CX043302
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX043302 vs. ExPASy Swiss-Prot
Match: RS27A_ORYSJ (40S ribosomal protein S27a OS=Oryza sativa subsp. japonica GN=UBQ6 PE=3 SV=2) HSP 1 Score: 100.908 bits (250), Expect = 4.808e-21 Identity = 49/56 (87.50%), Postives = 51/56 (91.07%), Query Frame = -2 Query: 180 LAVLQFSKVDDS-GKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVY-QKA 341 LAVLQF KVDD+ GKV RLRKECPN +CGAGTFMANHFDRHYCGKCGLTYVY QKA Sbjct: 24 LAVLQFYKVDDATGKVTRLRKECPNNDCGAGTFMANHFDRHYCGKCGLTYVYNQKA 79
BLAST of CX043302 vs. ExPASy Swiss-Prot
Match: RS27A_MAIZE (40S ribosomal protein S27a OS=Zea mays GN=UBF9 PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 4.808e-21 Identity = 49/56 (87.50%), Postives = 50/56 (89.29%), Query Frame = -2 Query: 180 LAVLQFSKVDDS-GKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVY-QKA 341 LAVLQF KVDD+ GKV RLRKECPN ECGAG FMANHFDRHYCGKCGLTYVY QKA Sbjct: 24 LAVLQFYKVDDATGKVTRLRKECPNTECGAGVFMANHFDRHYCGKCGLTYVYNQKA 79
BLAST of CX043302 vs. ExPASy Swiss-Prot
Match: R27AA_ARATH (40S ribosomal protein S27a-1 OS=Arabidopsis thaliana GN=UBQ15 PE=1 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 1.827e-20 Identity = 43/54 (79.63%), Postives = 48/54 (88.89%), Query Frame = -2 Query: 180 LAVLQFSKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKA 341 LAVLQF KVD SGKVQRL+KECP+ CG GTFMA+HFDRHYCGKCG TYV++KA Sbjct: 24 LAVLQFYKVDGSGKVQRLKKECPSVSCGPGTFMASHFDRHYCGKCGTTYVFKKA 77
BLAST of CX043302 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.309e-18 Identity = 44/56 (78.57%), Postives = 49/56 (87.50%), Query Frame = -2 Query: 411 DTIDNVKAKIQDTEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 578 DT+ VK KI D EG+P DQQRLI+AGKQLED +TLADYNIQKESTLH+VLRLRGG Sbjct: 21 DTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76
BLAST of CX043302 vs. ExPASy Swiss-Prot
Match: RS27A_DAUCA (40S ribosomal protein S27a (Fragment) OS=Daucus carota PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 1.710e-18 Identity = 41/44 (93.18%), Postives = 42/44 (95.45%), Query Frame = -2 Query: 210 LAVLQFSKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGK 341 LAVLQF KVD+SGKVQRLRKECPN ECGAGTFMANHFDRHYCGK Sbjct: 24 LAVLQFYKVDESGKVQRLRKECPNGECGAGTFMANHFDRHYCGK 67
BLAST of CX043302 vs. ExPASy Swiss-Prot
Match: UBIL_NPVAC (Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2) HSP 1 Score: 91.2781 bits (225), Expect = 3.810e-18 Identity = 42/57 (73.68%), Postives = 51/57 (89.47%), Query Frame = -2 Query: 411 SDTIDNVKAKIQDTEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 581 ++T+ ++K KI D EG+P DQQRLIFAGKQLED +T+ADYNIQKESTLH+VLRLRGG Sbjct: 20 AETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 76
BLAST of CX043302 vs. ExPASy Swiss-Prot
Match: RS27A_CHICK (40S ribosomal protein S27a OS=Gallus gallus GN=RPS27A PE=3 SV=2) HSP 1 Score: 90.1225 bits (222), Expect = 8.487e-18 Identity = 37/53 (69.81%), Postives = 46/53 (86.79%), Query Frame = -2 Query: 183 LAVLQFSKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 341 LAVL++ KVD++GK+ RLR+ECP+ ECGAG FMA+HFDRHYCGKC LTY + K Sbjct: 24 LAVLKYYKVDENGKISRLRRECPSEECGAGVFMASHFDRHYCGKCCLTYCFNK 76
BLAST of CX043302 vs. ExPASy Swiss-Prot
Match: RS27A_HUMAN (40S ribosomal protein S27a OS=Homo sapiens GN=RPS27A PE=1 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.108e-17 Identity = 37/53 (69.81%), Postives = 46/53 (86.79%), Query Frame = -2 Query: 183 LAVLQFSKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 341 LAVL++ KVD++GK+ RLR+ECP+ ECGAG FMA+HFDRHYCGKC LTY + K Sbjct: 24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNK 76
BLAST of CX043302 vs. ExPASy Swiss-Prot
Match: RS27A_CAVPO (40S ribosomal protein S27a OS=Cavia porcellus GN=RPS27A PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.108e-17 Identity = 37/53 (69.81%), Postives = 46/53 (86.79%), Query Frame = -2 Query: 183 LAVLQFSKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 341 LAVL++ KVD++GK+ RLR+ECP+ ECGAG FMA+HFDRHYCGKC LTY + K Sbjct: 24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNK 76
BLAST of CX043302 vs. ExPASy Swiss-Prot
Match: RS27A_BOVIN (40S ribosomal protein S27a OS=Bos taurus GN=RPS27A PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.108e-17 Identity = 37/53 (69.81%), Postives = 46/53 (86.79%), Query Frame = -2 Query: 183 LAVLQFSKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 341 LAVL++ KVD++GK+ RLR+ECP+ ECGAG FMA+HFDRHYCGKC LTY + K Sbjct: 24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNK 76 The following BLAST results are available for this feature:
BLAST of CX043302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 120
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Sequences
The
following sequences are available for this feature:
EST sequence >CX043302 ID=CX043302; Name=CX043302; organism=Citrus sinensis; type=EST; length=585bpback to top |