CX674608
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX674608 vs. ExPASy Swiss-Prot
Match: RBM12_PONAB (RNA-binding protein 12 OS=Pongo abelii GN=RBM12 PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.609e-14 Identity = 54/167 (32.34%), Postives = 80/167 (47.90%), Query Frame = 1 Query: 316 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKAT 786 V + G+PF+ + D+ FF GL + V LL + GR +G V F P AL+R+R M +RYVEV + + A + ++ PPP S KR + E + ++GLPF + ++ FFK I+ED I+IA P+GKAT Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATERQWV-AAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKAT 471
BLAST of CX674608 vs. ExPASy Swiss-Prot
Match: RBM12_HUMAN (RNA-binding protein 12 OS=Homo sapiens GN=RBM12 PE=1 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.609e-14 Identity = 54/167 (32.34%), Postives = 80/167 (47.90%), Query Frame = 1 Query: 316 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKAT 786 V + G+PF+ + D+ FF GL + V LL + GR +G V F P AL+R+R M +RYVEV + + A + ++ PPP S KR + E + ++GLPF + ++ FFK I+ED I+IA P+GKAT Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATERQWV-AAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKAT 471
BLAST of CX674608 vs. ExPASy Swiss-Prot
Match: GRSF1_MOUSE (G-rich sequence factor 1 OS=Mus musculus GN=Grsf1 PE=1 SV=2) HSP 1 Score: 79.337 bits (194), Expect = 2.609e-14 Identity = 59/192 (30.73%), Postives = 88/192 (45.83%), Query Frame = 1 Query: 313 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLV--NKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVAS-------------------------EVNYE----GIYDNDFHGSPPPSRAKRYN---DKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKAT 786 VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL + R+ +G RY+E+F +R + V S EVN + +++D P +++ D + + MRGLPF +I+ FF K + +I + GKAT Sbjct: 250 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSHKGKKMTSSPPTKYITEPEVVFEEHEVNEDIRPMTAFESDKEIELPKEMSEKLPEAVDFGTLPSLHFVHMRGLPFQANAQDIINFFAPLKPV--RITMEYSSSGKAT 439
BLAST of CX674608 vs. ExPASy Swiss-Prot
Match: HNRH1_MOUSE (Heterogeneous nuclear ribonucleoprotein H OS=Mus musculus GN=Hnrnph1 PE=1 SV=3) HSP 1 Score: 78.5666 bits (192), Expect = 4.451e-14 Identity = 52/163 (31.90%), Postives = 85/163 (52.15%), Query Frame = 1 Query: 313 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKAT 786 VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL++DR+ MG RYVEVF+ ++ V + + + SP + ND +++RGLPF K EIVQFF +I+ + I + G++T Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFK----------SNNVEMDWVLKHTGPNSPDTA-----ND-------GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRST 152 HSP 2 Score: 75.8702 bits (185), Expect = 2.885e-13 Identity = 63/218 (28.90%), Postives = 93/218 (42.66%), Query Frame = 1 Query: 316 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDY---------------------------YNAVASEVNYE-----------GIYD-----NDFHGSPPPSRAK------------RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKAT 786 VRLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++ ++ +G RY+E+F+ R + YN++ +E G YD ND +G + RY D Q + MRGLP+ +++I FF + ++HI PDG+ T Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVT 328
BLAST of CX674608 vs. ExPASy Swiss-Prot
Match: HNRH1_HUMAN (Heterogeneous nuclear ribonucleoprotein H OS=Homo sapiens GN=HNRNPH1 PE=1 SV=4) HSP 1 Score: 78.5666 bits (192), Expect = 4.451e-14 Identity = 52/163 (31.90%), Postives = 85/163 (52.15%), Query Frame = 1 Query: 313 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKAT 786 VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL++DR+ MG RYVEVF+ ++ V + + + SP + ND +++RGLPF K EIVQFF +I+ + I + G++T Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFK----------SNNVEMDWVLKHTGPNSPDTA-----ND-------GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRST 152 HSP 2 Score: 75.8702 bits (185), Expect = 2.885e-13 Identity = 63/218 (28.90%), Postives = 93/218 (42.66%), Query Frame = 1 Query: 316 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDY---------------------------YNAVASEVNYE-----------GIYD-----NDFHGSPPPSRAK------------RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKAT 786 VRLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++ ++ +G RY+E+F+ R + YN++ +E G YD ND +G + RY D Q + MRGLP+ +++I FF + ++HI PDG+ T Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPV--RVHIEIGPDGRVT 328
BLAST of CX674608 vs. ExPASy Swiss-Prot
Match: GRSF1_HUMAN (G-rich sequence factor 1 OS=Homo sapiens GN=GRSF1 PE=1 SV=3) HSP 1 Score: 78.5666 bits (192), Expect = 4.451e-14 Identity = 59/192 (30.73%), Postives = 86/192 (44.79%), Query Frame = 1 Query: 313 VVRLRGLPFNCTDIDICKFFAGLDIVDVLLV--NKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVAS-------------------------EVNYE----GIYDNDFHGSPP---PSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKAT 786 VVRLRGLP++C + DI FFAGL+IVD+ V + R +GEA+V F P AL + R+ +G RY+E+F +R + V S EVN + ++++ P P + D + MRGLPF +I+ FF K + +I + GKAT Sbjct: 251 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPV--RITMEYSSSGKAT 440
BLAST of CX674608 vs. ExPASy Swiss-Prot
