EL492458

Overview
NameEL492458
Unique NameEL492458
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length181
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EL492458 vs. ExPASy Swiss-Prot
Match: UBIQ_STRPU (Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.660e-20
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:   13 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            IQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EL492458 vs. ExPASy Swiss-Prot
Match: UBIQ_SPOFR (Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.660e-20
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:   13 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            IQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EL492458 vs. ExPASy Swiss-Prot
Match: UBIQ_SCHPO (Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.660e-20
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:   13 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            IQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EL492458 vs. ExPASy Swiss-Prot
Match: UBIQ_RAT (Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.660e-20
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:   13 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            IQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EL492458 vs. ExPASy Swiss-Prot
Match: UBIQ_RABIT (Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.660e-20
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:   13 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            IQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EL492458 vs. ExPASy Swiss-Prot
Match: UBIQ_PONPY (Ubiquitin OS=Pongo pygmaeus GN=UBA52 PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 6.660e-20
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:   13 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            IQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EL492458 vs. ExPASy Swiss-Prot
Match: UBIQ_PLUXY (Ubiquitin OS=Plutella xylostella PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.660e-20
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:   13 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            IQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EL492458 vs. ExPASy Swiss-Prot
Match: UBIQ_PIG (Ubiquitin OS=Sus scrofa GN=UBA52 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.660e-20
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:   13 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            IQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EL492458 vs. ExPASy Swiss-Prot
Match: UBIQ_PHYIN (Ubiquitin OS=Phytophthora infestans PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.660e-20
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:   13 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            IQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EL492458 vs. ExPASy Swiss-Prot
Match: UBIQ_PANTR (Ubiquitin OS=Pan troglodytes GN=UBB PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 6.660e-20
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:   13 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            IQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of EL492458 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
UBIQ_STRPU6.660e-2097.87Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV... [more]
UBIQ_SPOFR6.660e-2097.87Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1[more]
UBIQ_SCHPO6.660e-2097.87Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=... [more]
UBIQ_RAT6.660e-2097.87Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1[more]
UBIQ_RABIT6.660e-2097.87Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1[more]
UBIQ_PONPY6.660e-2097.87Ubiquitin OS=Pongo pygmaeus GN=UBA52 PE=3 SV=2[more]
UBIQ_PLUXY6.660e-2097.87Ubiquitin OS=Plutella xylostella PE=3 SV=1[more]
UBIQ_PIG6.660e-2097.87Ubiquitin OS=Sus scrofa GN=UBA52 PE=3 SV=1[more]
UBIQ_PHYIN6.660e-2097.87Ubiquitin OS=Phytophthora infestans PE=1 SV=1[more]
UBIQ_PANTR6.660e-2097.87Ubiquitin OS=Pan troglodytes GN=UBB PE=1 SV=2[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC0682 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC0682, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492458 ID=EL492458; Name=EL492458; organism=Citrus sinensis; type=EST; length=181bp
GACTGCGTAGTGATCCAGGACAAGGAAGGGATTCCGCCGGACCAGCAGCG
TTTGATCTTCGCTGGCAAGCAGCTGGAGGATGGAAGGACGCTCGCGGATT
ACAACATTCAGAAGGAATCAACTCTTCATCTGGTTTTGCGTCTGAGGGGT
GGCATGCAGATTTTTGTTACTCAGGACTCAT
back to top