CX674608
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX674608 vs. ExPASy Swiss-Prot
Match: HNRH2_BOVIN (Heterogeneous nuclear ribonucleoprotein H2 OS=Bos taurus GN=HNRNPH2 PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 5.813e-14 Identity = 51/163 (31.29%), Postives = 85/163 (52.15%), Query Frame = 1 Query: 313 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKAT 786 VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL++DR+ MG RYVEVF+ ++ V + + + SP + ND +++RGLPF K EIVQFF +I+ + + + G++T Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFK----------SNSVEMDWVLKHTGPNSPDTA-----ND-------GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRST 152 HSP 2 Score: 76.2554 bits (186), Expect = 2.209e-13 Identity = 63/218 (28.90%), Postives = 94/218 (43.12%), Query Frame = 1 Query: 316 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDY---------------------------YNAVASEVNYE-----------GIYD-----NDFH--GSPPPSRAKRYNDKDQMEHT-------------EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKAT 786 VRLRGLPF C+ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++ ++ +G RY+E+F+ R + YN++ +E G YD ND + GS R + Y +H + MRGLP+ +++I FF + ++HI PDG+ T Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYGGYNDGYGFGSDRFGRDQNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVT 328
BLAST of CX674608 vs. ExPASy Swiss-Prot
Match: ESRP1_DANRE (Epithelial splicing regulatory protein 1 OS=Danio rerio GN=esrp1 PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 5.813e-14 Identity = 52/164 (31.71%), Postives = 78/164 (47.56%), Query Frame = 1 Query: 313 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIED---KIHIACRPDGKAT 786 V+R RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR + +MG RY+EV++ +D+ N + + E+ I++MRGLPF+ +++QFF + D I PDG+ T Sbjct: 226 VIRARGLPWQSSDQDIARFFRGLNIAKGGAALCLNAQGRRNGEALVRFESEEHRDLALQRHKHHMGGRYIEVYKATGEDFLKIAGGTSNEVASFLS-------------------RENQIIVRMRGLPFNATAEQVLQFFSPACPVTDGSEGILFVRFPDGRPT 370
BLAST of CX674608 vs. ExPASy Swiss-Prot
Match: ESRP1_XENTR (Epithelial splicing regulatory protein 1 OS=Xenopus tropicalis GN=esrp1 PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 9.915e-14 Identity = 46/140 (32.86%), Postives = 70/140 (50.00%), Query Frame = 1 Query: 313 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFF 723 ++R RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR + +MG RY+EV++ +D+ N ++ K E+ I++MRGLPF+ E++ FF Sbjct: 227 IIRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGNRYIEVYKATGEDFLKIAGGTSN----------------EVAQFLSK---ENQVIVRMRGLPFTATAEEVLAFF 347
BLAST of CX674608 vs. ExPASy Swiss-Prot
Match: ESRP1_XENLA (Epithelial splicing regulatory protein 1 OS=Xenopus laevis GN=esrp1 PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 9.915e-14 Identity = 46/140 (32.86%), Postives = 70/140 (50.00%), Query Frame = 1 Query: 313 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFF 723 ++R RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR + +MG RY+EV++ +D+ N ++ K E+ I++MRGLPF+ E++ FF Sbjct: 227 IIRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGNRYIEVYKATGEDFLKIAGGTSN----------------EVAQFLSK---ENQVIVRMRGLPFTATAEEVLAFF 347
BLAST of CX674608 vs. ExPASy Swiss-Prot
Match: HNRH1_RAT (Heterogeneous nuclear ribonucleoprotein H OS=Rattus norvegicus GN=Hnrnph1 PE=1 SV=2) HSP 1 Score: 77.0258 bits (188), Expect = 1.295e-13 Identity = 51/163 (31.29%), Postives = 85/163 (52.15%), Query Frame = 1 Query: 313 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKAT 786 VV++RGLP++C+ ++ +FF+ I + + + GR SGEAFV +V+ AL++DR+ MG RYVEVF+ ++ V + + + SP + ND +++RGLPF + EIVQFF +I+ + I + G++T Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFK----------SNNVEMDWVLKHTGPNSPDTA-----ND-------GFVRLRGLPFGCSEEEIVQFFSGLEIVPNGITLPVDFQGRST 152 HSP 2 Score: 77.0258 bits (188), Expect = 1.295e-13 Identity = 63/218 (28.90%), Postives = 94/218 (43.12%), Query Frame = 1 Query: 316 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDY---------------------------YNAVASEVNYE-----------GIYD-----NDFHGSPPPSRAK------------RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKAT 786 VRLRGLPF C++ +I +FF+GL+IV L V+ GR +GEAFV FA E AL++ ++ +G RY+E+F+ R + YN++ +E G YD ND +G + RY D Q + MRGLP+ +++I FF + ++HI PDG+ T Sbjct: 113 VRLRGLPFGCSEEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPV--RVHIETGPDGRVT 328
