            +D ++ +K ++++ EGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:   20 TDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of CX043302 vs. ExPASy Swiss-Prot
Match: NEDD8_RABIT (NEDD8 OS=Oryctolagus cuniculus GN=NEDD8 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.080e-12
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = -2
Query:  411 SDTIDNVKAKIQDTEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 581
            +D ++ +K ++++ EGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:   20 TDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of CX043302 vs. ExPASy Swiss-Prot
Match: NEDD8_MOUSE (NEDD8 OS=Mus musculus GN=Nedd8 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 4.080e-12
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = -2
Query:  411 SDTIDNVKAKIQDTEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 581
            +D ++ +K ++++ EGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:   20 TDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of CX043302 vs. ExPASy Swiss-Prot
Match: NEDD8_HUMAN (NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.080e-12
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = -2
Query:  411 SDTIDNVKAKIQDTEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 581
            +D ++ +K ++++ EGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:   20 TDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of CX043302 vs. ExPASy Swiss-Prot
Match: NEDD8_BOVIN (NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.080e-12
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = -2
Query:  411 SDTIDNVKAKIQDTEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 581
            +D ++ +K ++++ EGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:   20 TDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of CX043302 vs. ExPASy Swiss-Prot
Match: RS27A_CAEEL (40S ribosomal protein S27a OS=Caenorhabditis elegans GN=ubl-1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.328e-12
Identity = 30/54 (55.56%), Postives = 38/54 (70.37%), Query Frame = -2
Query:  180 LAVLQFSKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKA 341
            LAVL++ K+D++GK+ RLRKEC    CG G FMA H +RHYCG+C  T V   A
Sbjct:   24 LAVLKYYKIDENGKITRLRKECQQPSCGGGVFMAQHANRHYCGRCHDTLVVDTA 77          
BLAST of CX043302 vs. ExPASy Swiss-Prot
Match: RS37_YEAST (40S ribosomal protein S31 OS=Saccharomyces cerevisiae GN=UBI3 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.187e-11
Identity = 31/49 (63.27%), Postives = 35/49 (71.43%), Query Frame = -2
Query:  195 LAVLQFSKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTY 341
            LAVL + KVD  GKV +LR+EC N  CGAG F+ANH DR YCGKC   Y
Sbjct:   24 LAVLSYYKVDAEGKVTKLRRECSNPTCGAGVFLANHKDRLYCGKCHSVY 72          
BLAST of CX043302 vs. ExPASy Swiss-Prot
Match: RUB3_ARATH (NEDD8-like protein RUB3 OS=Arabidopsis thaliana GN=RUB3 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.025e-11
Identity = 30/57 (52.63%), Postives = 42/57 (73.68%), Query Frame = -2
Query:  411 SDTIDNVKAKIQDTEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 581
            +DTI+ +K +I++ EGIPP  QR+++ GKQL D  T   YN+++ S LHLVL LRGG
Sbjct:   20 TDTIERIKERIEEKEGIPPVHQRIVYTGKQLADDLTAKHYNLERGSVLHLVLALRGG 76          
BLAST of CX043302 vs. ExPASy Swiss-Prot
Match: NEDD8_DICDI (NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.454e-11
Identity = 30/57 (52.63%), Postives = 42/57 (73.68%), Query Frame = -2
Query:  411 SDTIDNVKAKIQDTEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 581
            +D I  +K ++++ EGIPP QQRLIF GKQ+ D +  ++Y+I+  S LHLVL LRGG
Sbjct:   20 TDKIQRIKERVEEKEGIPPSQQRLIFGGKQMGDDKPASEYSIEGGSVLHLVLALRGG 76          
BLAST of CX043302 vs. ExPASy Swiss-Prot
Match: UBL1_SCHPO (Ubiquitin-like protein 1 OS=Schizosaccharomyces pombe GN=ubl1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.694e-11
Identity = 28/58 (48.28%), Postives = 42/58 (72.41%), Query Frame = -2
Query:  408 SDTIDNVKAKIQDTEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGA 581
            +D +  +K ++++ EGIPP QQRLI+AGKQ+ D +    Y+++  S LHLVL LRGG+
Sbjct:   20 NDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGGS 77          
The following BLAST results are available for this feature:
BLAST of CX043302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
NEDD8_RAT4.080e-1254.39NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1[more]
NEDD8_RABIT4.080e-1254.39NEDD8 OS=Oryctolagus cuniculus GN=NEDD8 PE=3 SV=1[more]
NEDD8_MOUSE4.080e-1254.39NEDD8 OS=Mus musculus GN=Nedd8 PE=1 SV=2[more]
NEDD8_HUMAN4.080e-1254.39NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1[more]
NEDD8_BOVIN4.080e-1254.39NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1[more]
RS27A_CAEEL5.328e-1255.5640S ribosomal protein S27a OS=Caenorhabditis elega... [more]
RS37_YEAST1.187e-1163.2740S ribosomal protein S31 OS=Saccharomyces cerevis... [more]
RUB3_ARATH2.025e-1152.63NEDD8-like protein RUB3 OS=Arabidopsis thaliana GN... [more]
NEDD8_DICDI3.454e-1152.63NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV... [more]
UBL1_SCHPO7.694e-1148.28Ubiquitin-like protein 1 OS=Schizosaccharomyces po... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10B09_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10B09-D18-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043302 ID=CX043302; Name=CX043302; organism=Citrus sinensis; type=EST; length=585bp
TTTTTTTTTTTTTTTTTAAAATTTAAAACAGATAACCATTTAATTAAAAC
GCTCCAGCAAACAAGTATATAGTCAAACAAAATTACGAAAGAGTCATAAT
TTTTGAACCACAAAAACCATAGTAATTAATACTAATTAAAAATAGCAAAA
CAACCACCTAATCTCGATCAATCACCGCCAGCCTTCTGGTAAACATAGGT
GAGTCCACACTTGCCGCAGTAGTGCCTGTCAAAGTGGTTAGCCATGAAGG
TGCCGGCTCCACACTCAGCATTCGGACACTCCTTCCTCAGCCTCTGGACC
TTTCCAGAATCATCGACCTTGGAAAACTGCAAGACGGCGAGCTTGACCTT
CTTCTTCTTGTGCTTGATCTTTTTCGGCTTGGTGTAGGTCTTCTTCTTAC
GCTTCTTCGCGCCACCACGGAGACGGAGGACGAGGTGGAGTGTTGACTCC
TTTTGGATGTTGTAATCGGCTAGGGTTCTGCCGTCCTCGAGCTGCTTTCC
GGCAAAGATGAGACGCTGCTGGTCCGGTGGAATCCCCTCCGTGTCCTGGA
TCTTGGCCTTGACATTGTCGATGGTGTCCGATGAT
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