CV886758

Overview
NameCV886758
Unique NameCV886758
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV886758 vs. ExPASy Swiss-Prot
Match: WRBA_SALPB (Flavoprotein wrbA OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=wrbA PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 3.063e-43
Identity = 90/199 (45.23%), Postives = 125/199 (62.81%), Query Frame = -2
Query:  215 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHIAGIAKKLKG 808
            K+ ++YYSMYGH+E +A  + +GA  V+G E  + +VPET+P E+  K     ++  P+ TP ELA+ D  +FG PTRFG M+ Q + FLD TGGLW +  L GK  G  +           T  +  T L HHGM+ VPIGY     +F++  V+GG+PYGA T A GDGSRQP++ EL  A +QG+++AG+A KL G
Sbjct:    3 KILVLYYSMYGHIETMAHAVAEGAKKVDGAEVIIKRVPETMPPEIFAKAGGKTQN-APVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGK-LGSVFSSTGTGGGQEQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSHVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG 198          
BLAST of CV886758 vs. ExPASy Swiss-Prot
Match: WRBA_SALPA (Flavoprotein wrbA OS=Salmonella paratyphi A GN=wrbA PE=3 SV=3)

HSP 1 Score: 175.637 bits (444), Expect = 3.063e-43
Identity = 90/199 (45.23%), Postives = 125/199 (62.81%), Query Frame = -2
Query:  215 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHIAGIAKKLKG 808
            K+ ++YYSMYGH+E +A  + +GA  V+G E  + +VPET+P E+  K     ++  P+ TP ELA+ D  +FG PTRFG M  Q + FLD TGGLW +  L GK  G  +           T  +  T L HHGM+ VPIGY     +F++ +V+GG+PYGA T A GDGSRQP++ EL  A +QG+++AG+A KL G
Sbjct:    3 KILVLYYSMYGHIETMAHAVAEGAKKVDGAEVIIKRVPETMPPEIFAKAGGKTQN-APVATPQELADYDAIIFGTPTRFGNMPGQMRTFLDQTGGLWASGALYGK-LGSVFSSTGTGGGQEQTITSTWTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG 198          
BLAST of CV886758 vs. ExPASy Swiss-Prot
Match: WRBA_PARL1 (Flavoprotein wrbA OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=wrbA PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 3.063e-43
Identity = 90/199 (45.23%), Postives = 119/199 (59.80%), Query Frame = -2
Query:  218 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHIAGIAKKLK 811
            TKV ++Y+S YGH+E LA+ + +GA+S  G E  L +VPET+P + +       + + P+ TP EL + D  +FG PTRFG M  Q + FLD TGGLW    L GK  G  +           T  +  T L HHGM+ V + Y+ G  +F++ +V+GGSPYGA T A GDG RQPTE EL  A  QG H+A IA KLK
Sbjct:    5 TKVLVLYHSSYGHIETLAKAVAEGAASQAGTEVLLKRVPETMPADAMANAGMKVEQEAPVATPQELGDYDAVIFGTPTRFGNMTGQMRTFLDQTGGLWAKGALVGK-VGSVFTSTGTGGGNETTITSFHTNLFHHGMVVVGLPYSVGTELFDISEVRGGSPYGASTLAGGDGKRQPTEKELSLARKQGAHVASIAAKLK 202          
BLAST of CV886758 vs. ExPASy Swiss-Prot
Match: WRBA_YERE8 (Flavoprotein wrbA OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=wrbA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.164e-42
Identity = 92/197 (46.70%), Postives = 117/197 (59.39%), Query Frame = -2
Query:  221 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHIAGIAKKL 808
            K+ ++YYSMYGH+E LA  I +GA  V+GVE  + +VPET+P +   K         P+ TP ELA+  G +FG PTRFG MA Q + FLD TGGLW +  L GK A +F               T  T L HHG I VPIGY     +F++ + +GG+PYGA T A GDGSRQP+  EL  A  QG+H+A I  KL
Sbjct:    3 KILVLYYSMYGHIETLASAIAEGAQKVDGVEVTIKRVPETMPADAFAKAGGKTDQKAPVATPQELADYHGIIFGTPTRFGNMAGQMRTFLDQTGGLWASGALYGKVASVFASTGTGGGQEHTITST-WTTLAHHGFIIVPIGYG-ATELFDVSQTRGGTPYGATTIAGGDGSRQPSAEELAIARFQGEHVAKITAKL 197          
BLAST of CV886758 vs. ExPASy Swiss-Prot
Match: WRBA_KLEP3 (Flavoprotein wrbA OS=Klebsiella pneumoniae (strain 342) GN=wrbA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.164e-42
