CX043302
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX043302 vs. ExPASy Swiss-Prot
Match: RS27A_ICTPU (40S ribosomal protein S27a OS=Ictalurus punctatus GN=rps27a PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 2.469e-17 Identity = 37/53 (69.81%), Postives = 45/53 (84.91%), Query Frame = -2 Query: 183 LAVLQFSKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 341 LAVL++ KVD++GK+ RLR+ECP ECGAG FMA+HFDRHYCGKC LTY + K Sbjct: 24 LAVLKYYKVDENGKIHRLRRECPADECGAGVFMASHFDRHYCGKCCLTYCFNK 76
BLAST of CX043302 vs. ExPASy Swiss-Prot
Match: RS27A_RAT (40S ribosomal protein S27a OS=Rattus norvegicus GN=Rps27a PE=1 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 3.225e-17 Identity = 36/53 (67.92%), Postives = 45/53 (84.91%), Query Frame = -2 Query: 183 LAVLQFSKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 341 LAVL++ KVD++GK+ RLR+ECP+ ECGAG FM +HFDRHYCGKC LTY + K Sbjct: 24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMGSHFDRHYCGKCCLTYCFNK 76
BLAST of CX043302 vs. ExPASy Swiss-Prot
Match: RS27A_MOUSE (40S ribosomal protein S27a OS=Mus musculus GN=Rps27a PE=2 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 3.225e-17 Identity = 36/53 (67.92%), Postives = 45/53 (84.91%), Query Frame = -2 Query: 183 LAVLQFSKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 341 LAVL++ KVD++GK+ RLR+ECP+ ECGAG FM +HFDRHYCGKC LTY + K Sbjct: 24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMGSHFDRHYCGKCCLTYCFNK 76
BLAST of CX043302 vs. ExPASy Swiss-Prot
Match: RS27A_DROME (40S ribosomal protein S27a OS=Drosophila melanogaster GN=RpS27A PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 3.566e-16 Identity = 35/53 (66.04%), Postives = 43/53 (81.13%), Query Frame = -2 Query: 183 LAVLQFSKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 341 LAVL++ KVD++GK+ RLR+ECP CGAG FMA H DRHYCGKC LT+V+ K Sbjct: 24 LAVLKYYKVDENGKIHRLRRECPGENCGAGVFMAAHEDRHYCGKCNLTFVFSK 76
BLAST of CX043302 vs. ExPASy Swiss-Prot
Match: RS27A_NEUCR (40S ribosomal protein S27a OS=Neurospora crassa GN=ubi-3 PE=3 SV=3) HSP 1 Score: 80.1073 bits (196), Expect = 8.783e-15 Identity = 34/54 (62.96%), Postives = 43/54 (79.63%), Query Frame = -2 Query: 180 LAVLQFSKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKA 341 LAVL++ KVD GK++RLR+ECPN CGAG FMA DR YCG+C LTYV++K+ Sbjct: 24 LAVLKYYKVDSDGKIERLRRECPNETCGAGVFMAAMQDRQYCGRCHLTYVFEKS 77
BLAST of CX043302 vs. ExPASy Swiss-Prot
Match: RUB1_DESAN (NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 2.555e-14 Identity = 37/57 (64.91%), Postives = 45/57 (78.95%), Query Frame = -2 Query: 411 SDTIDNVKAKIQDTEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 581 +DTID VK ++++ EGIPP QQRLI+AGKQL D +T DYNI+ S LHLVL LRGG Sbjct: 20 TDTIDRVKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76
BLAST of CX043302 vs. ExPASy Swiss-Prot
Match: RUB2_ORYSJ (NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 3.337e-14 Identity = 36/57 (63.16%), Postives = 45/57 (78.95%), Query Frame = -2 Query: 411 SDTIDNVKAKIQDTEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 581 +DTID +K ++++ EGIPP QQRLI+AGKQL D +T DYNI+ S LHLVL LRGG Sbjct: 20 TDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76
BLAST of CX043302 vs. ExPASy Swiss-Prot
Match: RUB1_ORYSJ (NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 3.337e-14 Identity = 36/57 (63.16%), Postives = 45/57 (78.95%), Query Frame = -2 Query: 411 SDTIDNVKAKIQDTEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 581 +DTID +K ++++ EGIPP QQRLI+AGKQL D +T DYNI+ S LHLVL LRGG Sbjct: 20 TDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76
BLAST of CX043302 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=2) HSP 1 Score: 78.1814 bits (191), Expect = 3.337e-14 Identity = 36/57 (63.16%), Postives = 45/57 (78.95%), Query Frame = -2 Query: 411 SDTIDNVKAKIQDTEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 581 +DTID +K ++++ EGIPP QQRLI+AGKQL D +T DYNI+ S LHLVL LRGG Sbjct: 20 TDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76
BLAST of CX043302 vs. ExPASy Swiss-Prot
Match: NEDD8_DROME (NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 9.710e-14 Identity = 33/57 (57.89%), Postives = 44/57 (77.19%), Query Frame = -2 Query: 411 SDTIDNVKAKIQDTEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 581 +D +D +K ++++ EGIPP QQRLIF+GKQ+ D +T ADY +Q S LHLVL LRGG Sbjct: 20 TDKVDRIKERVEEKEGIPPQQQRLIFSGKQMNDDKTAADYKVQGGSVLHLVLALRGG 76 The following BLAST results are available for this feature:
BLAST of CX043302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 120
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Sequences
The
following sequences are available for this feature:
EST sequence >CX043302 ID=CX043302; Name=CX043302; organism=Citrus sinensis; type=EST; length=585bpback to top |