BLAST of CX674608 vs. ExPASy Swiss-Prot
Match: ESRP2_RAT (Epithelial splicing regulatory protein 2 OS=Rattus norvegicus GN=Esrp2 PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 6.427e-13 Identity = 51/164 (31.10%), Postives = 81/164 (49.39%), Query Frame = 1 Query: 313 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIE---DKIHIACRPDGKAT 786 VVR RGLP+ +D D+ +FF GL+I L +N GR +GEA + F Q + ALQR + +MG RY+EV++ +++ G A+ + +DQ+ IL++RGLPFS ++++ F + D + PDG+ T Sbjct: 247 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFEDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVKIA---------------GGTSLEVARFLSREDQV----ILRLRGLPFSAGPADVLDFLGPECPVTGGVDGLLFVRHPDGRPT 391
BLAST of CX674608 vs. ExPASy Swiss-Prot
Match: ESRP2_MOUSE (Epithelial splicing regulatory protein 2 OS=Mus musculus GN=Esrp2 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 8.393e-13 Identity = 51/164 (31.10%), Postives = 81/164 (49.39%), Query Frame = 1 Query: 313 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKAT 786 VVR RGLP+ +D D+ +FF GL+I L +N GR +GEA + F Q + ALQR + +MG RY+EV++ +++ G A+ + +DQ+ IL++RGLPFS ++++ F + D + PDG+ T Sbjct: 248 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVKIA---------------GGTSLEVARFLSREDQV----ILRLRGLPFSAGPTDVLGFLGPECPVTGGADGLLFVRHPDGRPT 392
BLAST of CX674608 vs. ExPASy Swiss-Prot
Match: ESRP2_CHICK (Epithelial splicing regulatory protein 2 OS=Gallus gallus GN=ESRP2 PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.096e-12 Identity = 44/139 (31.65%), Postives = 71/139 (51.08%), Query Frame = 1 Query: 313 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQF 720 V+R RGLP+ +D DI +FF GL+I L +N GR +GEA V F Q + AL+R + +MG RY+EV++ +++ N ++ K E+ I++MRGLPF+ + +++ F Sbjct: 227 VIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFVNSEQRDLALERHKHHMGSRYIEVYKATGEEFLKIAGGTSN----------------EVAQFLSK---ENQVIIRMRGLPFTATQEDVLGF 346
BLAST of CX674608 vs. ExPASy Swiss-Prot
Match: ESRP2_HUMAN (Epithelial splicing regulatory protein 2 OS=Homo sapiens GN=ESRP2 PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.870e-12 Identity = 45/139 (32.37%), Postives = 73/139 (52.52%), Query Frame = 1 Query: 313 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQF 720 VVR RGLP+ +D D+ +FF GL++ L +N GR +GEA + F Q + ALQR + +MG RY+EV++ +++ G A+ + +DQ+ IL++RGLPFS ++++ F Sbjct: 258 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVKIA---------------GGTSLEVARFLSREDQV----ILRLRGLPFSAGPTDVLGF 377
BLAST of CX674608 vs. ExPASy Swiss-Prot
Match: SYM2_CAEEL (RNA-binding protein sym-2 OS=Caenorhabditis elegans GN=sym-2 PE=2 SV=3) HSP 1 Score: 70.8626 bits (172), Expect = 9.280e-12 Identity = 45/142 (31.69%), Postives = 74/142 (52.11%), Query Frame = 1 Query: 313 VVRLRGLPFNCTDIDICKFFAGLDIVDVLL--VNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDY 732 +VR+RGLP++CTD I FF L + D +L +GR +G+AFV F + L + RQ +G+RY+E+F+ + A+EV N + SP + A + + + + +++RGLP+ IV F D+ Sbjct: 282 IVRMRGLPYDCTDAQIRTFFEPLKLTDKILFITRTDGRPTGDAFVQFETEEDAQQGLLKHRQVIGQRYIELFK--------STAAEVQQVVKRCNLINSSPAVANAV---EAPEEKKKDCVRLRGLPYEATVQHIVTFLGDF 412 The following BLAST results are available for this feature:
BLAST of CX674608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 33
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Sequences
The
following sequences are available for this feature:
EST sequence >CX674608 ID=CX674608; Name=CX674608; organism=Citrus sinensis; type=EST; length=786bpback to top |