CX674608

Overview
NameCX674608
Unique NameCX674608
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674608 vs. ExPASy Swiss-Prot
Match: HNRH2_BOVIN (Heterogeneous nuclear ribonucleoprotein H2 OS=Bos taurus GN=HNRNPH2 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.813e-14
Identity = 51/163 (31.29%), Postives = 85/163 (52.15%), Query Frame = 1
Query:  313 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKAT 786
            VV++RGLP++C+  ++ +FF+   I +       +  + GR SGEAFV      +V+ AL++DR+ MG RYVEVF+          ++ V  + +  +    SP  +     ND         +++RGLPF   K EIVQFF   +I+ + + +     G++T
Sbjct:   12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFK----------SNSVEMDWVLKHTGPNSPDTA-----ND-------GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRST 152          

HSP 2 Score: 76.2554 bits (186), Expect = 2.209e-13
Identity = 63/218 (28.90%), Postives = 94/218 (43.12%), Query Frame = 1
Query:  316 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDY---------------------------YNAVASEVNYE-----------GIYD-----NDFH--GSPPPSRAKRYNDKDQMEHT-------------EILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKAT 786
            VRLRGLPF C+  +I +FF+GL+IV     L V+  GR +GEAFV FA     E AL++ ++ +G RY+E+F+  R +                            YN++     +E           G YD     ND +  GS    R + Y      +H                + MRGLP+   +++I  FF     +  ++HI   PDG+ T
Sbjct:  113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYGGYNDGYGFGSDRFGRDQNYCFSGMSDHRYGDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVT 328          
BLAST of CX674608 vs. ExPASy Swiss-Prot
Match: ESRP1_DANRE (Epithelial splicing regulatory protein 1 OS=Danio rerio GN=esrp1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.813e-14
Identity = 52/164 (31.71%), Postives = 78/164 (47.56%), Query Frame = 1
Query:  313 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIED---KIHIACRPDGKAT 786
            V+R RGLP+  +D DI +FF GL+I      L +N  GR +GEA V F      + ALQR + +MG RY+EV++   +D+        N    + +                    E+  I++MRGLPF+    +++QFF     + D    I     PDG+ T
Sbjct:  226 VIRARGLPWQSSDQDIARFFRGLNIAKGGAALCLNAQGRRNGEALVRFESEEHRDLALQRHKHHMGGRYIEVYKATGEDFLKIAGGTSNEVASFLS-------------------RENQIIVRMRGLPFNATAEQVLQFFSPACPVTDGSEGILFVRFPDGRPT 370          
BLAST of CX674608 vs. ExPASy Swiss-Prot
Match: ESRP1_XENTR (Epithelial splicing regulatory protein 1 OS=Xenopus tropicalis GN=esrp1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.915e-14
Identity = 46/140 (32.86%), Postives = 70/140 (50.00%), Query Frame = 1
Query:  313 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFF 723
            ++R RGLP+  +D DI +FF GL+I      L +N  GR +GEA V F      + ALQR + +MG RY+EV++   +D+        N                   ++  K   E+  I++MRGLPF+    E++ FF
Sbjct:  227 IIRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGNRYIEVYKATGEDFLKIAGGTSN----------------EVAQFLSK---ENQVIVRMRGLPFTATAEEVLAFF 347          
BLAST of CX674608 vs. ExPASy Swiss-Prot
Match: ESRP1_XENLA (Epithelial splicing regulatory protein 1 OS=Xenopus laevis GN=esrp1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.915e-14
Identity = 46/140 (32.86%), Postives = 70/140 (50.00%), Query Frame = 1
Query:  313 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFF 723
            ++R RGLP+  +D DI +FF GL+I      L +N  GR +GEA V F      + ALQR + +MG RY+EV++   +D+        N                   ++  K   E+  I++MRGLPF+    E++ FF
