EL492458

Overview
NameEL492458
Unique NameEL492458
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length181
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EL492458 vs. ExPASy Swiss-Prot
Match: UBIQ_LEIMA (Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.938e-19
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 1
Query:   13 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            IQDKEGIPPDQQRLIFAGKQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   30 IQDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of EL492458 vs. ExPASy Swiss-Prot
Match: UBIQ_LEITA (Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.256e-18
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = 1
Query:   13 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            IQDKEGIPPDQQRLIFA KQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   30 IQDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of EL492458 vs. ExPASy Swiss-Prot
Match: UBIQ_LUMTE (Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 1.640e-18
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 1
Query:   13 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 147
            IQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct:   19 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 63          
BLAST of EL492458 vs. ExPASy Swiss-Prot
Match: UBIL_NPVAC (Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 6.892e-17
Identity = 40/47 (85.11%), Postives = 44/47 (93.62%), Query Frame = 1
Query:   13 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            I DKEG+P DQQRLIFAGKQLED +T+ADYNIQKESTLH+VLRLRGG
Sbjct:   30 IADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 76          
BLAST of EL492458 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.176e-16
Identity = 40/47 (85.11%), Postives = 44/47 (93.62%), Query Frame = 1
Query:   13 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            I DKEG+P DQQRLI+AGKQLED +TLADYNIQKESTLH+VLRLRGG
Sbjct:   30 IADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76          
BLAST of EL492458 vs. ExPASy Swiss-Prot
Match: NEDD8_DROME (NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.914e-12
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query:   13 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI 162
            +++KEGIPP QQRLIF+GKQ+ D +T ADY +Q  S LHLVL LRGG  I
Sbjct:   30 VEEKEGIPPQQQRLIFSGKQMNDDKTAADYKVQGGSVLHLVLALRGGDSI 79          
BLAST of EL492458 vs. ExPASy Swiss-Prot
Match: RUB2_ORYSJ (NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.139e-11
Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = 1
Query:   13 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            +++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:   30 VEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of EL492458 vs. ExPASy Swiss-Prot
Match: RUB1_ORYSJ (NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.139e-11
Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = 1
Query:   13 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            +++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:   30 VEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of EL492458 vs. ExPASy Swiss-Prot
Match: RUB1_DESAN (NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.139e-11
Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = 1
Query:   13 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            +++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:   30 VEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of EL492458 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.139e-11
Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = 1
Query:   13 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 153
            +++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:   30 VEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
The following BLAST results are available for this feature:
BLAST of EL492458 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
UBIQ_LEIMA1.938e-1995.74Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1[more]
UBIQ_LEITA1.256e-1893.62Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3... [more]
UBIQ_LUMTE1.640e-1897.78Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 ... [more]
UBIL_NPVAC6.892e-1785.11Ubiquitin-like protein OS=Autographa californica n... [more]
UBIL_NPVOP1.176e-1685.11Ubiquitin-like protein OS=Orgyia pseudotsugata mul... [more]
NEDD8_DROME3.914e-1264.00NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=... [more]
RUB2_ORYSJ1.139e-1168.09NEDD8-like protein RUB2 OS=Oryza sativa subsp. jap... [more]
RUB1_ORYSJ1.139e-1168.09NEDD8-like protein RUB1 OS=Oryza sativa subsp. jap... [more]
RUB1_DESAN1.139e-1168.09NEDD8-like protein RUB1 OS=Deschampsia antarctica ... [more]
RUB1_ARATH1.139e-1168.09NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN... [more]

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Properties
Property NameValue
Genbank descriptionC0682 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC0682, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492458 ID=EL492458; Name=EL492458; organism=Citrus sinensis; type=EST; length=181bp
GACTGCGTAGTGATCCAGGACAAGGAAGGGATTCCGCCGGACCAGCAGCG
TTTGATCTTCGCTGGCAAGCAGCTGGAGGATGGAAGGACGCTCGCGGATT
ACAACATTCAGAAGGAATCAACTCTTCATCTGGTTTTGCGTCTGAGGGGT
GGCATGCAGATTTTTGTTACTCAGGACTCAT
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