CX043302

Overview
NameCX043302
Unique NameCX043302
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043302 vs. ExPASy Swiss-Prot
Match: RS27A_ORYSJ (40S ribosomal protein S27a OS=Oryza sativa subsp. japonica GN=UBQ6 PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 4.808e-21
Identity = 49/56 (87.50%), Postives = 51/56 (91.07%), Query Frame = -2
Query:  180 LAVLQFSKVDDS-GKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVY-QKA 341
            LAVLQF KVDD+ GKV RLRKECPN +CGAGTFMANHFDRHYCGKCGLTYVY QKA
Sbjct:   24 LAVLQFYKVDDATGKVTRLRKECPNNDCGAGTFMANHFDRHYCGKCGLTYVYNQKA 79          
BLAST of CX043302 vs. ExPASy Swiss-Prot
Match: RS27A_MAIZE (40S ribosomal protein S27a OS=Zea mays GN=UBF9 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.808e-21
Identity = 49/56 (87.50%), Postives = 50/56 (89.29%), Query Frame = -2
Query:  180 LAVLQFSKVDDS-GKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVY-QKA 341
            LAVLQF KVDD+ GKV RLRKECPN ECGAG FMANHFDRHYCGKCGLTYVY QKA
Sbjct:   24 LAVLQFYKVDDATGKVTRLRKECPNTECGAGVFMANHFDRHYCGKCGLTYVYNQKA 79          
BLAST of CX043302 vs. ExPASy Swiss-Prot
Match: R27AA_ARATH (40S ribosomal protein S27a-1 OS=Arabidopsis thaliana GN=UBQ15 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.827e-20
Identity = 43/54 (79.63%), Postives = 48/54 (88.89%), Query Frame = -2
Query:  180 LAVLQFSKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKA 341
            LAVLQF KVD SGKVQRL+KECP+  CG GTFMA+HFDRHYCGKCG TYV++KA
Sbjct:   24 LAVLQFYKVDGSGKVQRLKKECPSVSCGPGTFMASHFDRHYCGKCGTTYVFKKA 77          
BLAST of CX043302 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.309e-18
Identity = 44/56 (78.57%), Postives = 49/56 (87.50%), Query Frame = -2
Query:  411 DTIDNVKAKIQDTEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 578
            DT+  VK KI D EG+P DQQRLI+AGKQLED +TLADYNIQKESTLH+VLRLRGG
Sbjct:   21 DTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76          
BLAST of CX043302 vs. ExPASy Swiss-Prot
Match: RS27A_DAUCA (40S ribosomal protein S27a (Fragment) OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.710e-18
Identity = 41/44 (93.18%), Postives = 42/44 (95.45%), Query Frame = -2
Query:  210 LAVLQFSKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGK 341
            LAVLQF KVD+SGKVQRLRKECPN ECGAGTFMANHFDRHYCGK
Sbjct:   24 LAVLQFYKVDESGKVQRLRKECPNGECGAGTFMANHFDRHYCGK 67          
BLAST of CX043302 vs. ExPASy Swiss-Prot
Match: UBIL_NPVAC (Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 3.810e-18
Identity = 42/57 (73.68%), Postives = 51/57 (89.47%), Query Frame = -2
Query:  411 SDTIDNVKAKIQDTEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 581
            ++T+ ++K KI D EG+P DQQRLIFAGKQLED +T+ADYNIQKESTLH+VLRLRGG
Sbjct:   20 AETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 76          
BLAST of CX043302 vs. ExPASy Swiss-Prot
Match: RS27A_CHICK (40S ribosomal protein S27a OS=Gallus gallus GN=RPS27A PE=3 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 8.487e-18
Identity = 37/53 (69.81%), Postives = 46/53 (86.79%), Query Frame = -2
Query:  183 LAVLQFSKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 341
            LAVL++ KVD++GK+ RLR+ECP+ ECGAG FMA+HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKISRLRRECPSEECGAGVFMASHFDRHYCGKCCLTYCFNK 76          