Sbjct:  227 IIRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGNRYIEVYKATGEDFLKIAGGTSN----------------EVAQFLSK---ENQVIVRMRGLPFTATAEEVLAFF 347          
BLAST of CX674608 vs. ExPASy Swiss-Prot
Match: HNRH1_RAT (Heterogeneous nuclear ribonucleoprotein H OS=Rattus norvegicus GN=Hnrnph1 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.295e-13
Identity = 51/163 (31.29%), Postives = 85/163 (52.15%), Query Frame = 1
Query:  313 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKAT 786
            VV++RGLP++C+  ++ +FF+   I +       +  + GR SGEAFV      +V+ AL++DR+ MG RYVEVF+          ++ V  + +  +    SP  +     ND         +++RGLPF   + EIVQFF   +I+ + I +     G++T
Sbjct:   12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFK----------SNNVEMDWVLKHTGPNSPDTA-----ND-------GFVRLRGLPFGCSEEEIVQFFSGLEIVPNGITLPVDFQGRST 152          

HSP 2 Score: 77.0258 bits (188), Expect = 1.295e-13
Identity = 63/218 (28.90%), Postives = 94/218 (43.12%), Query Frame = 1
Query:  316 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDY---------------------------YNAVASEVNYE-----------GIYD-----NDFHGSPPPSRAK------------RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKAT 786
            VRLRGLPF C++ +I +FF+GL+IV     L V+  GR +GEAFV FA     E AL++ ++ +G RY+E+F+  R +                            YN++     +E           G YD     ND +G       +            RY D     Q      + MRGLP+   +++I  FF     +  ++HI   PDG+ T
Sbjct:  113 VRLRGLPFGCSEEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPV--RVHIETGPDGRVT 328          
BLAST of CX674608 vs. ExPASy Swiss-Prot
Match: ESRP2_RAT (Epithelial splicing regulatory protein 2 OS=Rattus norvegicus GN=Esrp2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.427e-13
Identity = 51/164 (31.10%), Postives = 81/164 (49.39%), Query Frame = 1
Query:  313 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIE---DKIHIACRPDGKAT 786
            VVR RGLP+  +D D+ +FF GL+I      L +N  GR +GEA + F    Q + ALQR + +MG RY+EV++   +++                   G      A+  + +DQ+    IL++RGLPFS   ++++ F      +    D +     PDG+ T
Sbjct:  247 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFEDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVKIA---------------GGTSLEVARFLSREDQV----ILRLRGLPFSAGPADVLDFLGPECPVTGGVDGLLFVRHPDGRPT 391          
BLAST of CX674608 vs. ExPASy Swiss-Prot
Match: ESRP2_MOUSE (Epithelial splicing regulatory protein 2 OS=Mus musculus GN=Esrp2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.393e-13
Identity = 51/164 (31.10%), Postives = 81/164 (49.39%), Query Frame = 1
Query:  313 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKAT 786
            VVR RGLP+  +D D+ +FF GL+I      L +N  GR +GEA + F    Q + ALQR + +MG RY+EV++   +++                   G      A+  + +DQ+    IL++RGLPFS   ++++ F      +    D +     PDG+ T
Sbjct:  248 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVKIA---------------GGTSLEVARFLSREDQV----ILRLRGLPFSAGPTDVLGFLGPECPVTGGADGLLFVRHPDGRPT 392          
BLAST of CX674608 vs. ExPASy Swiss-Prot
Match: ESRP2_CHICK (Epithelial splicing regulatory protein 2 OS=Gallus gallus GN=ESRP2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.096e-12
Identity = 44/139 (31.65%), Postives = 71/139 (51.08%), Query Frame = 1
Query:  313 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQF 720
            V+R RGLP+  +D DI +FF GL+I      L +N  GR +GEA V F    Q + AL+R + +MG RY+EV++   +++        N                   ++  K   E+  I++MRGLPF+  + +++ F
Sbjct:  227 VIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFVNSEQRDLALERHKHHMGSRYIEVYKATGEEFLKIAGGTSN----------------EVAQFLSK---ENQVIIRMRGLPFTATQEDVLGF 346          