Identity = 93/199 (46.73%), Postives = 124/199 (62.31%), Query Frame = -2
Query:  215 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHIAGIAKKLKG 808
            K+ ++YYSMYGH+E +A  +  GA+ V+GVE  + +VPET+  E   K     ++  P+ TP ELAE D  +FG PTRFG M+ Q + FLD TGGLW +  L GK A +F               T  T L HHGMI VPIGY     +F++ +V+GG+PYGA T A GDGSRQP+E EL  A +QG+H+A +A K+ G
Sbjct:    3 KILVLYYSMYGHIETMAHAVADGANRVDGVEVVVKRVPETMQAEAFAKAGGKTQN-APVATPQELAEYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKIASVFSSTGTGGGQEQTITST-WTTLAHHGMIIVPIGYG-AQELFDISQVRGGTPYGATTIAGGDGSRQPSEEELAIARYQGEHVAKLAVKVHG 198          
BLAST of CV886758 vs. ExPASy Swiss-Prot
Match: WRBA_CITK8 (Flavoprotein wrbA OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=wrbA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.164e-42
Identity = 89/199 (44.72%), Postives = 125/199 (62.81%), Query Frame = -2
Query:  215 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHIAGIAKKLKG 808
            K+ ++YYSMYGH+E +A  + +GA+ V+G E  + +VPET+  E+  K     ++  P+ TP EL + D  +FG PTRFG M+ Q + FLD TGGLW +  L GK A +F               T  T L HHGM+ VPIGY     +F++ +V+GG+PYGA T A GDGSRQP++ EL  A +QG+++AG+A KL G
Sbjct:    3 KILVLYYSMYGHIETMAHAVAEGANKVDGAEVVIKRVPETMQPEIFAKAGGKTQN-APVATPQELPDYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITST-WTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG 198          
BLAST of CV886758 vs. ExPASy Swiss-Prot
Match: WRBA_ECO5E (Flavoprotein wrbA OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=wrbA PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.520e-42
Identity = 91/199 (45.73%), Postives = 125/199 (62.81%), Query Frame = -2
Query:  215 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHIAGIAKKLKG 808
            KV ++YYSMYGH+E +A  + +GAS V+G E  + +VPET+  ++  K     ++  P+ TP ELA  D  +FG PTRFG M+ Q + FLD TGGLW +  L GK A +F               T  T L HHGM+ VPIGY     +F++ +V+GG+PYGA T A GDGSRQP++ EL  A +QG+++AG+A KL G
Sbjct:    3 KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMSPQLFEKAGGKTQT-APVATPQELANYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITST-WTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG 198          
BLAST of CV886758 vs. ExPASy Swiss-Prot
Match: WRBA_ECO57 (Putative flavoprotein wrbA OS=Escherichia coli O157:H7 GN=wrbA PE=5 SV=3)

HSP 1 Score: 173.326 bits (438), Expect = 1.520e-42
Identity = 91/199 (45.73%), Postives = 125/199 (62.81%), Query Frame = -2
Query:  215 KVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHIAGIAKKLKG 808
            KV ++YYSMYGH+E +A  + +GAS V+G E  + +VPET+  ++  K     ++  P+ TP ELA  D  +FG PTRFG M+ Q + FLD TGGLW +  L GK A +F               T  T L HHGM+ VPIGY     +F++ +V+GG+PYGA T A GDGSRQP++ EL  A +QG+++AG+A KL G
Sbjct:    3 KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMSPQLFEKAGGKTQT-APVATPQELANYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITST-WTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG 198          
BLAST of CV886758 vs. ExPASy Swiss-Prot
Match: WRBA_RHORT (Flavoprotein wrbA OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=wrbA PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.593e-42
Identity = 94/200 (47.00%), Postives = 122/200 (61.00%), Query Frame = -2
Query:  215 TKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHIAGIAKKLKG 811
