CX043302

Overview
NameCX043302
Unique NameCX043302
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043302 vs. ExPASy Swiss-Prot
Match: RS27A_ICTPU (40S ribosomal protein S27a OS=Ictalurus punctatus GN=rps27a PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.469e-17
Identity = 37/53 (69.81%), Postives = 45/53 (84.91%), Query Frame = -2
Query:  183 LAVLQFSKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 341
            LAVL++ KVD++GK+ RLR+ECP  ECGAG FMA+HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKIHRLRRECPADECGAGVFMASHFDRHYCGKCCLTYCFNK 76          
BLAST of CX043302 vs. ExPASy Swiss-Prot
Match: RS27A_RAT (40S ribosomal protein S27a OS=Rattus norvegicus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.225e-17
Identity = 36/53 (67.92%), Postives = 45/53 (84.91%), Query Frame = -2
Query:  183 LAVLQFSKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 341
            LAVL++ KVD++GK+ RLR+ECP+ ECGAG FM +HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMGSHFDRHYCGKCCLTYCFNK 76          
BLAST of CX043302 vs. ExPASy Swiss-Prot
Match: RS27A_MOUSE (40S ribosomal protein S27a OS=Mus musculus GN=Rps27a PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.225e-17
Identity = 36/53 (67.92%), Postives = 45/53 (84.91%), Query Frame = -2
Query:  183 LAVLQFSKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 341
            LAVL++ KVD++GK+ RLR+ECP+ ECGAG FM +HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMGSHFDRHYCGKCCLTYCFNK 76          
BLAST of CX043302 vs. ExPASy Swiss-Prot
Match: RS27A_DROME (40S ribosomal protein S27a OS=Drosophila melanogaster GN=RpS27A PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.566e-16
Identity = 35/53 (66.04%), Postives = 43/53 (81.13%), Query Frame = -2
Query:  183 LAVLQFSKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 341
            LAVL++ KVD++GK+ RLR+ECP   CGAG FMA H DRHYCGKC LT+V+ K
Sbjct:   24 LAVLKYYKVDENGKIHRLRRECPGENCGAGVFMAAHEDRHYCGKCNLTFVFSK 76          
BLAST of CX043302 vs. ExPASy Swiss-Prot
Match: RS27A_NEUCR (40S ribosomal protein S27a OS=Neurospora crassa GN=ubi-3 PE=3 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 8.783e-15
Identity = 34/54 (62.96%), Postives = 43/54 (79.63%), Query Frame = -2
Query:  180 LAVLQFSKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKA 341
            LAVL++ KVD  GK++RLR+ECPN  CGAG FMA   DR YCG+C LTYV++K+
Sbjct:   24 LAVLKYYKVDSDGKIERLRRECPNETCGAGVFMAAMQDRQYCGRCHLTYVFEKS 77          
BLAST of CX043302 vs. ExPASy Swiss-Prot
Match: RUB1_DESAN (NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.555e-14
Identity = 37/57 (64.91%), Postives = 45/57 (78.95%), Query Frame = -2
Query:  411 SDTIDNVKAKIQDTEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 581
            +DTID VK ++++ EGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:   20 TDTIDRVKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of CX043302 vs. ExPASy Swiss-Prot
Match: RUB2_ORYSJ (NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.337e-14
Identity = 36/57 (63.16%), Postives = 45/57 (78.95%), Query Frame = -2
Query:  411 SDTIDNVKAKIQDTEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 581
            +DTID +K ++++ EGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:   20 TDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of CX043302 vs. ExPASy Swiss-Prot
Match: RUB1_ORYSJ (NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.337e-14
Identity = 36/57 (63.16%), Postives = 45/57 (78.95%), Query Frame = -2
Query:  411 SDTIDNVKAKIQDTEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 581
            +DTID +K ++++ EGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:   20 TDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of CX043302 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.337e-14
Identity = 36/57 (63.16%), Postives = 45/57 (78.95%), Query Frame = -2
Query:  411 SDTIDNVKAKIQDTEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 581
            +DTID +K ++++ EGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:   20 TDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of CX043302 vs. ExPASy Swiss-Prot
Match: NEDD8_DROME (NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.710e-14
Identity = 33/57 (57.89%), Postives = 44/57 (77.19%), Query Frame = -2
Query:  411 SDTIDNVKAKIQDTEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 581
            +D +D +K ++++ EGIPP QQRLIF+GKQ+ D +T ADY +Q  S LHLVL LRGG
Sbjct:   20 TDKVDRIKERVEEKEGIPPQQQRLIFSGKQMNDDKTAADYKVQGGSVLHLVLALRGG 76          
The following BLAST results are available for this feature:
BLAST of CX043302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
RS27A_ICTPU2.469e-1769.8140S ribosomal protein S27a OS=Ictalurus punctatus ... [more]
RS27A_RAT3.225e-1767.9240S ribosomal protein S27a OS=Rattus norvegicus GN... [more]
RS27A_MOUSE3.225e-1767.9240S ribosomal protein S27a OS=Mus musculus GN=Rps2... [more]
RS27A_DROME3.566e-1666.0440S ribosomal protein S27a OS=Drosophila melanogas... [more]
RS27A_NEUCR8.783e-1562.9640S ribosomal protein S27a OS=Neurospora crassa GN... [more]
RUB1_DESAN2.555e-1464.91NEDD8-like protein RUB1 OS=Deschampsia antarctica ... [more]
RUB2_ORYSJ3.337e-1463.16NEDD8-like protein RUB2 OS=Oryza sativa subsp. jap... [more]
RUB1_ORYSJ3.337e-1463.16NEDD8-like protein RUB1 OS=Oryza sativa subsp. jap... [more]
RUB1_ARATH3.337e-1463.16NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN... [more]
NEDD8_DROME9.710e-1457.89NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10B09_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10B09-D18-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043302 ID=CX043302; Name=CX043302; organism=Citrus sinensis; type=EST; length=585bp
TTTTTTTTTTTTTTTTTAAAATTTAAAACAGATAACCATTTAATTAAAAC
GCTCCAGCAAACAAGTATATAGTCAAACAAAATTACGAAAGAGTCATAAT
TTTTGAACCACAAAAACCATAGTAATTAATACTAATTAAAAATAGCAAAA
CAACCACCTAATCTCGATCAATCACCGCCAGCCTTCTGGTAAACATAGGT
GAGTCCACACTTGCCGCAGTAGTGCCTGTCAAAGTGGTTAGCCATGAAGG
TGCCGGCTCCACACTCAGCATTCGGACACTCCTTCCTCAGCCTCTGGACC
TTTCCAGAATCATCGACCTTGGAAAACTGCAAGACGGCGAGCTTGACCTT
CTTCTTCTTGTGCTTGATCTTTTTCGGCTTGGTGTAGGTCTTCTTCTTAC
GCTTCTTCGCGCCACCACGGAGACGGAGGACGAGGTGGAGTGTTGACTCC
TTTTGGATGTTGTAATCGGCTAGGGTTCTGCCGTCCTCGAGCTGCTTTCC
GGCAAAGATGAGACGCTGCTGGTCCGGTGGAATCCCCTCCGTGTCCTGGA
TCTTGGCCTTGACATTGTCGATGGTGTCCGATGAT
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