CV886758

Overview
NameCV886758
Unique NameCV886758
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV886758 vs. ExPASy Swiss-Prot
Match: WRBA_OLICO (Flavoprotein wrbA OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=wrbA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.177e-32
Identity = 82/200 (41.00%), Postives = 107/200 (53.50%), Query Frame = -2
Query:  215 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHIAGIAKKLKG 811
            TKV ++YYS YGH+E +A  + +GA    G    + +VPE +P EV            P+    +LA  D  + G  TRFG M++Q   FLD  GGLW    L GK  G F            T  + IT L+H GM+ V + Y F AG   +++V GG+PYGA T   GDGSR P+E EL  A +QG+ IA  AKKL G
Sbjct:    2 TKVLVLYYSAYGHIEAMANAVAEGAREA-GASVDIKRVPELVPAEVAKAAHFKLDQAAPVAKVEDLANYDAIIVGTGTRFGRMSSQMANFLDQAGGLWAKGALHGKVGGAFTSTATQHGGQEMTLFSIITNLLHFGMVVVGLNYGF-AGQMGVKEVTGGAPYGATTITDGDGSRLPSENELNGARYQGRTIAETAKKLHG 199          
BLAST of CV886758 vs. ExPASy Swiss-Prot
Match: WRBA_RHOP5 (Flavoprotein wrbA OS=Rhodopseudomonas palustris (strain BisA53) GN=wrbA PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.418e-32
Identity = 82/199 (41.21%), Postives = 109/199 (54.77%), Query Frame = -2
Query:  215 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAG-DGSRQPTELELEQAFHQGKHIAGIAKKLKG 808
            KV ++YYS YGH+E +A+ + +GA +  G    + +VPE +P EV            P+ + ++LA  D  + G  TRFG MA+Q   FLD  GGLW    L GK  G F            T  + IT L+H GM+ V + Y F AG   +++V GGSPYGA T  G DGSRQP+  EL  A +QG+ IA  A KL G
Sbjct:    3 KVLVLYYSAYGHIETMAQAVAEGARAA-GATVDIKRVPELVPAEVAKASHYKLDQAAPVASIDDLANYDAIIVGTGTRFGRMASQMANFLDQAGGLWAKGALHGKVGGAFTSTATQHGGQETTLFSIITNLLHFGMVVVGLNYGF-AGQMTLDEVTGGSPYGATTITGGDGSRQPSANELAGARYQGQVIAETAIKLHG 199          
BLAST of CV886758 vs. ExPASy Swiss-Prot
Match: WRBA_RHOPB (Flavoprotein wrbA OS=Rhodopseudomonas palustris (strain BisB18) GN=wrbA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.512e-31
Identity = 80/199 (40.20%), Postives = 107/199 (53.77%), Query Frame = -2
Query:  215 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTF-AGDGSRQPTELELEQAFHQGKHIAGIAKKLKG 808
            KV ++YYS YGH+E +A  + +GA    G    + +VPE +P E+            PI T ++LA  D  + G  TRFG + +Q   FLD  GGLW    L GK  G F            T  + IT L+H GM+ V + Y +G G+  +++V GGSPYGA T   GDG+RQP+  EL  A +QGK IA  A KL G
Sbjct:    3 KVLVLYYSAYGHIETMANAVAEGAREA-GATVDIKRVPELVPPEIAKASHYKLDQAAPIATVDDLANYDAIIIGTGTRFGRITSQMANFLDQAGGLWAKGVLHGKVGGAFTSTASQHGGQETTLFSIITNLLHFGMVVVGLNYGYG-GLTTLDEVAGGSPYGATTITGGDGARQPSANELGGARYQGKVIAETAIKLHG 199          
BLAST of CV886758 vs. ExPASy Swiss-Prot
Match: WRBA_NITWN (Flavoprotein wrbA OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=wrbA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.512e-31
Identity = 82/199 (41.21%), Postives = 107/199 (53.77%), Query Frame = -2
Query:  215 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHIAGIAKKLKG 808
            KV ++YYS YGH+E +A  +  GA    G    + +VPE +PE V            P+   ++LA+ D  V G  TRFG M++Q  +FLD  GGLW    L GK  G F            T  + IT L+H GM  V + Y F AG   +++V GG+PYGA T A GDGSR P+E EL  A +QG+ IA  A KL G
Sbjct:    3 KVLVLYYSAYGHIEAMANAVADGARQA-GATVDVKRVPELVPEAVAKAKYFKLDQAAPLAKVDDLADYDAIVVGTGTRFGRMSSQMASFLDQAGGLWARGALHGKVGGAFSSSATQHGGQETTLFSIITNLLHFGMTIVGLNYGF-AGQMGVKEVTGGAPYGATTIADGDGSRPPSENELAGARYQGRMIAETAAKLHG 199          
BLAST of CV886758 vs. ExPASy Swiss-Prot
Match: WRBA_RHOP2 (Flavoprotein wrbA OS=Rhodopseudomonas palustris (strain HaA2) GN=wrbA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.276e-30