            TKV ++YYSMYGH++ LA+EI  G + V+GVE  L +VPE +  E+L  + A    D PI + +ELA+ DG + G PTRFG MA Q + FLD TGGLW   +L GK  G F            T L+  T  +HHGM+ V + Y     MF+  + + G PYGA T A GDGSRQP++ E   A  QG+H AG+AKKLKG
Sbjct:    5 TKVLVLYYSMYGHIDTLAKEIAAGVAEVDGVEVALKRVPEHMSAELLSTIHARTDFDTPIASVDELADYDGILIGTPTRFGNMAGQMRNFLDQTGGLWAKGKLVGKAGGAF-TSTATGGGAETTLLSVYTNFLHHGMVVVGVPYG-TPEMFDTSEARAGGPYGAATLAGGDGSRQPSDKERTIARFQGRHFAGVAKKLKG 202          
BLAST of CV886758 vs. ExPASy Swiss-Prot
Match: WRBA_GEOSL (Flavoprotein wrbA OS=Geobacter sulfurreducens GN=wrbA PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.386e-42
Identity = 98/202 (48.51%), Postives = 124/202 (61.39%), Query Frame = -2
Query:  215 VYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSA--PPKS--DVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYXXXXXXXXXXXTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA-GDGSRQPTELELEQAFHQGKHIAGIAKKLKG 805
            V IVYYSMYGH+ ++AE + +G   V G EA L +VPETL  +VL KM A  P K+   +P+ T +ELA AD  +FG PTRFG M  Q + FLDATGGLW    L GK AG+F            T LT  T L+H GM+ V + Y F AG   ++++ GGSPYGA T A G G R P+E +L  A  QG+++A IA KL G
Sbjct:    3 VLIVYYSMYGHIHRMAEAVAEGVREVPGAEAVLRRVPETLSPDVLEKMGAVEPQKAFAHIPVATVDELASADAIIFGTPTRFGNMCGQMRQFLDATGGLWVKGSLVGKAAGVFTSSATQHGGQESTILTFHTFLLHQGMVIVGLPYAF-AGQTRIDEITGGSPYGASTIAGGQGERLPSENDLAGARFQGRYVAQIAAKLNG 203          
The following BLAST results are available for this feature:
BLAST of CV886758 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
WRBA_SALPB3.063e-4345.23Flavoprotein wrbA OS=Salmonella paratyphi B (strai... [more]
WRBA_SALPA3.063e-4345.23Flavoprotein wrbA OS=Salmonella paratyphi A GN=wrb... [more]
WRBA_PARL13.063e-4345.23Flavoprotein wrbA OS=Parvibaculum lavamentivorans ... [more]
WRBA_YERE81.164e-4246.70Flavoprotein wrbA OS=Yersinia enterocolitica serot... [more]
WRBA_KLEP31.164e-4246.73Flavoprotein wrbA OS=Klebsiella pneumoniae (strain... [more]
WRBA_CITK81.164e-4244.72Flavoprotein wrbA OS=Citrobacter koseri (strain AT... [more]
WRBA_ECO5E1.520e-4245.73Flavoprotein wrbA OS=Escherichia coli O157:H7 (str... [more]
WRBA_ECO571.520e-4245.73Putative flavoprotein wrbA OS=Escherichia coli O15... [more]
WRBA_RHORT2.593e-4247.00Flavoprotein wrbA OS=Rhodospirillum rubrum (strain... [more]
WRBA_GEOSL3.386e-4248.51Flavoprotein wrbA OS=Geobacter sulfurreducens GN=w... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_025A07_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_025_T7_A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV886758 ID=CV886758; Name=CV886758; organism=Citrus sinensis; type=EST; length=857bp
ATTTATGTAAGAAGAAGTACAAATAATCAACCAAGCAACTTTTTATCATG
AAGAAAAGCCACTATATGACACACGCACAAAGCTTATACTGATAACAAAG
CAAGAATTTATTGTTTGCAAACCAGAAGATATAGGAAACCGGGAATTCTA
GAGACGAAAAGAATGGAATAAGTCCACCTAATGGTTGTATTGTAAATTGA
AATATTTAAGCACTTCCCTTCAGCTTCTTTGCAATGCCCGCAATGTGTTT
TCCCTGGTGGAAAGCTTGCTCCAACTCAAGCTCAGTTGGCTGTCTCGAGC
CATCTCCAGCAAAAGTTCCTGCACCGTAGGGACTTCCACCTTTCACTTTC
TCCATCTCAAACATGCCAGCACCAAATGTGTATCCAATAGGAACAAATAT
CATCCCATGGTGAACAAGCTGAGTAATTGCCGTCAACGCTGTAGTCTCTT
GTCCACCACCTTGTGACCCAGTGCTGTAGAACATCCCAGCAGGTTTGCCA
GCGAGCTGTTGTGTCCTCCATAGACCACCAGTAGCATCTAAAAATGCTTT
AAATTGAGCAGCCATCATTCCAAATCTTGTTGGGAAGCCAAAAACAAACC
CATCAGCCTCAGCAAGTTCGTTGGGGGTAATAATAGGTACATCACTCTTT
GGTGGTGCACTCATCTTACCAAGTACCTCCTCAGGTAGTGTCTCAGGGAC
CTGCCATAATTTGGCTTCAACACCCTCAACAGATGAAGCTCCTTTCTTTA
TCTCTTCTGCCAGTTTCTCTACATGTCCATACATGGAATAGTACACAATA
TACACTTTGGTTGCCATCTCTTAAGGAGTCTTCTTCGACGAGTCTCTGTT
ACTTCCT
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