BLAST of CX043302 vs. ExPASy Swiss-Prot
Match: RS27A_HUMAN (40S ribosomal protein S27a OS=Homo sapiens GN=RPS27A PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.108e-17
Identity = 37/53 (69.81%), Postives = 46/53 (86.79%), Query Frame = -2
Query:  183 LAVLQFSKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 341
            LAVL++ KVD++GK+ RLR+ECP+ ECGAG FMA+HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNK 76          
BLAST of CX043302 vs. ExPASy Swiss-Prot
Match: RS27A_CAVPO (40S ribosomal protein S27a OS=Cavia porcellus GN=RPS27A PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.108e-17
Identity = 37/53 (69.81%), Postives = 46/53 (86.79%), Query Frame = -2
Query:  183 LAVLQFSKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 341
            LAVL++ KVD++GK+ RLR+ECP+ ECGAG FMA+HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNK 76          
BLAST of CX043302 vs. ExPASy Swiss-Prot
Match: RS27A_BOVIN (40S ribosomal protein S27a OS=Bos taurus GN=RPS27A PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.108e-17
Identity = 37/53 (69.81%), Postives = 46/53 (86.79%), Query Frame = -2
Query:  183 LAVLQFSKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 341
            LAVL++ KVD++GK+ RLR+ECP+ ECGAG FMA+HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNK 76          
The following BLAST results are available for this feature:
BLAST of CX043302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
RS27A_ORYSJ4.808e-2187.5040S ribosomal protein S27a OS=Oryza sativa subsp. ... [more]
RS27A_MAIZE4.808e-2187.5040S ribosomal protein S27a OS=Zea mays GN=UBF9 PE=... [more]
R27AA_ARATH1.827e-2079.6340S ribosomal protein S27a-1 OS=Arabidopsis thalia... [more]
UBIL_NPVOP1.309e-1878.57Ubiquitin-like protein OS=Orgyia pseudotsugata mul... [more]
RS27A_DAUCA1.710e-1893.1840S ribosomal protein S27a (Fragment) OS=Daucus ca... [more]
UBIL_NPVAC3.810e-1873.68Ubiquitin-like protein OS=Autographa californica n... [more]
RS27A_CHICK8.487e-1869.8140S ribosomal protein S27a OS=Gallus gallus GN=RPS... [more]
RS27A_HUMAN1.108e-1769.8140S ribosomal protein S27a OS=Homo sapiens GN=RPS2... [more]
RS27A_CAVPO1.108e-1769.8140S ribosomal protein S27a OS=Cavia porcellus GN=R... [more]
RS27A_BOVIN1.108e-1769.8140S ribosomal protein S27a OS=Bos taurus GN=RPS27A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10B09_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10B09-D18-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043302 ID=CX043302; Name=CX043302; organism=Citrus sinensis; type=EST; length=585bp
TTTTTTTTTTTTTTTTTAAAATTTAAAACAGATAACCATTTAATTAAAAC
GCTCCAGCAAACAAGTATATAGTCAAACAAAATTACGAAAGAGTCATAAT
TTTTGAACCACAAAAACCATAGTAATTAATACTAATTAAAAATAGCAAAA
CAACCACCTAATCTCGATCAATCACCGCCAGCCTTCTGGTAAACATAGGT
GAGTCCACACTTGCCGCAGTAGTGCCTGTCAAAGTGGTTAGCCATGAAGG
TGCCGGCTCCACACTCAGCATTCGGACACTCCTTCCTCAGCCTCTGGACC
TTTCCAGAATCATCGACCTTGGAAAACTGCAAGACGGCGAGCTTGACCTT
CTTCTTCTTGTGCTTGATCTTTTTCGGCTTGGTGTAGGTCTTCTTCTTAC
GCTTCTTCGCGCCACCACGGAGACGGAGGACGAGGTGGAGTGTTGACTCC
TTTTGGATGTTGTAATCGGCTAGGGTTCTGCCGTCCTCGAGCTGCTTTCC
GGCAAAGATGAGACGCTGCTGGTCCGGTGGAATCCCCTCCGTGTCCTGGA
TCTTGGCCTTGACATTGTCGATGGTGTCCGATGAT
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