Identity = 79/199 (39.70%), Postives = 105/199 (52.76%), Query Frame = -2
Query:  215 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTF-AGDGSRQPTELELEQAFHQGKHIAGIAKKLKG 808
            KV ++YYS YGH+E +A  + +GA    G    + +VPE +P +V            P+ T ++LA  D  + G  TRFG MA+Q   FLD  GGLW    L GK  G F            T  + IT L+H GM+ V + Y F  G   + ++ GG+PYGA T   GDG+RQP+  EL  A +QGK IA  A KL G
Sbjct:    3 KVLVLYYSAYGHIETMANAVAEGAREA-GATVDIKRVPELVPPDVAKASYYKLDQAAPVATIDDLANYDAIIVGTGTRFGRMASQMANFLDQAGGLWAKGALNGKVGGAFTSTATQHGGQETTLFSIITNLLHFGMVVVGLNYGF-QGQMTLGEITGGAPYGATTLTGGDGARQPSANELAGARYQGKTIAETAIKLHG 199          
BLAST of CV886758 vs. ExPASy Swiss-Prot
Match: RFS1_YEAST (Protein RFS1 OS=Saccharomyces cerevisiae GN=RFS1 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.252e-20
Identity = 76/202 (37.62%), Postives = 105/202 (51.98%), Query Frame = -2
Query:  248 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVP------ETLPEEVLGKMSAPPKS-----DVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDA-TGGLWRTQQLAGKPAGMFYXXXXXXXXXXXTA-LTAITQLVHHGMIFVPIGYTFG-AGMFEMEKVKGGSPYGAGTFAG-DGSRQPTELELEQAFHQGK 808
            KV I+ YS+   +  LAE  KKG   + G EA+++QVP      E   EE  GK +A            I+T   L E D ++FG PT+FG   A++K+F D+ TGGLW    L GK AG+F               + A++ LVHHG+I+VP+GY      + ++E V G   +GAG  +G DG R P+  EL     QGK
Sbjct:    3 KVAILIYSVDDIIATLAENEKKGIE-IAGGEAEIFQVPDVSYKTEYATEE--GKEAAKVAKTNADFSYKILTRETLVEYDYYLFGIPTKFGNFPAEWKSFWDSNTGGLWAKGSLHGKIAGLFVSGAISGKGDTEMCIMNAMSTLVHHGVIYVPLGYKNAYKELTDVEDVNGSCAWGAGCVSGIDGGRPPSLSELRVHQLQGK 201          
The following BLAST results are available for this feature:
BLAST of CV886758 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
WRBA_OLICO3.177e-3241.00Flavoprotein wrbA OS=Oligotropha carboxidovorans (... [more]
WRBA_RHOP55.418e-3241.21Flavoprotein wrbA OS=Rhodopseudomonas palustris (s... [more]
WRBA_RHOPB3.512e-3140.20Flavoprotein wrbA OS=Rhodopseudomonas palustris (s... [more]
WRBA_NITWN3.512e-3141.21Flavoprotein wrbA OS=Nitrobacter winogradskyi (str... [more]
WRBA_RHOP22.276e-3039.70Flavoprotein wrbA OS=Rhodopseudomonas palustris (s... [more]
RFS1_YEAST1.252e-2037.62Protein RFS1 OS=Saccharomyces cerevisiae GN=RFS1 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_025A07_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_025_T7_A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV886758 ID=CV886758; Name=CV886758; organism=Citrus sinensis; type=EST; length=857bp
ATTTATGTAAGAAGAAGTACAAATAATCAACCAAGCAACTTTTTATCATG
AAGAAAAGCCACTATATGACACACGCACAAAGCTTATACTGATAACAAAG
CAAGAATTTATTGTTTGCAAACCAGAAGATATAGGAAACCGGGAATTCTA
GAGACGAAAAGAATGGAATAAGTCCACCTAATGGTTGTATTGTAAATTGA
AATATTTAAGCACTTCCCTTCAGCTTCTTTGCAATGCCCGCAATGTGTTT
TCCCTGGTGGAAAGCTTGCTCCAACTCAAGCTCAGTTGGCTGTCTCGAGC
CATCTCCAGCAAAAGTTCCTGCACCGTAGGGACTTCCACCTTTCACTTTC
TCCATCTCAAACATGCCAGCACCAAATGTGTATCCAATAGGAACAAATAT
CATCCCATGGTGAACAAGCTGAGTAATTGCCGTCAACGCTGTAGTCTCTT
GTCCACCACCTTGTGACCCAGTGCTGTAGAACATCCCAGCAGGTTTGCCA
GCGAGCTGTTGTGTCCTCCATAGACCACCAGTAGCATCTAAAAATGCTTT
AAATTGAGCAGCCATCATTCCAAATCTTGTTGGGAAGCCAAAAACAAACC
CATCAGCCTCAGCAAGTTCGTTGGGGGTAATAATAGGTACATCACTCTTT
GGTGGTGCACTCATCTTACCAAGTACCTCCTCAGGTAGTGTCTCAGGGAC
CTGCCATAATTTGGCTTCAACACCCTCAACAGATGAAGCTCCTTTCTTTA
TCTCTTCTGCCAGTTTCTCTACATGTCCATACATGGAATAGTACACAATA
TACACTTTGGTTGCCATCTCTTAAGGAGTCTTCTTCGACGAGTCTCTGTT
ACTTCCT
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