EL492458

Overview
NameEL492458
Unique NameEL492458
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length181
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EL492458 vs. ExPASy Swiss-Prot
Match: UBIQ_OPHHA (Ubiquitin OS=Ophiophagus hannah PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.660e-20
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:   13 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            IQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EL492458 vs. ExPASy Swiss-Prot
Match: UBIQ_NEUCR (Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.660e-20
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:   13 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            IQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EL492458 vs. ExPASy Swiss-Prot
Match: UBIQ_MOUSE (Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.660e-20
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:   13 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            IQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EL492458 vs. ExPASy Swiss-Prot
Match: UBIQ_MANSE (Ubiquitin OS=Manduca sexta PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.660e-20
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:   13 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            IQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EL492458 vs. ExPASy Swiss-Prot
Match: UBIQ_MACFA (Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.660e-20
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:   13 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            IQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EL492458 vs. ExPASy Swiss-Prot
Match: UBIQ_KLULA (Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 6.660e-20
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:   13 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            IQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EL492458 vs. ExPASy Swiss-Prot
Match: UBIQ_ICTPU (Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.660e-20
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:   13 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            IQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EL492458 vs. ExPASy Swiss-Prot
Match: UBIQ_HUMAN (Ubiquitin OS=Homo sapiens GN=RPS27A PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.660e-20
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:   13 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            IQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EL492458 vs. ExPASy Swiss-Prot
Match: UBIQ_HORSE (Ubiquitin OS=Equus caballus GN=UBB PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 6.660e-20
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:   13 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            IQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EL492458 vs. ExPASy Swiss-Prot
Match: UBIQ_GORGO (Ubiquitin OS=Gorilla gorilla gorilla GN=UBB PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 6.660e-20
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:   13 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            IQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of EL492458 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
UBIQ_OPHHA6.660e-2097.87Ubiquitin OS=Ophiophagus hannah PE=3 SV=1[more]
UBIQ_NEUCR6.660e-2097.87Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1[more]
UBIQ_MOUSE6.660e-2097.87Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1[more]
UBIQ_MANSE6.660e-2097.87Ubiquitin OS=Manduca sexta PE=3 SV=1[more]
UBIQ_MACFA6.660e-2097.87Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=... [more]
UBIQ_KLULA6.660e-2097.87Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=... [more]
UBIQ_ICTPU6.660e-2097.87Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV... [more]
UBIQ_HUMAN6.660e-2097.87Ubiquitin OS=Homo sapiens GN=RPS27A PE=1 SV=1[more]
UBIQ_HORSE6.660e-2097.87Ubiquitin OS=Equus caballus GN=UBB PE=3 SV=2[more]
UBIQ_GORGO6.660e-2097.87Ubiquitin OS=Gorilla gorilla gorilla GN=UBB PE=3 S... [more]

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Properties
Property NameValue
Genbank descriptionC0682 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC0682, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492458 ID=EL492458; Name=EL492458; organism=Citrus sinensis; type=EST; length=181bp
GACTGCGTAGTGATCCAGGACAAGGAAGGGATTCCGCCGGACCAGCAGCG
TTTGATCTTCGCTGGCAAGCAGCTGGAGGATGGAAGGACGCTCGCGGATT
ACAACATTCAGAAGGAATCAACTCTTCATCTGGTTTTGCGTCTGAGGGGT
GGCATGCAGATTTTTGTTACTCAGGACTCAT
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