BLAST of CX674608 vs. ExPASy Swiss-Prot
Match: ESRP2_HUMAN (Epithelial splicing regulatory protein 2 OS=Homo sapiens GN=ESRP2 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.870e-12
Identity = 45/139 (32.37%), Postives = 73/139 (52.52%), Query Frame = 1
Query:  313 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQF 720
            VVR RGLP+  +D D+ +FF GL++      L +N  GR +GEA + F    Q + ALQR + +MG RY+EV++   +++                   G      A+  + +DQ+    IL++RGLPFS   ++++ F
Sbjct:  258 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVKIA---------------GGTSLEVARFLSREDQV----ILRLRGLPFSAGPTDVLGF 377          
BLAST of CX674608 vs. ExPASy Swiss-Prot
Match: SYM2_CAEEL (RNA-binding protein sym-2 OS=Caenorhabditis elegans GN=sym-2 PE=2 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 9.280e-12
Identity = 45/142 (31.69%), Postives = 74/142 (52.11%), Query Frame = 1
Query:  313 VVRLRGLPFNCTDIDICKFFAGLDIVDVLL--VNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDY 732
            +VR+RGLP++CTD  I  FF  L + D +L     +GR +G+AFV F      +  L + RQ +G+RY+E+F+        + A+EV       N  + SP  + A    +  + +  + +++RGLP+      IV F  D+
Sbjct:  282 IVRMRGLPYDCTDAQIRTFFEPLKLTDKILFITRTDGRPTGDAFVQFETEEDAQQGLLKHRQVIGQRYIELFK--------STAAEVQQVVKRCNLINSSPAVANAV---EAPEEKKKDCVRLRGLPYEATVQHIVTFLGDF 412          
The following BLAST results are available for this feature:
BLAST of CX674608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
HNRH2_BOVIN5.813e-1431.29Heterogeneous nuclear ribonucleoprotein H2 OS=Bos ... [more]
ESRP1_DANRE5.813e-1431.71Epithelial splicing regulatory protein 1 OS=Danio ... [more]
ESRP1_XENTR9.915e-1432.86Epithelial splicing regulatory protein 1 OS=Xenopu... [more]
ESRP1_XENLA9.915e-1432.86Epithelial splicing regulatory protein 1 OS=Xenopu... [more]
HNRH1_RAT1.295e-1331.29Heterogeneous nuclear ribonucleoprotein H OS=Rattu... [more]
ESRP2_RAT6.427e-1331.10Epithelial splicing regulatory protein 2 OS=Rattus... [more]
ESRP2_MOUSE8.393e-1331.10Epithelial splicing regulatory protein 2 OS=Mus mu... [more]
ESRP2_CHICK1.096e-1231.65Epithelial splicing regulatory protein 2 OS=Gallus... [more]
ESRP2_HUMAN1.870e-1232.37Epithelial splicing regulatory protein 2 OS=Homo s... [more]
SYM2_CAEEL9.280e-1231.69RNA-binding protein sym-2 OS=Caenorhabditis elegan... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_7E10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-7E10-J19-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674608 ID=CX674608; Name=CX674608; organism=Citrus sinensis; type=EST; length=786bp
TTTGAGTTTAGGGTTCTTTTTGTTTTTTGGTCTCTGTACGATCGAGTTTC
CTATTAGGGTTTGTTCTAATTTCATCATCATCAGCAAGATAATCGAAGAA
GCTGAGAAAGAATTGAATTTTCAACAGTAAAAGCTATGTACGGATCCAGA
GGGGCAATATTGGGAAGCGGGGGGGTTTCGGACGGGTACGAGGTCGGCTC
AAAGAGACAAAGAATGATGGAACCAAATCCTTACTTCGCAGTGAGCAGCA
GTGCAAGTGGCTTTCAACCTTACGGCTATGGTGGTGGGTTTCCACCCCCG
CCTTCCTTTCCTGTTGTTCGCCTCAGGGGGCTGCCATTTAACTGCACTGA
TATTGACATTTGCAAGTTCTTTGCTGGACTGGATATTGTGGATGTGTTGC
TGGTCAACAAGAATGGACGCTTCTCAGGAGAGGCTTTTGTTGTCTTTGCT
GGGCCCATACAAGTTGAGTTTGCTTTACAGAGAGATCGGCAGAACATGGG
GCGTCGGTATGTTGAAGTTTTCAGGTGCAAGAGACAGGATTACTACAATG
CCGTGGCTTCAGAGGTGAATTATGAAGGGATCTATGATAATGATTTCCAT
GGAAGTCCTCCACCATCACGAGCTAAGAGGTACAATGATAAAGATCAAAT
GGAACACACTGAAATTTTGAAGATGCGTGGTCTTCCTTTCTCTGTGAAGA
AATCTGAAATAGTTCAATTCTTTAAAGACTACAAGATAATTGAGGATAAG
ATACACATTGCATGCCGACCTGATGGTAAGGCTACC
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