CX674608

Overview
NameCX674608
Unique NameCX674608
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674608 vs. ExPASy Swiss-Prot
Match: ESRP2_DANRE (Epithelial splicing regulatory protein 2 OS=Danio rerio GN=esrp2 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 9.280e-12
Identity = 44/139 (31.65%), Postives = 70/139 (50.36%), Query Frame = 1
Query:  313 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQF 720
            V+R RGLP+  +D DI +FF GL+I      L +N  GR +GEA V F      + AL R + +MG RY+EV++   +++        N                 A+  + ++QM    I++MRGLPF+    +++ F
Sbjct:  225 VIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFINSEHRDMALDRHKHHMGSRYIEVYKATGEEFLKIAGGTSN---------------EVAQFLSKENQM----IIRMRGLPFTATPQDVLGF 344          
BLAST of CX674608 vs. ExPASy Swiss-Prot
Match: FUSIL_DROME (RNA-binding protein fusilli OS=Drosophila melanogaster GN=fus PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.067e-11
Identity = 49/168 (29.17%), Postives = 84/168 (50.00%), Query Frame = 1
Query:  313 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFF-----KDYKIIE--DKIHIACRPDGKAT 786
            +VR RGLP+  +D DI KFF GL++      L ++  GR +GEA + F      + AL+R + ++G RY+EV+R   +D+  A+A   + E               A+ +  K       I++MRGLP+     +++ FF         +++  + +    +PDG+AT
Sbjct:  280 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEHRDMALKRHKHHIGTRYIEVYRASGEDFL-AIAGGASNE---------------AQAFLSKGAQ---VIIRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRAT 428          
BLAST of CX674608 vs. ExPASy Swiss-Prot
Match: HNRH3_HUMAN (Heterogeneous nuclear ribonucleoprotein H3 OS=Homo sapiens GN=HNRNPH3 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.700e-11
Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = 1
Query:  316 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQD 540
            VRLRGLPF C+  +I +FF GL+IV     L ++  GR +GEAFV FA     E AL + ++ +G RY+E+FR  R +
Sbjct:   18 VRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKHKERIGHRYIEIFRSSRSE 95          
The following BLAST results are available for this feature:
BLAST of CX674608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
ESRP2_DANRE9.280e-1231.65Epithelial splicing regulatory protein 2 OS=Danio ... [more]
FUSIL_DROME2.067e-1129.17RNA-binding protein fusilli OS=Drosophila melanoga... [more]
HNRH3_HUMAN2.700e-1146.15Heterogeneous nuclear ribonucleoprotein H3 OS=Homo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_7E10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-7E10-J19-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674608 ID=CX674608; Name=CX674608; organism=Citrus sinensis; type=EST; length=786bp
TTTGAGTTTAGGGTTCTTTTTGTTTTTTGGTCTCTGTACGATCGAGTTTC
CTATTAGGGTTTGTTCTAATTTCATCATCATCAGCAAGATAATCGAAGAA
GCTGAGAAAGAATTGAATTTTCAACAGTAAAAGCTATGTACGGATCCAGA
GGGGCAATATTGGGAAGCGGGGGGGTTTCGGACGGGTACGAGGTCGGCTC
AAAGAGACAAAGAATGATGGAACCAAATCCTTACTTCGCAGTGAGCAGCA
GTGCAAGTGGCTTTCAACCTTACGGCTATGGTGGTGGGTTTCCACCCCCG
CCTTCCTTTCCTGTTGTTCGCCTCAGGGGGCTGCCATTTAACTGCACTGA
TATTGACATTTGCAAGTTCTTTGCTGGACTGGATATTGTGGATGTGTTGC
TGGTCAACAAGAATGGACGCTTCTCAGGAGAGGCTTTTGTTGTCTTTGCT
GGGCCCATACAAGTTGAGTTTGCTTTACAGAGAGATCGGCAGAACATGGG
GCGTCGGTATGTTGAAGTTTTCAGGTGCAAGAGACAGGATTACTACAATG
CCGTGGCTTCAGAGGTGAATTATGAAGGGATCTATGATAATGATTTCCAT
GGAAGTCCTCCACCATCACGAGCTAAGAGGTACAATGATAAAGATCAAAT
GGAACACACTGAAATTTTGAAGATGCGTGGTCTTCCTTTCTCTGTGAAGA
AATCTGAAATAGTTCAATTCTTTAAAGACTACAAGATAATTGAGGATAAG
ATACACATTGCATGCCGACCTGATGGTAAGGCTACC
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