CX044436

Overview
NameCX044436
Unique NameCX044436
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX044436 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 9.381e-45
Identity = 76/133 (57.14%), Postives = 101/133 (75.94%), Query Frame = -3
Query:  186 QYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 584
            +YYGRGPIQ+++N NY   G+A+G +LL+NPDL+A+D  +SFK+A WFWMT Q PKPSCH V+  +W P+ ND  AGR+PGYG+ TNIINGG+ECG+  +  V +RIGF+  +C   G+  G NLDC NQRP+
Sbjct:  189 KYYGRGPIQISYNYNYGPAGQAIGSNLLSNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVMTGQWTPNGNDQAAGRVPGYGVVTNIINGGVECGHGADSRVADRIGFYKRYCDMLGVSYGANLDCYNQRPF 321          
BLAST of CX044436 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.225e-44
Identity = 82/136 (60.29%), Postives = 102/136 (75.00%), Query Frame = -3
Query:  186 PGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 590
            PG+ YYGRGPIQL+ N NY   G A+GVDLL NPDL+ATDP +SFK+A+WFWMTAQ PKPS H VI  +W PS  D  AGR+PG+G+ TNI+NGGIECG+  +  V +RIGF+  +C    +  G+NLDC NQRP+
Sbjct:  185 PGKSYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILRVGYGNNLDCYNQRPF 320          
BLAST of CX044436 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.600e-44
Identity = 83/136 (61.03%), Postives = 102/136 (75.00%), Query Frame = -3
Query:  186 PGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 590
            PG+ YYGRGPIQL+ N NY   G A+GVDLL NPDL+ATD  + FK+AIWFWMTAQPPKPS H VI  +W PS  D  AGR+PG+G+ TNIINGGIECG+  +  V +RIGF+  +C   G+  G+NLDC +QRP+
Sbjct:  130 PGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLANPDLVATDATVGFKTAIWFWMTAQPPKPSSHAVIAGQWSPSGADRAAGRVPGFGVITNIINGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCYSQRPF 265          
BLAST of CX044436 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.729e-44
Identity = 81/132 (61.36%), Postives = 98/132 (74.24%), Query Frame = -3
Query:  186 YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 581
            +YGRGPIQLT   NY   G+A+G DL+NNPDL+ATD  +SFK+AIWFWMTAQ  KPSCH+VI  +W PSA D +A R PGYG+ TNIINGGIECG   N  V +RIGF+  +C    + PGDNLDC +QR +
Sbjct:  113 FYGRGPIQLTGQSNYDLAGQAIGQDLVNNPDLVATDATVSFKTAIWFWMTAQGNKPSCHDVITGQWTPSAADASANRQPGYGVITNIINGGIECGKGQNPQVEDRIGFYRRYCTILNVAPGDNLDCYDQRNF 244          
BLAST of CX044436 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 3.565e-44
Identity = 79/135 (58.52%), Postives = 99/135 (73.33%), Query Frame = -3
Query:  186 QYYGRGPIQLTWNCNYLRCGEALGV--DLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 584
            +YYGRGPIQLT   NY R G+ +GV  +L+NNPDL+ATDP++SFK+AIWFWMT Q  KPSCH VII +W PS  D  A R+PGYG+ TNIING  ECG   N A  +RIGF+  +CG   +  G+NLDC+NQ+ +
Sbjct:  116 RYYGRGPIQLTHQSNYERAGQGIGVGQELVNNPDLVATDPIISFKTAIWFWMTEQDNKPSCHNVIIGQWTPSPKDTAANRVPGYGVITNIINGQFECGMGPNTAAESRIGFYRRYCGMLNVPTGENLDCNNQKNF 250          
BLAST of CX044436 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 1.037e-43
Identity = 77/134 (57.46%), Postives = 100/134 (74.63%), Query Frame = -3
Query:  183 QYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYG 584
            +YYGRGPIQL++N NY   G+A+G DLL +PDL+A+D  +SF +A WFWMT Q PKPSCH V   +W PSA+D  AGR+PGYG+ TNIINGG+ECG+  +D V +RIGF+  +C   G+    NLDC +QRP+G
Sbjct:  192 KYYGRGPIQLSYNFNYGPAGQAIGADLLGDPDLVASDATVSFDTAFWFWMTPQSPKPSCHAVATGQWTPSADDQAAGRVPGYGVITNIINGGLECGHGEDDRVADRIGFYKRYCDILGVSYDANLDCYSQRPFG 325          
BLAST of CX044436 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.769e-43
Identity = 81/133 (60.90%), Postives = 97/133 (72.93%), Query Frame = -3
Query:  186 QYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 584
            +YYGRGPIQLT   NY + G A+  DL+NNPDL+ATD  +SFK+AIWFWMT Q  KPS H+VII  W PSA D +A R PG G+ TNIINGGIECG   N AV +RIG++  +CG   + PGDNLDC NQR +