Match: HNRH2_RAT (Heterogeneous nuclear ribonucleoprotein H2 OS=Rattus norvegicus GN=Hnrnph2 PE=1 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 5.813e-14 Identity = 51/163 (31.29%), Postives = 85/163 (52.15%), Query Frame = 1 Query: 313 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKAT 786 VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL++DR+ MG RYVEVF+ ++ V + + + SP + ND +++RGLPF K EIVQFF +I+ + + + G++T Sbjct: 12 VVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFK----------SNSVEMDWVLKHTGPNSPDTA-----ND-------GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRST 152 HSP 2 Score: 75.0998 bits (183), Expect = 4.921e-13 Identity = 63/218 (28.90%), Postives = 93/218 (42.66%), Query Frame = 1 Query: 316 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDY---------------------------YNAVASEVNYE-----------GIYD-----NDFHGSPPPSRAK------------RYND---KDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKAT 786 VRLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++ ++ +G RY+E+F+ R + YN++ +E G YD ND +G + RY D Q + MRGLP+ +++I FF + ++HI PDG+ T Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPRKLMTMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYGGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVT 328
BLAST of CX674608 vs. ExPASy Swiss-Prot
Match: HNRH2_PONAB (Heterogeneous nuclear ribonucleoprotein H2 OS=Pongo abelii GN=HNRNPH2 PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 5.813e-14 Identity = 51/163 (31.29%), Postives = 85/163 (52.15%), Query Frame = 1 Query: 313 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKAT 786 VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL++DR+ MG RYVEVF+ ++ V + + + SP + ND +++RGLPF K EIVQFF +I+ + + + G++T Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLALKKDRETMGHRYVEVFK----------SNSVEMDWVLKHTGPNSPDTA-----ND-------GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRST 152 HSP 2 Score: 75.0998 bits (183), Expect = 4.921e-13 Identity = 63/218 (28.90%), Postives = 93/218 (42.66%), Query Frame = 1 Query: 316 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDY---------------------------YNAVASEVNYE-----------GIYD-----NDFHGSPPPSRAK------------RYND---KDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKAT 786 VRLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++ ++ +G RY+E+F+ R + YN++ +E G YD ND +G + RY D Q + MRGLP+ +++I FF + ++HI PDG+ T Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYGGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVT 328
BLAST of CX674608 vs. ExPASy Swiss-Prot
Match: HNRH2_MOUSE (Heterogeneous nuclear ribonucleoprotein H2 OS=Mus musculus GN=Hnrnph2 PE=1 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 5.813e-14 Identity = 51/163 (31.29%), Postives = 85/163 (52.15%), Query Frame = 1 Query: 313 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKAT 786 VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL++DR+ MG RYVEVF+ ++ V + + + SP + ND +++RGLPF K EIVQFF +I+ + + + G++T Sbjct: 12 VVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFK----------SNSVEMDWVLKHTGPNSPDTA-----ND-------GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRST 152 HSP 2 Score: 75.0998 bits (183), Expect = 4.921e-13 Identity = 63/218 (28.90%), Postives = 93/218 (42.66%), Query Frame = 1 Query: 316 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDY---------------------------YNAVASEVNYE-----------GIYD-----NDFHGSPPPSRAK------------RYND---KDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKAT 786 VRLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++ ++ +G RY+E+F+ R + YN++ +E G YD ND +G + RY D Q + MRGLP+ +++I FF + ++HI PDG+ T Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPRKLMTMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYGGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVT 328
BLAST of CX674608 vs. ExPASy Swiss-Prot
Match: HNRH2_HUMAN (Heterogeneous nuclear ribonucleoprotein H2 OS=Homo sapiens GN=HNRNPH2 PE=1 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 5.813e-14 Identity = 51/163 (31.29%), Postives = 85/163 (52.15%), Query Frame = 1 Query: 313 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKAT 786 VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL++DR+ MG RYVEVF+ ++ V + + + SP + ND +++RGLPF K EIVQFF +I+ + + + G++T Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLALKKDRETMGHRYVEVFK----------SNSVEMDWVLKHTGPNSPDTA-----ND-------GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRST 152 HSP 2 Score: 75.0998 bits (183), Expect = 4.921e-13 Identity = 63/218 (28.90%), Postives = 93/218 (42.66%), Query Frame = 1 Query: 316 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDY---------------------------YNAVASEVNYE-----------GIYD-----NDFHGSPPPSRAK------------RYND---KDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKAT 786 VRLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++ ++ +G RY+E+F+ R + YN++ +E G YD ND +G + RY D Q + MRGLP+ +++I FF + ++HI PDG+ T Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYGGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVT 328 The following BLAST results are available for this feature:
BLAST of CX674608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 33
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX674608 ID=CX674608; Name=CX674608; organism=Citrus sinensis; type=EST; length=786bpback to top |