Sbjct:  118 RYYGRGPIQLTNQNNYEKAGNAIRQDLVNNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGSWTPSAADQSANRAPGCGVITNIINGGIECGVGPNAAVEDRIGYYRRYCGMLNVAPGDNLDCYNQRNF 250          
BLAST of CX044436 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.018e-43
Identity = 79/118 (66.95%), Postives = 96/118 (81.36%), Query Frame = -3
Query:  240 PGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCG 590
            PG+ Y+GRGPIQ++ N NY  CG A+GVDLLNNPDL+ATDPV+SFKSAIWFWMT Q PKPSCH+VII  W+PSA D  A RLPG+G+ TNIINGG+ECG   +  V++RIGF+  +CG
Sbjct:  184 PGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSAIWFWMTPQSPKPSCHDVIIGRWQPSAADRAANRLPGFGVITNIINGGLECGRGSDSRVQDRIGFYRRYCG 301          
BLAST of CX044436 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 9.708e-42
Identity = 79/132 (59.85%), Postives = 94/132 (71.21%), Query Frame = -3
Query:  186 YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 581
            YYGRGPIQLT   NY   G+A+  DL+NNPDL+ATD  +SFK+AIWFWMT Q  KPSCH+VI   W PSA D +A R+PGYG+ TNIINGGIECG   N  V +RIG++        + PGDNLDC NQR +
Sbjct:  120 YYGRGPIQLTGQSNYDLAGKAIEQDLVNNPDLVATDATVSFKTAIWFWMTPQGNKPSCHDVITGRWTPSAADTSANRVPGYGVITNIINGGIECGKGQNARVEDRIGYYRRNVSIMNVAPGDNLDCYNQRNF 251          
BLAST of CX044436 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 9.086e-40
Identity = 74/127 (58.27%), Postives = 90/127 (70.87%), Query Frame = -3
Query:  171 NCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVG-NDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLM 548
            N NY  CG+ L + LL  P+L+ TDP ++FK+A+WFWMT Q PKPSCH VI + W PSA D  AGR+PGYG+ TNIINGGIECG  G N+A  NRIGF+ T+C   G   G NLDC  QRP+G  L+
Sbjct:  171 NYNYGLCGDDLNLPLLQEPELVETDPFIAFKTALWFWMTPQSPKPSCHAVITESWTPSAADSEAGRVPGYGVITNIINGGIECGQGGPNNANENRIGFYKTYCDSLGTTYGSNLDCYQQRPFGYGLL 297          
The following BLAST results are available for this feature:
BLAST of CX044436 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI1_ORYSJ9.381e-4557.14Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIA_SECCE1.225e-4460.29Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHI2_HORVU1.600e-4461.0326 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHIB_SOLLC2.729e-4461.36Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIA_SOLLC3.565e-4458.52Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI12_ORYSJ1.037e-4357.46Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIP_TOBAC1.769e-4360.90Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHI4_SOLTU3.018e-4366.95Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]
CHIT_PETHY9.708e-4259.85Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHIB_POPTR9.086e-4058.27Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_17E08_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-17E08-J15-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044436 ID=CX044436; Name=CX044436; organism=Citrus sinensis; type=EST; length=628bp
CTCATTGATCCATGTTGGATCAGTCTTATTTAATTTACTTACAATAAGAG
CGTAACAAACTAACAATTTAGTTGTCCACCTACAAGTGTGACATCTAAAG
TTTTTATTAAGTAGCTTTTATTAAGCTTATTTTACTAAAACGTTGATCAT
GATGATCACATAGATTGTGCCATCAGATTAAGGCCATAAGGCCGTTGGTT
GGAGCAATCAAGATTGTCACCAGGCTGAATCCCAAACTTGCCACAGAAAG
TGGTAAAGAACCCAATACGGTTACGTACAGCGTCATTCCCAACGTAGCCA
CATTCAATTCCACCGTTGATTATATTTGTGGTTAGACCGTATCCCGGAAG
CCGGCCGGCGTTTACGTCATTTGCTGATGGTTTCCATTCGTCGATAATGA
CTTCGTGGCACGATGGCTTTGGTGGCTGTGCAGTCATCCAGAACCAGATT
GCTGACTTGAATGATAGTACTGGATCAGTGGCAAGTAGGTCTGGATTGTT
CAACAAGTCCACCCCCAAGGCTTCTCCGCACCTTAAGTAATTGCAATTCC
AAGTGAGTTGAATTGGACCTCGGCCATAGTATTGCCCTGGCAAGGGACAT
GGACAGTAAGGATAACAGTAGTCGGACG
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